Jihye Jung1,2, Doreen Schachtschabel3, Michael Speitling3, Bernd Nidetzky1,2. 1. Austrian Centre of Industrial Biotechnology, A-8010 Graz, Austria. 2. Institute of Biotechnology and Biochemical Engineering, NAWI Graz, TU Graz, A-8010 Graz, Austria. 3. BASF SE, Carl-Bosch-Strasse 38, 67056 Ludwigshafen, Germany.
Abstract
Glycosylation in natural product metabolism and xenobiotic detoxification often leads to disaccharide-modified metabolites. The chemical synthesis of such glycosides typically separates the glycosylation steps in space and time. The option to perform the two-step glycosylation in one pot, and catalyzed by a single permissive enzyme, is interesting for a facile access to disaccharide-modified products. Here, we reveal the glycosyltransferase GT1 from Bacillus cereus (BcGT1; gene identifier: KT821092) for iterative O-β-glucosylation from uridine 5'-diphosphate (UDP)-glucose to form a β-linked disaccharide of different metabolites, including a C15 hydroxylated detoxification intermediate of the agricultural herbicide cinmethylin (15HCM). We identify thermodynamic and kinetic requirements for the selective formation of the disaccharide compared to the monosaccharide-modified 15HCM. As shown by NMR and high-resolution MS, β-cellobiosyl and β-gentiobiosyl groups are attached to the aglycone's O15 in a 2:1 ratio. Glucosylation reactions on methylumbelliferone and 4-nitrophenol involve reversible glycosyl transfer from and to UDP as well as UDP-glucose hydrolysis, both catalyzed by BcGT1. Collectively, this study delineates the iterative β-d-glucosylation of aglycones by BcGT1 and demonstrates applicability for the programmable one-pot synthesis of disaccharide-modified 15HCM.
Glycosylation in natural product metabolism and xenobiotic detoxification often leads to disaccharide-modified metabolites. The chemical synthesis of such glycosides typically separates the glycosylation steps in space and time. The option to perform the two-step glycosylation in one pot, and catalyzed by a single permissive enzyme, is interesting for a facile access to disaccharide-modified products. Here, we reveal the glycosyltransferase GT1 from Bacillus cereus (BcGT1; gene identifier: KT821092) for iterative O-β-glucosylation from uridine 5'-diphosphate (UDP)-glucose to form a β-linked disaccharide of different metabolites, including a C15 hydroxylated detoxification intermediate of the agricultural herbicide cinmethylin (15HCM). We identify thermodynamic and kinetic requirements for the selective formation of the disaccharide compared to the monosaccharide-modified 15HCM. As shown by NMR and high-resolution MS, β-cellobiosyl and β-gentiobiosyl groups are attached to the aglycone's O15 in a 2:1 ratio. Glucosylation reactions on methylumbelliferone and 4-nitrophenol involve reversible glycosyl transfer from and to UDP as well as UDP-glucose hydrolysis, both catalyzed by BcGT1. Collectively, this study delineates the iterative β-d-glucosylation of aglycones by BcGT1 and demonstrates applicability for the programmable one-pot synthesis of disaccharide-modified 15HCM.
Glycosylation
is a widespread type of chemical conjugation performed
on small molecules in natural product biosynthesis[1−3] and metabolite
detoxification.[1,3] Attachment of sugar residue(s)
increases the solubility, often defines the bioactivity, and directs
the cellular targeting of the metabolite.[4,5] In
biology, the task of glycosylation is handled by a class of sugar
nucleotide-dependent glycosyltransferases.[4,5] These
enzymes use sugar nucleotides as donors for glycosyl transfer to acceptors.[4,5] Glycosyltransferases offer precise α/β stereocontrol
of the glycosylation but differ widely in their substrate scope.[4−6] For example, detoxifying glycosyltransferases are often highly permissive
regarding the acceptor substrates used.[3,4] Assayed in vitro, some glycosyltransferases of secondary metabolism
can use a large diversity of donor and acceptor substrates.[3,7] Due to the interplay of different glycosyltransferases in biosynthesis,
the glycosylation on small molecules can give rise to considerable
structural diversity.[8,9] Products can be glycosylated at
multiple positions, exhibit a disaccharide, or even an oligosaccharide,
attached to the aglycone, or feature both modifications at the same
time.[8,9] Among the natural products, many (e.g.,
antibiotics like vancomycin;[10,11] flavonoids like quercetin
or luteolin;[12,13] fragrances and flavors like geraniol[1,5,14]) are found in different glycoside
forms and show modulation in function or potency due to change in
glycosylation pattern. The steviol glycosides imparting intense sweetness
to extracts of the Stevia plant are bis-glycosides, with a disaccharide (stevioside) or trisaccharide (rebaudioside
A) attached to the diterpene aglycone.[15,16] Our interest
here was on metabolite glycosylation with a disaccharide unit, which
is chemically challenging to install and not well explored for glycoside
synthesis. It prompted a study on glycosyltransferase-catalyzed preparation
of disaccharide-modified xenobiotics, with the purpose of establishing
a facile and broadly applicable route for metabolite neo-glycosylation.[10,17] Besides being widespread in natural products, glycosylation with
simple β-d-glucose disaccharides (e.g., β-gentiobiosyl,
β-d-glucosyl-(1→6)-β-d-glucosyl)
plays a significant role in the detoxification of herbicides (e.g.,
Picloram;[18] Diphenamid;[19] 3-phenoxy benzoic acid[20,21] derived from
pyrethroids) in plants. The major target of our inquiry was 15-hydroxy
cinmethylin (15HCM; 1, Figure ), which is phase I detoxification metabolite
of the pre-emergence herbicide cinmethylin (CM; 2, Figure ).[22−24] CM is a benzyl
ether derivative of the natural terpene 1,4-cineole that is currently
used in a commercialized product (Luximax) for integrated weed and
grass management.[22,25] Besides their importance as analytical
reference, disaccharide glucosides of 15HCM have interest for the
evaluation of biological efficacy and for the analysis of environmental
safety related to CM metabolism.
Figure 1
Enzymatic iterative glycosylation of BcGT1 to
form disaccharide-modified products. (A) Chemical structures of 15-hydroxy
cinmethylin (1, 15HCM), cinmethylin (2,
CM), 4-methylumbelliferone (3, 4MU), and 4-nitrophenol
(4, 4NP). 15HCM, 4MU, and 4NP were used as acceptors
of glycosylation by BcGT1 in this study. (B) Iterative
glycosylation of 15HCM by BcGT1. BcGT1 catalyzes the transfer of glucosyl residue (red balls) from UDP-glucose
to 15HCM, releasing 15HCM-β-d-glucoside (5), and to 15HCM-β-d-glucoside, forming 15HCM β-d-glucosyl-β-d-glucoside (6, disaccharides).
