Literature DB >> 29720721

Pharmacogenomic survey of Qatari populations using whole-genome and exome sequences.

Ambily Sivadas1,2, Vinod Scaria3,4.   

Abstract

The Arabs represent one of the most genetically heterogeneous populations characterized by a high prevalence of Mendelian disorders due to consanguinity. Population-scale genomic datasets provide a unique opportunity to understand the epidemiology of variants associated with differential therapeutic response. We analyzed publicly available genomic data for 1005 Qatari individuals encompassing five subpopulations. The frequencies of known and novel pharmacogenetic variants were compared with global populations. Impact of genetic substructure on the pharmacogenetic landscape of the population was studied. We report an average of three clinically actionable pharmacogenetic variants with FDA-recommended genetic testing per Qatari individual regardless of their genetic ancestry. We observed extensive differences in the frequencies of clinically actionable pharmacogenetic variants among the Qatari subpopulations. Our analysis revealed 3579 deleterious pharmacogenetic variants potentially altering the function of 1163 genes associated with 1565 drugs. This study has thus compiled the first comprehensive landscape of pharmacogenetic variants for any Arab population.

Entities:  

Mesh:

Year:  2018        PMID: 29720721     DOI: 10.1038/s41397-018-0022-8

Source DB:  PubMed          Journal:  Pharmacogenomics J        ISSN: 1470-269X            Impact factor:   3.550


  10 in total

1.  Pharmacogenomic analysis of a genetically distinct Indigenous population.

Authors:  Arvind Jaya Shankar; Sudhir Jadhao; Wendy Hoy; Simon J Foote; Hardip R Patel; Vinod Scaria; Brendan J McMorran; Shivashankar H Nagaraj
Journal:  Pharmacogenomics J       Date:  2021-11-25       Impact factor: 3.245

2.  Qatari Genotype May Contribute to Complications in Type 2 Diabetes.

Authors:  Youssra Dakroury; Stephen L Atkin; Soha R Dargham; Amal Robay; Juan Rodriguez-Flores; Ronald G Crystal; Alexandra E Butler
Journal:  J Diabetes Res       Date:  2020-06-08       Impact factor: 4.011

Review 3.  Genomics of rare genetic diseases-experiences from India.

Authors:  Sridhar Sivasubbu; Vinod Scaria
Journal:  Hum Genomics       Date:  2019-09-25       Impact factor: 4.639

4.  MTHFR and F5 genetic variations have association with preeclampsia in Pakistani patients: a case control study.

Authors:  Feriha Fatima Khidri; Yar Muhammad Waryah; Faiza Kamran Ali; Hina Shaikh; Ikram Din Ujjan; Ali Muhammad Waryah
Journal:  BMC Med Genet       Date:  2019-10-23       Impact factor: 2.103

5.  DALIA- a comprehensive resource of Disease Alleles in Arab population.

Authors:  Aastha Vatsyayan; Parul Sharma; Shrey Gupta; Sumiti Sandhu; Seetha Lakshmi Venu; Vandana Sharma; Bouabid Badaoui; Kaidi Azedine; Serti Youssef; Anna Rajab; Alaaeldin Fayez; Seema Madinur; Anop Ranawat; Kavita Pandhare; Srinivasan Ramachandran; Sridhar Sivasubbu; Vinod Scaria
Journal:  PLoS One       Date:  2021-01-13       Impact factor: 3.240

6.  Identification of pharmacogenetic variants from large scale next generation sequencing data in the Saudi population.

Authors:  Ewa Goljan; Mohammed Abouelhoda; Mohamed M ElKalioby; Amjad Jabaan; Nada Alghithi; Brian F Meyer; Dorota Monies
Journal:  PLoS One       Date:  2022-01-28       Impact factor: 3.240

7.  A population study of clinically actionable genetic variation affecting drug response from the Middle East.

Authors:  Puthen Veettil Jithesh; Mohammed Abuhaliqa; Najeeb Syed; Ikhlak Ahmed; Mohammed El Anbari; Kholoud Bastaki; Shimaa Sherif; Umm-Kulthum Umlai; Zainab Jan; Geethanjali Gandhi; Chidambaram Manickam; Senthil Selvaraj; Chinnu George; Dhinoth Bangarusamy; Rania Abdel-Latif; Mashael Al-Shafai; Zohreh Tatari-Calderone; Xavier Estivill; Munir Pirmohamed
Journal:  NPJ Genom Med       Date:  2022-02-15       Impact factor: 8.617

8.  Genetic Epidemiology of Medication Safety and Efficacy Related Variants in the Central Han Chinese Population With Whole Genome Sequencing.

Authors:  Junbo Tian; Jing Zhang; Zengguang Yang; Shuaisheng Feng; Shujuan Li; Shiqi Ren; Jianxiang Shi; Xinyue Hou; Xia Xue; Bei Yang; Hongen Xu; Jiancheng Guo
Journal:  Front Pharmacol       Date:  2022-02-23       Impact factor: 5.810

9.  Genetic Variation among Pharmacogenes in the Sardinian Population.

Authors:  Maria Laura Idda; Magdalena Zoledziewska; Silvana Anna Maria Urru; Gregory McInnes; Alice Bilotta; Viola Nuvoli; Valeria Lodde; Sandro Orrù; David Schlessinger; Francesco Cucca; Matteo Floris
Journal:  Int J Mol Sci       Date:  2022-09-02       Impact factor: 6.208

10.  Pharmacogenomic landscape of Indian population using whole genomes.

Authors:  S Sahana; Rahul C Bhoyar; Ambily Sivadas; Abhinav Jain; Mohamed Imran; Mercy Rophina; Vigneshwar Senthivel; Mohit Kumar Diwakar; Disha Sharma; Anushree Mishra; Sridhar Sivasubbu; Vinod Scaria
Journal:  Clin Transl Sci       Date:  2022-03-26       Impact factor: 4.689

  10 in total

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