Literature DB >> 34824386

Pharmacogenomic analysis of a genetically distinct Indigenous population.

Arvind Jaya Shankar1,2, Sudhir Jadhao1,2, Wendy Hoy3, Simon J Foote4, Hardip R Patel5, Vinod Scaria6, Brendan J McMorran4, Shivashankar H Nagaraj7,8,9.   

Abstract

Indigenous Australians face a disproportionately severe burden of chronic disease relative to other Australians, with elevated rates of morbidity and mortality. While genomics technologies are slowly gaining momentum in personalised treatments for many, a lack of pharmacogenomic research in Indigenous peoples could delay adoption. Appropriately implementing pharmacogenomics in clinical care necessitates an understanding of the frequencies of pharmacologically relevant genetic variants within Indigenous populations. We analysed whole-genome sequence data from 187 individuals from the Tiwi Islands and characterised the pharmacogenomic landscape of this population. Specifically, we compared variant profiles and allelic distributions of previously described pharmacologically significant genes and variants with other population groups. We identified 22 translationally relevant pharmacogenomic variants and 18 clinically actionable guidelines with implications for drug dosing and treatment of conditions including heart disease, diabetes and cancer. We specifically observed increased poor and intermediate metabolizer phenotypes in the CYP2C9 (PM:19%, IM:44%) and CYP2C19 (PM:18%, IM:44%) genes.
© 2021. The Author(s), under exclusive licence to Springer Nature Limited.

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Year:  2021        PMID: 34824386     DOI: 10.1038/s41397-021-00262-4

Source DB:  PubMed          Journal:  Pharmacogenomics J        ISSN: 1470-269X            Impact factor:   3.245


  61 in total

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Journal:  Nat Rev Drug Discov       Date:  2004-09       Impact factor: 84.694

2.  Therapeutic drug safety for Indigenous Australians: how do we close the gap?

Authors:  Tilenka Thynne; Genevieve M Gabb
Journal:  Med J Aust       Date:  2016-01-18       Impact factor: 7.738

3.  Clinical Pharmacogenomics: Applications in Nephrology.

Authors:  Solomon M Adams; Karryn R Crisamore; Philip E Empey
Journal:  Clin J Am Soc Nephrol       Date:  2018-05-23       Impact factor: 8.237

4.  High and variable population prevalence of HLA-B*56:02 in indigenous Australians and relation to phenytoin-associated drug reaction with eosinophilia and systemic symptoms.

Authors:  Andrew A Somogyi; Daniel T Barratt; Elizabeth J Phillips; Kylies Moore; Fahmida Ilyas; Genevieve M Gabb
Journal:  Br J Clin Pharmacol       Date:  2019-07-19       Impact factor: 4.335

5.  Pharmacogenomic survey of Qatari populations using whole-genome and exome sequences.

Authors:  Ambily Sivadas; Vinod Scaria
Journal:  Pharmacogenomics J       Date:  2018-05-03       Impact factor: 3.550

6.  Burden of disease and injury in Aboriginal and Torres Strait Islander Peoples: the Indigenous health gap.

Authors:  Theo Vos; Bridget Barker; Stephen Begg; Lucy Stanley; Alan D Lopez
Journal:  Int J Epidemiol       Date:  2008-11-30       Impact factor: 7.196

Review 7.  Pharmacogenomics.

Authors:  Dan M Roden; Howard L McLeod; Mary V Relling; Marc S Williams; George A Mensah; Josh F Peterson; Sara L Van Driest
Journal:  Lancet       Date:  2019-08-05       Impact factor: 79.321

8.  Translating genotype data of 44,000 biobank participants into clinical pharmacogenetic recommendations: challenges and solutions.

Authors:  Sulev Reisberg; Kristi Krebs; Maarja Lepamets; Mart Kals; Reedik Mägi; Kristjan Metsalu; Volker M Lauschke; Jaak Vilo; Lili Milani
Journal:  Genet Med       Date:  2018-10-16       Impact factor: 8.822

9.  Population Pharmacogenomics for Precision Public Health in Colombia.

Authors:  Shashwat Deepali Nagar; A Melissa Moreno; Emily T Norris; Lavanya Rishishwar; Andrew B Conley; Kelly L O'Neal; Sara Vélez-Gómez; Camila Montes-Rodríguez; Wendy V Jaraba-Álvarez; Isaura Torres; Miguel A Medina-Rivas; Augusto Valderrama-Aguirre; I King Jordan; Juan Esteban Gallo
Journal:  Front Genet       Date:  2019-03-22       Impact factor: 4.599

Review 10.  Clinical and economic burden of adverse drug reactions.

Authors:  Janet Sultana; Paola Cutroneo; Gianluca Trifirò
Journal:  J Pharmacol Pharmacother       Date:  2013-12
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  1 in total

Review 1.  Ethnicity-based classifications and medical genetics: One Health approaches from a Western Pacific perspective.

Authors:  Hisham A Edinur; Siti Nor A Mat-Ghani; Geoffrey K Chambers
Journal:  Front Genet       Date:  2022-09-06       Impact factor: 4.772

  1 in total

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