Enzymatic iterative glycosylation of BcGT1 to
form disaccharide-modified products. (A) Chemical structures of 15-hydroxy
cinmethylin (1, 15HCM), cinmethylin (2,
CM), 4-methylumbelliferone (3, 4MU), and 4-nitrophenol
(4, 4NP). 15HCM, 4MU, and 4NP were used as acceptors
of glycosylation by BcGT1 in this study. (B) Iterative
glycosylation of 15HCM by BcGT1. BcGT1 catalyzes the transfer of glucosyl residue (red balls) from UDP-glucose
to 15HCM, releasing 15HCM-β-d-glucoside (5), and to 15HCM-β-d-glucoside, forming 15HCM β-d-glucosyl-β-d-glucoside (6, disaccharides).The synthetic assembly of disaccharide glycosides
usually requires
a sequential glycosylation procedure with temporal coordination, and
potentially spatial separation, of the individual glycosylation steps
used.[13,26] Specific glycosyltransferases might be used
in a one-pot linear cascade reaction in which the 15HCM is first glycosylated
and the disaccharide then formed on the incipient 15HCM glucoside
(5, Figure ). However, such two-enzyme cascade transformations usually involve
a large parameter space for optimization and are thus challenging
to control for synthetic efficiency.[27,28] The option
to perform the iterative glycosylation by a single permissive enzyme
is important for facile access to disaccharide-modified metabolites.In this study, we identified the glycosyltransferase GT1 from Bacillus cereus (BcGT1; GenBank
identifier: KT821092) for iterative O-β-glucosylation
from uridine 5′-diphosphate (UDP)-glucose to build β-linked
disaccharide on different metabolites (15HCM, 1; 4-methylumbelliferone,
4MU, 3; 4-nitro-phenol, 4NP, 4; Figure ). The enzyme was
originally identified for glycosylation of flavonoids (e.g., kaempferol,
quercetin, apigenin, genistein, naringenin, luteolin).[29]BcGT1 was promising for the
current research by virtue of its permissive nature, previously assessed
for the formation of mono- and di-glucosylated products of various O- and S-acceptor substrates (e.g., fluorescein
methyl ester, 17-β-estradiol, honokiol, magnolol, p-nitrophenol, magnolol, 7-mercapto-4-methylcoumarin, p-nitrothiophenol, p-thiocresol).[30] Screening of glycosyltransferases for β-d-mono-glucosylation of 15HCM from UDP-glucose has recently shown
the disaccharide-modified product formed in low yield (∼11%)
from the BcGT1 reaction.[31] Based on the comprehensive analysis of time courses for the enzymatic
glycosylation of 15HCM combined with detailed product characterization
with high-resolution NMR and MS, we here reveal thermodynamic and
kinetic requirements for the selective formation of the disaccharide-modified
15HCM in near-quantitative yield. Collectively, our study shows the
iterative β-d-glycosylation of aglycones by BcGT1 and demonstrates synthetic applicability of the enzymatic
reaction for programmable one-pot disaccharide modification of 15HCM.
Materials and Methods
Chemicals and Reagents
Chemicals were from Carl Roth
(Karlsruhe, Germany) and Sigma-Aldrich (Vienna, Austria). 4MU (3, Figure ; ≥98%), 4NP (4, Figure ; ≥99%) and 4NP-β-d-glucoside (≥98%) were from Sigma-Aldrich. 4MU-β-d-glucoside, UDP disodium salt, and UDP-glucose disodium salt
were from Carbosynth (Compton, U.K.). 15HCM (1, Figure ; ≥99.5%)
and 15HCM β-d-glucoside (5, Figure ; ≥99%) were provided
by BASF. Note: 15HCM is a racemic mixture of the (3R, 5R, 6S) and (3S, 5S, 6R) forms (Figure ). 15HCM and the glycosylated
derivatives thereof are toxic and irritant. Proper care was taken
in their handling. Calf intestine phosphatase (CIP, 10 000
U/mL) was from New England Biolabs (Frankfurt am Main, Germany).
Enzymes
BcGT1 (GenBank accession number: KT821092)[30] was produced in Escherichia coli BL21(DE3). The gene optimized for expression in E.
coli (Supporting Information) was inserted in pET15b as expression plasmid. The construct used
encodes the native BcGT1 without purification tag.
Cells were cultivated at 37 °C and 110 rpm in 1 L baffled shake
flasks containing 250 mL of Luria-Bertani (LB) medium supplemented
with 115 μg mL–1 ampicillin. At an optical
density (600 nm) of ∼1.0, the cells were induced with 1 mM
isopropyl β-d-1-thiogalactopyranoside and incubated
at 18 °C for 20 h. Centrifuged cells (Sorvall RC-5B Superspeed
Centrifuge; DuPont, Wilmington, DE; 4 °C and 4500g for 25 min) were suspended (0.31 g cells/mL) in sodium phosphate
buffer (25 mM, pH 7.0) containing 5 mM dithiothreitol. The suspension
was sonicated using Fisherbrand Model 505 Sonic Dismembrator (Waltham,
MA; 10 s on, 20 s off, amplitude 30%, 6 min total on-time). Cell-free
extract was cleared by centrifugation at 4500g and
4 °C for 60 min and filtration with a 1.2 μm filter. BcGT1 was purified by ion-exchange chromatography with a
HiTrap DEAE FF column (5 mL, Cytiva, Chicago, IL) at 4 °C. The
column was equilibrated in 25 mM sodium phosphate buffer (pH 7.0)
containing 5 mM dithiothreitol, and 5–10 mL of cell extract
(900–2000 mg protein) was loaded. BcGT1 was
eluted at 0.9 mL/min in the same buffer containing 100 mM NaCl. Eluted
fractions containing BcGT1 were desalted and concentrated
at 4 °C and 4500g in Vivaspin Turbo 15 PES tubes
(10 kDa molecular mass cutoff, Sartorius, Göttingen, Germany).
The enzyme solution (45–55 mg/mL, >90% purity) was stored
in
25 mM sodium phosphate (pH 7.0) at −80 °C. The purified
enzyme was stable for at least 2 months.Sucrose synthase from
soybean (Glycine max, GmSusy) was produced and purified as described in earlier work.[32,33] The enzyme is equipped with an N-terminal Strep-Tag II. Enzyme purity
was confirmed by SDS PAGE. Its specific activity as isolated was 4.1
U/mg for sucrose cleavage and 3.5 U/mg for sucrose synthesis.Protein was determined with a DeNovix DS-11+ spectrophotometer
(DeNovix, Inc., Wilmington, DE). Molecular mass and molar extinction
coefficients were calculated using the ProParam tool in ExPASy.
Glycosylation Reactions
Reactions were performed at
0.3 mL total volume in Eppendorf tubes, using agitation at 400 rpm
with Thermomixer Comfort (Eppendorf, Hamburg, Germany). The temperature
was 37 °C. The assay/reaction conditions used (acceptor substrate,
donor, buffer, and co-solvent concentration) are summarized in Table . Unless stated, HEPES
buffer (100 mM, pH 7.4) containing 5 mM MgCl2 was used.
Reactions were started by adding enzyme (0.5–5.0 mg/mL) to
substrate preincubated at 37 °C for 2 min. To stop the reaction,
ice-cold acetonitrile was added to sample (1:1, by volume) and incubation
was done on ice for 10 min. Precipitated enzyme was filtered off,
and the liquid was analyzed further. Samples were taken at suitable
times to measure the initial reaction rates (≤1 h) and to determine
the course of conversion (up to 24 h). Consumption of the acceptor
substrate and formation of glycosylated products were measured by
HPLC. Reactions were typically performed over 24 h with samples taken
regularly. One unit of activity is the enzyme amount consuming 1 μmol
acceptor/min under the specified conditions.
