Literature DB >> 34819376

Actinobacteria challenge the paradigm: A unique protein architecture for a well-known, central metabolic complex.

Eduardo M Bruch1, Pierre Vilela2, Lu Yang2,3, Alexandra Boyko2, Norik Lexa-Sapart2, Bertrand Raynal4, Pedro M Alzari2, Marco Bellinzoni1.   

Abstract

α-oxoacid dehydrogenase complexes are large, tripartite enzymatic machineries carrying out key reactions in central metabolism. Extremely conserved across the tree of life, they have been, so far, all considered to be structured around a high-molecular weight hollow core, consisting of up to 60 subunits of the acyltransferase component. We provide here evidence that Actinobacteria break the rule by possessing an acetyltranferase component reduced to its minimally active, trimeric unit, characterized by a unique C-terminal helix bearing an actinobacterial specific insertion that precludes larger protein oligomerization. This particular feature, together with the presence of an odhA gene coding for both the decarboxylase and the acyltransferase domains on the same polypetide, is spread over Actinobacteria and reflects the association of PDH and ODH into a single physical complex. Considering the central role of the pyruvate and 2-oxoglutarate nodes in central metabolism, our findings pave the way to both therapeutic and metabolic engineering applications.

Entities:  

Keywords:  Actinobacteria; central metabolism; integrative structural biology; macromolecular complexes; pyruvate dehydrogenase

Mesh:

Substances:

Year:  2021        PMID: 34819376      PMCID: PMC8640841          DOI: 10.1073/pnas.2112107118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  71 in total

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2.  Improved solubility of TEV protease by directed evolution.

Authors:  Susanne van den Berg; Per-Ake Löfdahl; Torleif Härd; Helena Berglund
Journal:  J Biotechnol       Date:  2005-09-15       Impact factor: 3.307

3.  MolProbity: More and better reference data for improved all-atom structure validation.

Authors:  Christopher J Williams; Jeffrey J Headd; Nigel W Moriarty; Michael G Prisant; Lizbeth L Videau; Lindsay N Deis; Vishal Verma; Daniel A Keedy; Bradley J Hintze; Vincent B Chen; Swati Jain; Steven M Lewis; W Bryan Arendall; Jack Snoeyink; Paul D Adams; Simon C Lovell; Jane S Richardson; David C Richardson
Journal:  Protein Sci       Date:  2017-11-27       Impact factor: 6.725

4.  Virulence of Mycobacterium tuberculosis depends on lipoamide dehydrogenase, a member of three multienzyme complexes.

Authors:  Aditya Venugopal; Ruslana Bryk; Shuangping Shi; Kyu Rhee; Poonam Rath; Dirk Schnappinger; Sabine Ehrt; Carl Nathan
Journal:  Cell Host Microbe       Date:  2011-01-20       Impact factor: 21.023

5.  Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling.

Authors:  P Schuck
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

6.  RamB is an activator of the pyruvate dehydrogenase complex subunit E1p gene in Corynebacterium glutamicum.

Authors:  Bastian Blombach; Annette Cramer; Bernhard J Eikmanns; Mark Schreiner
Journal:  J Mol Microbiol Biotechnol       Date:  2007-09-21

7.  Crystal structure of the truncated cubic core component of the Escherichia coli 2-oxoglutarate dehydrogenase multienzyme complex.

Authors:  J E Knapp; D T Mitchell; M A Yazdi; S R Ernst; L J Reed; M L Hackert
Journal:  J Mol Biol       Date:  1998-07-24       Impact factor: 5.469

8.  Complete Genome Sequence of the Type Strain Corynebacterium mustelae DSM 45274, Isolated from Various Tissues of a Male Ferret with Lethal Sepsis.

Authors:  Christian Rückert; Janine Eimer; Anika Winkler; Andreas Tauch
Journal:  Genome Announc       Date:  2015-09-10

9.  Real-space refinement in PHENIX for cryo-EM and crystallography.

Authors:  Pavel V Afonine; Billy K Poon; Randy J Read; Oleg V Sobolev; Thomas C Terwilliger; Alexandre Urzhumtsev; Paul D Adams
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-05-30       Impact factor: 7.652

Review 10.  Bio-based production of organic acids with Corynebacterium glutamicum.

Authors:  Stefan Wieschalka; Bastian Blombach; Michael Bott; Bernhard J Eikmanns
Journal:  Microb Biotechnol       Date:  2012-12-02       Impact factor: 5.813

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  2 in total

1.  Harnessing Rare Actinomycete Interactions and Intrinsic Antimicrobial Resistance Enables Discovery of an Unusual Metabolic Inhibitor.

Authors:  Dylan J McClung; Yongle Du; Dominic J Antonich; Bailey Bonet; Wenjun Zhang; Matthew F Traxler
Journal:  mBio       Date:  2022-05-24       Impact factor: 7.786

2.  How evolution dismantles and reassembles multienzyme complexes.

Authors:  Andrea Mattevi
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-22       Impact factor: 11.205

  2 in total

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