Table 1
Specific
Activities of BcGT1 in (De)glycosylation Reactions
of 15HCM, 4MU, 4NP, and the Corresponding
β-d-Glucosidesa,f
substrate
donor
concentration
(mM) donor/substrate
substrate consumption (nmol/(min mg))
mono-glucoside formation (nmol/(min mg))
disaccharide product
formation (nmol/(min mg))
aglycone (re)formation (nmol/(min mg))
15HCM
UDP-glucose
0.5/10
34.9b
31.7b
0.24b
N.D.
0.5/1
16.8
16.2
N.D.
N.D.
1/1
31.6 (39.1)b
30.5(38.1)b
N.D.(2.3)b
N.D.
2/1
49.2 (30.9)b
47.2 (30.2)b
2.1 (2.3)b
N.D.
5/1
47.3
44
2.8
N.D.
15HCM-β-d-glucoside
UDP-glucose
2/1
4.6
N.D.
4.6
N.D.
UDP
1/1(1/5)d
N.D.
(N.D.)d
N.D. (N.D.)d
N.D. (N.D.)d
N.D. (N.D.)d
4MU
UDP-glucose
2/1
211.7
206.3
N.D.
0.081
4MU-β-d-glucoside
UDP-glucose
2/1
0.35 (0.16)c
N.D. (N.D.)c
0.15 (0.14)c
0.24 (0.075)c
UDP
2/1 (1/1)d
1.25 (1.16)d
N.D. (N.D.)d
0.0025 (N.D.)d
1.11 (1.16)d
none
none/1
0.37 (0.05)e
N.D. (N.D.)e
N.D. (N.D.)e
0.37 (0.05)e
4NP
UDP-glucose
2/1
10.1
9.4
0.8
0.5
4NP-β-d-glucoside
UDP-glucose
2/1
1.3 (0.8)c
N.D. (N.D.)c
0.9 (0.5)c
0.4
(0.3)c
The specific activities
(nmol/(min
mg)) are from triplicate determinations (N = 3) and
have standard errors of 10% or less of the reported mean value. Conversion
data and product distributions are from a single experiment, confirmed
in one biological replicate (N = 2).
UDP-glucose was regenerated by GmSusy (0.05 mg/mL, 0.21 Ub; 0.1
mg/mL, 0.41 Uc) and sucrose (100 mM). HEPES
buffers (100 mM, pH 7.0 for 15HCM and pH 7.4 for 4MU-β-d-glucoside and 4NP-β-d-glucoside) containing 5 mM
MgCl2 were used.
UDP-glucose was regenerated by GmSusy (0.05 mg/mL,
0.21 Ub; 0.1
mg/mL, 0.41 Uc) and sucrose (100 mM). HEPES
buffers (100 mM, pH 7.0 for 15HCM and pH 7.4 for 4MU-β-d-glucoside and 4NP-β-d-glucoside) containing 5 mM
MgCl2 were used.
Data were obtained with GmSusy (0.1 mg/mL, 0.35
U) and fructose (100 mM) for UDP
regeneration. Tris-HCl buffer (50 mM, pH 9.0) containing 5 mM MgCl2 was used. DMSO concentration was 4%. BcGT1
was 1 mg/mL for 15HCM-β-d-glucoside and 3 mg/mL for
4MU-β-d-glucoside.
To remove nucleotide diphosphate
that co-purified with BcGT1, the enzyme (5 mg/mL,
0.11 mM) was incubated with calf intestine phosphatase (20 U, 2 μL)
for 30 min at 37 °C. Sodium phosphate buffer (100 mM, pH 7.4)
containing 5 mM MgCl2 was used. Reaction was initiated
by the addition of 4MU-β-d-glucoside (4% DMSO).
N.D., not detectable.
The specific activities
(nmol/(min
mg)) are from triplicate determinations (N = 3) and
have standard errors of 10% or less of the reported mean value. Conversion
data and product distributions are from a single experiment, confirmed
in one biological replicate (N = 2).UDP-glucose was regenerated by GmSusy (0.05 mg/mL, 0.21 Ub; 0.1
mg/mL, 0.41 Uc) and sucrose (100 mM). HEPES
buffers (100 mM, pH 7.0 for 15HCM and pH 7.4 for 4MU-β-d-glucoside and 4NP-β-d-glucoside) containing 5 mM
MgCl2 were used.UDP-glucose was regenerated by GmSusy (0.05 mg/mL,
0.21 Ub; 0.1
mg/mL, 0.41 Uc) and sucrose (100 mM). HEPES
buffers (100 mM, pH 7.0 for 15HCM and pH 7.4 for 4MU-β-d-glucoside and 4NP-β-d-glucoside) containing 5 mM
MgCl2 were used.Data were obtained with GmSusy (0.1 mg/mL, 0.35
U) and fructose (100 mM) for UDP
regeneration. Tris-HCl buffer (50 mM, pH 9.0) containing 5 mM MgCl2 was used. DMSO concentration was 4%. BcGT1
was 1 mg/mL for 15HCM-β-d-glucoside and 3 mg/mL for
4MU-β-d-glucoside.To remove nucleotide diphosphate
that co-purified with BcGT1, the enzyme (5 mg/mL,
0.11 mM) was incubated with calf intestine phosphatase (20 U, 2 μL)
for 30 min at 37 °C. Sodium phosphate buffer (100 mM, pH 7.4)
containing 5 mM MgCl2 was used. Reaction was initiated
by the addition of 4MU-β-d-glucoside (4% DMSO).N.D., not detectable.
Reversed-Phase HPLC Analytics
Samples
were analyzed
on an Agilent 1200 HPLC system (Santa Clara, CA) equipped with a Kinetex
EVO C18 column (5 μm, 100 Å, 150 × 4.6 mm; Phenomenex,
Aschaffenburg, Germany) and a UV–vis detector. The column temperature
was 45 °C. The injection volume was 5–10 μL. The
eluent flow rate was 1 mL/min. The column was equilibrated in water
containing 0.1% formic acid. Elution was done with an increasing gradient
in acetonitrile containing 0.1% formic acid, starting from 5%.
Reactions
with 15HCM and 15HCM-β-d-Glucoside
A gradient
of 20–75% acetonitrile over 5.5 min was used.
The column was washed with 75% acetonitrile for 2 min and equilibrated
with 20% acetonitrile for 4.5 min. 15HCM and its mono- and di-β-d-glucosides were detected at 203 nm. Additionally, for the
separation of 15HCM di- and tri-β-d-glucosides, isocratic
method (20% acetonitrile for 20 min and 25% acetonitrile for 10 min)
and gradient method (20–30% of acetonitrile for 40 min) were
used. The column was washed with 30% acetonitrile for 3 min and equilibrated
with 20% acetonitrile for 3 min. The product separation is shown in
the Results and Discussion section (see also Supporting Figure S1).
Reactions with 4MU and
4MU-β-d-Glucoside
A gradient of 10–60%
acetonitrile over 15 min was used. The
column was washed with 90% acetonitrile for 2 min and equilibrated
with 10% acetonitrile for 3 min. The 4MU and its β-d-glucosides were detected at 220 and 320 nm.
Reactions
with 4NP and 4NP-β-d-Glucoside
A gradient
of 5–60% acetonitrile over 15 min was used. The
column was washed with 60% acetonitrile for 2 min and equilibrated
with 5% acetonitrile for 3 min. 4NP and 4NP-β-d-glucoside
were detected at 220 and 405 nm, respectively.
Isolation of
Disaccharide-Modified 15HCM
The glycosylated
products of 15HCM-β-d-glucoside (Figure , P1 and P2) were
isolated from the enzymatic reaction, and their chemical identities
were determined from MS and NMR analyses. Synthesis was performed
with BcGT1 (1 mg/mL) using 15HCM-β-d-glucoside (5 mM) in water. UDP-glucose was supplied in situ from UDP (1 mM) and sucrose (100 mM) using GmSusy
(0.1 mg/mL, 0.41 U). The total volume was 0.9 mL. The temperature
was 37 °C. After 24 h, 15HCM-β-d-glucoside was
consumed up to 50% (∼2.5 mM). The enzymes were filtered off.
The products were purified by reversed-phase HPLC using the Kinetex
EVO C18 column used also for analytical determinations. Pooled fractions
(25 mL) were concentrated to about one-twentieth the original volume
using a Heidolph Laborota 4000 rotary evaporator equipped with a vacuubrand
PC2001 pump and CVC2000II controller (Wertheim, Germany; 40 °C,
<230 mbar) and then lyophilized overnight with a freeze dryer Alpha
1-4 (Martin Christ Gefriertrocknungsanlagen GmbH, Osterode am Harz,
Germany) at −40 °C and 0.020 mbar. The isolated products
were used for MS and NMR analyses.
Figure 2
Enzymatic glycosylation of 15HCM and 15HCM-β-d-glucoside
by BcGT1. Reactions of 15HCM (A, B) and 15HCM-β-d-glucoside (C, D) with BcGT1 (0.5 mg/mL) and
UDP-glucose are shown. Initial rates are shown in Table . (A) Glycosylation of 15HCM
(closed circles). Products were 15HCM-β-d-glucoside
(open circles) and disaccharides (open triangles). Disaccharides were
obtained as the sum of P1 and P2 shown in
(B). (B) HPLC traces of glycosylation of 15HCM (0 h, blue; 0.5 h,
purple; 3.7 h, orange). The inset is the close-up of disaccharides
(P1, 4.3 ± 0.2 min; P2, 4.0 ±
0.1 min) formed by BcGT1. (C) Glycosylation of 15HCM-β-d-glucoside (open circles) to disaccharides (open triangles).
Disaccharides were obtained as the sum of P1 and P2, as shown in (D). Reaction of 15HCM-β-d-glucoside
lacking BcGT1 is shown in open squares. (D) HPLC
traces of glycosylation of 15HCM-β-d-glucoside (0 h,
blue; 0.5 h, purple; and 2 h, orange).
Enzymatic glycosylation of 15HCM and 15HCM-β-d-glucoside
by BcGT1. Reactions of 15HCM (A, B) and 15HCM-β-d-glucoside (C, D) with BcGT1 (0.5 mg/mL) and
UDP-glucose are shown. Initial rates are shown in Table . (A) Glycosylation of 15HCM
(closed circles). Products were 15HCM-β-d-glucoside
(open circles) and disaccharides (open triangles). Disaccharides were
obtained as the sum of P1 and P2 shown in
(B). (B) HPLC traces of glycosylation of 15HCM (0 h, blue; 0.5 h,
purple; 3.7 h, orange). The inset is the close-up of disaccharides
(P1, 4.3 ± 0.2 min; P2, 4.0 ±
0.1 min) formed by BcGT1. (C) Glycosylation of 15HCM-β-d-glucoside (open circles) to disaccharides (open triangles).
Disaccharides were obtained as the sum of P1 and P2, as shown in (D). Reaction of 15HCM-β-d-glucoside
lacking BcGT1 is shown in open squares. (D) HPLC
traces of glycosylation of 15HCM-β-d-glucoside (0 h,
blue; 0.5 h, purple; and 2 h, orange).
MS Analysis
The glycosylated products from the reaction
of BcGT1 with 15HCM-β-d-glucoside
were analyzed. An UltiMate3000 system (Thermo Fisher Scientific, MA)
equipped with a Luna C18 column (5 μm, 100 Å, 3.0 ×
250 mm, Phenomenex, CA) and a high-resolution mass spectrometer (Q
Exactive Hybrid Quadrupole-Orbitrap, Thermo Fisher Scientific) was
used. A gradient (5 to 100%) of acetonitrile in 5 mM ammonium acetate
buffer (pH ∼ 7) over 5 min was used. The column was washed
with 100% acetonitrile for 5 min and then 5% acetonitrile for 25 min.
The flow rate was 1 mL/min. The column temperature was 30 °C.
The UV–vis detector was set to scan the range 190–450
nm. Masses were scanned over the range of m/z 70–1000 with positive/negative switching electrospray
ionization mode. The masses of bis-glucosides (614.3;
[M + H]+, 615.3; [M + NH4]+, 632.3;
[M – H]−, 613.3; [M + CH3COO]−, 673.3) and tri-glucosides (776.4;
[M + H]+, 777.3; [M + NH4]+, 794.4;
[M – H]−, 775.3; [M + CH3COO]−, 835.4) were also analyzed in extracted-ion chromatogram.
The obtained data are shown in Supporting Figures S2 and S3.
NMR
The disaccharide-modified 15HCM
isolated from the
reaction with 15HCM-β-d-glucoside was analyzed. The
products were taken up in DMSO-d6 (99.8% D) for NMR measurements.
A Bruker Avance Neo 700 spectrometer equipped with a TCI-cryoprobe
(Bruker Biospin, Rheinstetten, Germany) and Spectrus processor 2018.2
software (ACD Labs, Toronto, Canada) were used at 298 K. 1H- and 13C NMR, HSQC–DEPT, COSY, and HMBC spectra
were recorded. The chemical shifts of DMSO-D6 were 2.50
and 39.52 ppm. The obtained data are shown in Supporting Tables S1 and S2 and Figures S4–S9.
Protein
Structural Modeling and Docking
The PyMOL molecular
graphics system (incentive version; Schrödinger, LLC) was used
for structural alignments. Structure modeling and docking were performed
with YASARA v. 18.2.7 (Yasara Biosciences GmbH, Vienna, Austria). BcGT1 model was built upon the crystal structure of CalG2
(calicheamicin glycosyltransferase) bound with thymidine-5′-diphosphate
and calicheamicin T0 (PDB accession number 3RSC). YASARA’s homology modeling macro
was used. All ligands (15HCM β-d-glucosyl-(1→4)-β-d-glucoside, 15HCM β-d-glucosyl-(1→6)-β-d-glucoside, UDP-glucose) were generated using the Grade Web
Server (http://grade.globalphasing.org/cgi-bin/grade/server.cgi). Local ligand docking was carried out with Autodock Vina[34] using standard parameters. Following the docking
runs, the obtained poses were optimized by energy using the standard
macro included in YASARA, except that the number of runs was increased
to 50. Similar docking poses (<5.0 Å RMSD in superposition
based on the protein structure) were clustered. For dockings of β-d-cellobiosyl- and β-d-gentiobiosyl-15HCM, the
calicheamicin T0 was deleted and a simulation cell of 15 Å ×
10 Å × 10 Å was placed at the former location. The
same procedure was used for docking of UDP-glucose, except that thymidine-5′-diphosphate
was removed.Docking poses/clusters were evaluated by their
associated free energy and mechanistic plausibility. The protonation
states of all other protein residues were set automatically for a
pH of 7.00. The calculated binding energies of β-d-cellobiosyl-
and β-d-gentiobiosyl-15HCM were 7.9 ± 0.3 (n = 10) and 9.2 ± 0.3 (n = 5) kcal
mol–1, respectively, corresponding to dissociation
constants of 1.6 and 0.2 μM. The binding energy of UDP-glucose
was 7.9 ± 1.0 (n = 9) kcal mol–1, corresponding to a dissociation constant of 1.7 μM. The Z-score for the homology model of BcGT1
was −1.94.
Results and Discussion
Iterative Glycosylation
of 15HCM
Time course of the BcGT1 reaction
with 15HCM (1.0 mM; 4% DMSO, by volume) and
UDP-glucose (2.0 mM) is shown in Figure A. The 15HCM was converted rapidly to ∼44%
within about 1 h. This corresponded to a specific activity of BcGT1 of 49.2 nmol/(min mg). The reaction slowed down later
and leveled out at ∼73% conversion of the initial 15HCM. The
15HCM β-d-glucoside was the main product, formed in
∼60% of the 15HCM converted. The remainder ∼13% of the
15HCM converted was a mixture of likely disaccharide-modified products
of the 15HCM, as follows. Figure B shows a superimposition of HPLC traces of samples
from the reaction. Besides the 15HCM β-d-glucoside
peak, two additional peaks, labeled P1 and P2 in the HPLC trace, emerged in correspondence to the reaction progress.As judged from their elution times, the two peaks represent compounds
more polar than the 15HCM β-d-glucoside. HPLC with
ESI-MS detection showed the same primary mass for the main constituent
in each peak (614; 615, [M + H]+; 637.6, [M + Na]+; 653.6, [M + K]+), corresponding to 15HCM with two glucosyl
residues attached.[31] From their corresponding
peak areas, P1 and P2 were present in a
ratio of approximately 2:1. The ratio of the two peaks did not change,
dependent on conditions varied or variable, including the enzyme concentration
used, the degree of 15HCM conversion, or the overall amount of P1 and P2 formed.The implied reaction
sequence, 15HCM → 15HCM β-d-glucoside →
15HCM β-d-glucosyl-β-d-glucoside, was
examined in an experiment that offered 15HCM
β-d-glucoside (1.0 mM) as enzyme substrate for glycosylation
from UDP-glucose (2.0 mM). The time course of 15HCM β-d-glucoside consumption is shown in Figure C. The same peaks P1 and P2 observed from the enzymatic reaction of 15HCM (Figure B) were formed in
identical 2:1 ratio in correspondence to the usage of the 15HCM β-d-glucoside (Figure D). From the data in Figure C at times ≤2 h, the specific BcGT1 activity for glycosylation of 15HCM β-d-glucoside
was determined as 4.6 nmol/(min mg) (Table ). A roughly similar specific activity of
∼2.3 nmol/(min mg) was estimated from Figure A for the formation of the proposed 15HCM
β-d-glucosyl- β-d-glucosides (sum of P1 and P2). These specific activities were lower
by about 10-fold than the specific BcGT1 activity
for 15HCM β-d-glucoside formation of 47.2 nmol/(min
mg).
Identification and Structural Characterization of Disaccharide-Modified
15HCM
Products of iterative glycosylation of 15HCM were isolated
by preparative HPLC, using the same column as applied in the analytical
determinations. Different gradient methods were used in an effort
to optimize the separation (Figure and Supporting Figure S1). Using isocratic elution with 20% acetonitrile (Figure ), peak P1 was
not further separated and appeared to be from a single compound. Peak P2 was separated into one major and three smaller peaks, as
shown in Figure ,
suggesting a complex composition. Isolated peaks P1 (∼0.73
mg) and P2 (fractions a–d; ∼0.33 mg) were
characterized by high-resolution NMR and MS. The results are shown
in Figure , with additional
data shown in Supporting Figures S2–S9 and Tables S1 and S2. Peak P1 (Figure ) was assigned unambiguously
the chemical structure of 15HCM β-d-glucosyl-(1→4)-β-d-glucoside (Supporting Table S1, Supporting Figures S2, S4–S8). The primary glycosidic linkage with
the hydroxy group of 15HCM was indicated by the correlation of C22
(CH, 4.25 ppm, 101.88 ppm) with C15 (CH2, 4.62 ppm and
4.86 ppm, 67.45 ppm), as shown in Supporting Figure S8. Iterative glycosylation was observed on C25 (CH, 3.34 ppm,
80.57 ppm) of the primary glucosyl residue showing correlation with
C33 (CH, 4.26 ppm, 103.22 ppm) of the secondary glucosyl residue,
clearly indicating a β(1→4) bond (Supporting Figure S8). Additionally, proton and carbon peaks
of C22 of the diastereomeric structures of 15HCM β-d-glucosyl-(1→4)-β-d-glucoside were observed
at a ratio of approximately 1:1 (Supporting Figures S4 and S5). By contrast, the proton and carbon peaks of C33
of the diastereomeric structures were hardly observed, plausibly because
of their considerable distance from the chiral center C5 (Supporting Figures S4 and S5). Peak P2 was shown to contain 15HCM β-d-glucosyl-(1→6)-β-d-glucoside (Figure ) as the major component (∼85%; fraction b; Supporting Table S2, Supporting Figures S3 and S9), as revealed by NMR and MS. Three trisaccharide glycosides of 15HCM
were additionally present (total ∼15%; fractions a, c, and
d; MS data in Supporting Figure S3). Despite
the mixture, the glycosidic linkages of the disaccharide-modified
15HCM were clearly identified from 2D-NMR spectra (Supporting Figure S9). Relevant signals from C22 (CH, 4.19
ppm, 102.22 ppm), C33 (CH, 4.30 ppm, 103.79 ppm), and C29 (CH2, 3.60 ppm/4.01 ppm, 68.98 ppm) were revealed in the HSQC
spectra (Supporting Figure S9B,C). In HMBC
spectra, correlation of the C22 proton and the C15 carbon identified
the glycoside on 15HCM (Supporting Figure S9D), while the correlation of the C33 proton and the C29 carbon showed
the disaccharide (Supporting Figure S9D). Additionally, correlation between the two C29 protons and the
C33 carbon was shown (Supporting Figure S9E). From these results, and considering the strict β stereoselectivity
of the enzyme in glycosylation, the formed disaccharide linkage was
assignable clearly as β(1→6), implying a β-gentiobiosyl
unit attached to 15HCM.
Figure 3
Disaccharide products from the reaction of 15HCM-β-d-glucoside with BcGT1. (A) HPLC traces of
product
separation. The isocratic method (20% of acetonitrile in water, both
solvents contain 0.1% formic acid) was used. 15HCM-β-d-glucoside (gray line) was eluted at 15 min. After incubation for
23 h (black line), 15HCM-β-d-glucoside was converted
to P1 (13.1 min) and P2 (7.5–9.3
min; a, 7.5 min; b, 8.1 min; c, 8.8 min; d, 9.3 min). (B) Chemical
structures of product P1 (15HCM-β-d-cellobioside)
and P2 (15HCM-β-d-gentiobioside). The
products were identified by MS and NMR analysis, as shown in Supporting Tables S1 and S2 and Supporting Figures S2–S9. The a, c, and d of P2 are trisaccharide-modified products
of 15HCM as shown in Supporting Figure S3.
Disaccharide products from the reaction of 15HCM-β-d-glucoside with BcGT1. (A) HPLC traces of
product
separation. The isocratic method (20% of acetonitrile in water, both
solvents contain 0.1% formic acid) was used. 15HCM-β-d-glucoside (gray line) was eluted at 15 min. After incubation for
23 h (black line), 15HCM-β-d-glucoside was converted
to P1 (13.1 min) and P2 (7.5–9.3
min; a, 7.5 min; b, 8.1 min; c, 8.8 min; d, 9.3 min). (B) Chemical
structures of product P1 (15HCM-β-d-cellobioside)
and P2 (15HCM-β-d-gentiobioside). The
products were identified by MS and NMR analysis, as shown in Supporting Tables S1 and S2 and Supporting Figures S2–S9. The a, c, and d of P2 are trisaccharide-modified products
of 15HCM as shown in Supporting Figure S3.An interesting NMR observation
was that in the β(1→6)
disaccharide product, both anomeric glucosyl carbons (C22, C33) showed
double doublets (Supporting Figure S9B).
In the β(1→4) disaccharide product, by contrast, only
the C22 gave a double doublet while the C33 signal was a single doublet.
Considering that the 15HCM used was a mixture of two stereoisomers,
the double doublet was plausibly explained as diastereomeric split
of signal for the β-glucosyl carbon (C22) immediately attached
to the isomeric 15HCM. Diastereomeric split for C33 in the β-gentiobiosyl
product can probably be attributed to through-space interactions with
the 15HCM moiety enabled by the relatively high torsional mobility
of the β(1→6) linked D-glucosyl residue. Lacking rotational
freedom in the β-cellobiosyl product, analogous through-space
interactions are not possible for the β(1→4) linked glucosyl
residue and diastereomeric split of C33 signal is therefore not observed.
Our interpretation is consistent with the literature showing diastereomeric
split of signal for the anomeric proton in the distal sugar of a β(1→6)
disaccharide glycoside, (7S)- and (7R)-phenylcyanomethyl 1′-O-α-L-rhamnosyl-(1→6)-β-d-glucosides.[35]
Thermodynamic
and Kinetic Requirements for Iterative Glycosylation
of 15HCM
Enzymatic reactions were performed in which the
UDP-glucose concentration (0.5–5.0 mM) was varied at a constant
concentration of 15HCM (1.0 mM). Figure shows the results. The 15HCM conversion
increased linearly depending on the UDP-glucose supplied, consistent
with the effect of mass action. The experiment in which 1.0 mM UDP-glucose
was used at once (Figure B) or was added in two portions of 0.5 mM (Figure A) gave the same 15HCM conversion
due to the formation of 15HCM β-d-glucoside as the
sole product. An equilibrium constant of ∼40 (=[15HCM-β-d-glucoside][UDP]/[15HCM][UDP-glucose]) could be estimated from
the concentration ratios of substrates and products at apparent equilibrium
for the single-step glycosylation reaction (after 24 h), 15HCM + UDP-glucose
↔ 15HCM β-d-glucoside + UDP.
Figure 4
Effects of UDP-glucose
concentration on enzymatic glycosylation
of 15HCM by BcGT1. 15HCM (closed circles) was used
with DMSO (4%, v/v) as co-solvent. BcGT1 was 0.5
mg/mL. UDP-glucose concentration was 0.5 mM (A), 1 mM (B), 2 mM (C),
and 5 mM (D). Red dotted lines indicate secondary addition of UDP-glucose
(A, 0.5 mM; C, 2 mM). Products are 15HCM-β-d-glucoside
(open circles) and disaccharides (open triangles). Disaccharides were
obtained as a sum of P1 and P2, as shown
in Figure . Initial
rates are shown in Table .
Effects of UDP-glucose
concentration on enzymatic glycosylation
of 15HCM by BcGT1. 15HCM (closed circles) was used
with DMSO (4%, v/v) as co-solvent. BcGT1 was 0.5
mg/mL. UDP-glucose concentration was 0.5 mM (A), 1 mM (B), 2 mM (C),
and 5 mM (D). Red dotted lines indicate secondary addition of UDP-glucose
(A, 0.5 mM; C, 2 mM). Products are 15HCM-β-d-glucoside
(open circles) and disaccharides (open triangles). Disaccharides were
obtained as a sum of P1 and P2, as shown
in Figure . Initial
rates are shown in Table .Excess of UDP-glucose over 15HCM
was important for the formation
of the disaccharide-modified 15HCM, as shown in Figures A and 4C–D.
Using UDP-glucose in twofold excess (2.0 mM; Figure A), the disaccharide glucosides were released
at ∼0.13 mM, representing ∼60% of the total 15HCM glucosides
formed under these conditions. The 15HCM conversion was 72%. Experiment
in which UDP-glucose was added in two portions of 2.0 mM, as shown
in Figure C, revealed
iteratively glycosylated products (0.47 mM) released in the same amount
overall as the 15HCM β-d-glucoside (0.53 mM). The 15HCM
was converted completely. Interestingly, the concentration of 15HCM
β-d-glucoside hardly changed after the UDP-glucose
addition, despite the fact that ∼40% 15HCM substrate was still
available at the time. The disaccharide-modified products were formed
in a larger amount only after UDP-glucose addition. Dynamic equilibrium
between singly and iteratively glycosylated products of the 15HCM
was suggested. Effect of the fresh UDP-glucose was to shift the equilibrium
ratio between the two products, with the net result of accumulation
solely of the disaccharide-modified 15HCM (Figure C).Using 5.0 mM UDP-glucose, the 15HCM
was converted fully in a single-batch
reaction (Figure D).
The disaccharide-modified products accumulated in an overall concentration
(0.56 mM) slightly exceeding that of the 15HCM β-d-glucoside
(0.44 mM). Kinetically, the disaccharide glucosides continued to be
formed after the point of 15HCM β-d-glucoside released
at maximum concentration (∼0.5 mM). The results show that even
at a high ratio of UDP-glucose/15HCM, the enzymatic glycosylation
yielded a mixture of singly and iteratively glycosylated products.
Initial rate analysis indicated that further increase in donor/acceptor
ratio resulting from an increase in the UDP-glucose concentration
would likely not be efficient. Specific BcGT1 activities
of 15HCM β-d-glucoside formation of 16 nmol/(min mg),
31 nmol/(min mg), 47 nmol/(min mg), and 44 nmol/(min mg) were determined
for reactions at 0.5 mM (Figure A), 1.0 mM (Figure B), 2.0 mM (Figures A and 4C), and 5.0 mM UDP-glucose
(Figure D), respectively.
Disaccharide Modification of 15HCM with Product Control
To obtain better control over the glycosylated products formed from
15HCM than was possible by varying the donor/acceptor ratio with UDP-glucose,
we turned to a coupled reaction of BcGT1 and sucrose
synthase, with the idea of supplying the UDP-glucose donor in situ from sucrose and UDP.[36−39] We considered that the sucrose
synthase reaction might enable a constant steady-state level of UDP-glucose
during the synthesis, contrary to the continuously changing conditions
when UDP-glucose is used directly. We were pleased to discover conditions
achieving selective production of the disaccharide-modified product
at full conversion of the 15HCM substrate, as shown in Figure .
Figure 5
Enzymatic glycosylation
of 15HCM with UDP-glucose regeneration.
UDP-glucose was regenerated from sucrose conversion by GmSusy and UDP. 15HCM (A, B, 1 mM; C, 10 mM) was used. DMSO (A, B,
4%; C, 10%) was used as a co-solvent. UDP concentrations were 1 mM
(A), 2 mM (B), and 0.5 mM (C). Closed circles are 15HCM. Open circles
are 15HCM-β-d-glucoside. Open triangles are disaccharide
forms of 15HCM, a sum of P1 and P2 as shown
in Figure . Initial
rates are shown in Table .
Enzymatic glycosylation
of 15HCM with UDP-glucose regeneration.
UDP-glucose was regenerated from sucrose conversion by GmSusy and UDP. 15HCM (A, B, 1 mM; C, 10 mM) was used. DMSO (A, B,
4%; C, 10%) was used as a co-solvent. UDP concentrations were 1 mM
(A), 2 mM (B), and 0.5 mM (C). Closed circles are 15HCM. Open circles
are 15HCM-β-d-glucoside. Open triangles are disaccharide
forms of 15HCM, a sum of P1 and P2 as shown
in Figure . Initial
rates are shown in Table .The overall reaction involved
rapid formation of 15HCM β-d-glucoside in a yield of
∼85% of the 15HCM present (Figure A,B). The 15HCM β-d-glucoside
was then gradually converted into the disaccharide
glucosides (Figure A,B). Product selectivity was tunable via the UDP concentration used,
where high and low concentrations led to the disaccharide glucosides
(≥90% selectivity; Figure A–B) and formation of 15HCM β-d-glucoside (≥85% selectivity; Figure C). To our knowledge, this is the first report
of selectivity in glycosyltransferase-catalyzed glycosylation modulated
via in situ supply of the sugar nucleotide donor.
As a general reaction concept, the approach seems to be broadly applicable
to glycosyltransferases, but its relevance is immediately evident
for glycosylation processes that are of an iterative nature. Adjustment
of the steady-state level of sugar nucleotide donor via the nucleotide
diphosphate concentration enables control over product formed from
single or multiple events of glycosylation. The type of control is
largely thermodynamic. Kinetic benefit may arise from lowered inhibition
by the released nucleotide diphosphate. The permissive character of
the sucrose synthase allows for different nucleotide-activated forms
of d-glucose to be prepared from sucrose.[36,40,41] Combination with a suitable sugar nucleotide
epimerase can expand the scope of glycosyl donors prepared in situ.[36,42] Other “reverse”
glycosyltransferase reactions previously applied for in situ release of sugar nucleotide donors[10,43] can be used
in a conceptually analogous manner. Difference should be noted between
the idea of in situ sugar nucleotide synthesis for
controlling the product selectivity in iterative glycosylation processes,
which is new, and use of the same for a mere regeneration of the sugar
nucleotide, which is well established for biocatalytic synthesis with
glycosyltransferases.[37−39]
Glycosylation of 4MU and 4NP: Complex Interplay
of Kinetics
and Thermodynamics of BcGT1-Catalyzed Reactions
To examine disaccharide modification of other aglycones, we used
4MU and 4NP, which are both broadly important xenobiotics (e.g., due
to widespread use in analytical reagents). Despite earlier evidence
of BcGT1 glycosylating these acceptors,[30] the reactions were not analyzed in detail. We
first analyzed the BcGT1 reaction with the β-d-glucosides of 4MU and 4NP. Results in Figure A,B reveal the glycosylation of both substrates
from UDP-glucose, with a specific activity of 0.35 nmol/(min mg) (4MU
β-d-glucoside) and 1.29 nmol/(min mg) (4NP β-d-glucoside) calculated from the data. Compared to the reaction
of 15HCM β-d-glucoside that was cleanly converted to
the disaccharide products (Figure C), the reactions of 4MU β-d-glucoside
and 4NP β-d-glucoside were more complex in that besides
the anticipated disaccharide products, free aglycone was also released.
Glycosylation of 4MU or 4NP from UDP-glucose proceeded to full conversion
of the aglycone, only to release free 4MU or 4NP later in the reaction
(Figure C,D). These
results suggested that the equilibrium reaction, aglycone + UDP-glucose
↔ β-d-glycopyranoside + UDP, was overlapped
with another reaction perturbing the equilibrium position.
Figure 6
Reactions of
4MU-β-d-glucoside, 4NP-β-d-glucoside,
and aglycones with BcGT1 and UDP-glucose.
Glucosides (open circles) and aglycones (closed circles) were 1 mM
in the presence of DMSO (4%, by volume). BcGT1 was
3 mg/mL. UDP-glucose was 2 mM. Open triangles are disaccharides. Initial
rates are shown in Table . (A) Reaction of 4MU-β-d-glucoside. (B) Reaction
of 4NP-β-d-glucoside. (C) Reaction of 4MU. (D) Reaction
of 4NP.
Reactions of
4MU-β-d-glucoside, 4NP-β-d-glucoside,
and aglycones with BcGT1 and UDP-glucose.
Glucosides (open circles) and aglycones (closed circles) were 1 mM
in the presence of DMSO (4%, by volume). BcGT1 was
3 mg/mL. UDP-glucose was 2 mM. Open triangles are disaccharides. Initial
rates are shown in Table . (A) Reaction of 4MU-β-d-glucoside. (B) Reaction
of 4NP-β-d-glucoside. (C) Reaction of 4MU. (D) Reaction
of 4NP.The rate of re-formation of 4MU
was dependent on the BcGT1 concentration (Supporting Figure S10). An apparent specific
activity of 0.081 nmol/(min mg) was determined
for the enzyme preparation used. To exclude the possibility that the BcGT1 as isolated contained the activity of a 4MU β-d-glucoside hydrolase, likely indicating a contamination, we
offered 4MU β-d-glucoside as the sole substrate, without
UDP-glucose or UDP added (Supporting Figure S11). The enzyme converted a limited amount of the substrate (∼0.25
mM) to 4MU, roughly corresponding to the molarity of the BcGT1 used (Supporting Figure S11). Since
this behavior was unusual for a hydrolase, we considered that nucleotide
diphosphate co-purified with the BcGT1 might promote
glycosyltransferase reaction in the reverse direction. Indeed, BcGT1 preparation stripped of nucleotide diphosphate by
treatment with phosphatase[44,45] no longer showed activity
(Supporting Figure S11). De-glycosylation
of 4MU β-d-glucoside to a nucleotide diphosphate acceptor,
suggested from these findings, was further demonstrated in BcGT1 reactions that involved 4MU β-d-glucoside
and UDP as the substrates and showed conversion into 4MU and UDP-glucose
(Figure A). The same
conversion was shown with UDP supplied in situ from
UDP-glucose and fructose via the reverse reaction of sucrose synthase
(Figure B). Interestingly,
no enzyme-catalyzed de-glycosylation was shown for the 15HCM β-d-glucoside in the presence of UDP, directly added to the reaction
or released in situ (Supporting Figure S12). Considering apparent equilibrium of the 15HCM
β-d-glucoside synthesis (Figure ), restriction on the reverse reaction must
be of a kinetic rather than thermodynamic nature.
Figure 7
De-glycosylation of 4MU-β-d-glucoside by BcGT1 and UDP. The enzyme BcGT1 (3 mg/mL)
catalyzes the transfer of β-glucosyl from 4MU-β-d-glucoside (1 mM, open circles) to 4MU (closed circles). Formation
of disaccharides (open triangles) was not observed. (A) Reaction with
UDP (2 mM) at pH 7.4. (B) Reaction with UDP regenerated from sucrose
synthesis by GmSusy with fructose and UDP-glucose. Initial rates are shown in Table .
De-glycosylation of 4MU-β-d-glucoside by BcGT1 and UDP. The enzyme BcGT1 (3 mg/mL)
catalyzes the transfer of β-glucosyl from 4MU-β-d-glucoside (1 mM, open circles) to 4MU (closed circles). Formation
of disaccharides (open triangles) was not observed. (A) Reaction with
UDP (2 mM) at pH 7.4. (B) Reaction with UDP regenerated from sucrose
synthesis by GmSusy with fructose and UDP-glucose. Initial rates are shown in Table .With reversible glucosyl transfer between 4MU and UDP shown, it
remained to explain that 4MU was slowly formed from a mixture in which
the enzymatic reaction of 4MU and UDP-glucose had come to apparent
equilibrium (Figure C). Considering that glycosyltransferases vary in degree to which
they exhibit hydrolase activity toward their donor substrates,[4,46] we examined the same for BcGT1 and show hydrolysis
of UDP-glucose by the enzyme (Supporting Figure S13). The specific activity was about 5% (∼10 nmol/(min
mg)) that of the glycosyl transfer from UDP-glucose to 4MU (∼212
nmol/(min mg), Table ).
Controlled Glycosylation to Disaccharide-Modified 4MU and 4NP
Being interested in synthetic access to disaccharide-modified 4MU
and 4NP, we were encouraged by the results of 15HCM glycosylation
(Figure ) and considered
glycosylation of the 4MU and 4NP mono-β-d-glucoside
under conditions in which in situ release of UDP-glucose
from sucrose and UDP controls the overall transformation. Using 2
mM UDP (as suggested from Figure B), our aim was to prevent the de-glycosylation of
the mono-β-d-glucoside substrate by way of a relatively
high steady-state concentration of UDP-glucose. Figure shows that 4MU-β-d-glucoside
(panel A) and 4NP-β-d-glucoside (panel B) both were
converted with high selectivity (≥90%) for glycosylation compared
to their degradation (de-glycosylation) into the corresponding aglycone.
It should be instructive to compare BcGT1 reactions
with UDP-glucose added directly, leading mainly to de-glycosylation
(Figure A,B), and BcGT1 reactions with UDP-glucose released in situ, giving almost exclusively glycosylation (Figure ).
Figure 8
Glycosylation of 4MU-β-d-glucoside
and 4NP-β-d-glucoside by BcGT1 with
enzymatic recycling
of UDP-glucose. 4MU-β-d-glucoside (A, open circles)
and 4NP-β-d-glucoside (B, open circles) concentrations
were 1 mM. DMSO (4%, by volume) was used as a co-solvent. BcGT1 concentration was 3 mg/mL. UDP-glucose was constantly
supplied from the reaction of GmSusy with sucrose
and UDP. Closed circles are 4MU (A) and 4NP (B). Open triangles are
disaccharide forms. Initial rates are shown in Table .
Glycosylation of 4MU-β-d-glucoside
and 4NP-β-d-glucoside by BcGT1 with
enzymatic recycling
of UDP-glucose. 4MU-β-d-glucoside (A, open circles)
and 4NP-β-d-glucoside (B, open circles) concentrations
were 1 mM. DMSO (4%, by volume) was used as a co-solvent. BcGT1 concentration was 3 mg/mL. UDP-glucose was constantly
supplied from the reaction of GmSusy with sucrose
and UDP. Closed circles are 4MU (A) and 4NP (B). Open triangles are
disaccharide forms. Initial rates are shown in Table .Time courses in Figure show steady formation of the disaccharide-modified products
in high selectivity, with yields of 24% (4MU-β-d-glucoside)
and 52% (4NP-β-d-glucoside) after 24 h. The yield can
still be improved by extending the reaction time. The important point
is the tight control of reaction direction achieved by in
situ release of UDP-glucose. This control is absolutely crucial
for the iterative glycosylation to become practical in providing synthetic
access to disaccharide-modified aglycones. As already mentioned in
discussing 15HCM glycosylation, the idea of directing iterative glycosylation
reactions by way of delivering the sugar nucleotide donor could be
broadly applicable to glycosyltransferases in synthesis.
Permissive
Nature of BcGT1 Interpreted Structurally
The atomic structure of BcGT1 is not known, but
a few tempered conclusions can be made based on the results of homology
modeling (Figure ),
using the crystal structure of calicheamicin glycosyltransferase[47] (CalG2, PDB code: 3RSC, sequence identity with BcGT1, 28.5%) as the template. Based on sequence similarity according
to the CAZy database (http://www.cazy.org/),[48]BcGT1 is classified
into glycosyltransferase family GT1. This is a large enzyme family
involving natural product glycosyltransferases and Supporting Figure S14 shows a structure-based sequence alignment
of BcGT1 with several of such glycosyltransferases.
The model suggests BcGT1 to adopt the GT-B fold[47,49,50] consisting of two β/α/β
Rossman fold-like domains (see Figure A,B). The C-terminal domain, which binds the sugar
nucleotide, is structurally well conserved and rigid. The N-terminal
domain for acceptor substrate binding is more variable in sequence
and structurally flexible. Dockings of UDP (Figure A) and UDP-glucose (Supporting Figure S15) indicate a well-defined stable binding of the uridine
moiety in the C-terminal domain. The pyrophosphate moiety is bound
more flexibly (Supporting Figure S15).
The UDP docking is consistent with the experimental binding of thymidine-5′-diphosphate
in CalG2. The glucosyl residue of UDP-glucose is positioned in the
interdomain cleft (Supporting Figure S15). Docking models of the disaccharide-modified 15HCM products bound
to the BcGT1-UDP complex are shown in Figure C (cellobiosyl) and 9D (gentiobiosyl).
The 15HCM β-d-glucoside part of the products is accommodated
in the N-terminal domain. The terminal glucosyl residue protrudes
into the interdomain cleft and its position in both products overlaps
well with that of the glucosyl residue of UDP-glucose (Supporting Figure S16A,B). The ternary BcGT1 complexes with UDP and disaccharide-modified product
are plausible regarding catalysis. The catalytic dyad of His14 and
Asp106 is positioned to provide protonic assistance, via intermediate
water molecules, to the reversible cleavage of the β1,4- and
β1,6-glycosidic bonds in the cellobiose- and gentiobiose-modified
15HCM (Figure C,D).
While the His-Asp dyad is widely conserved among family GT1 glycosyltransferase,[47,49,50] the intermediary waters are an
interesting feature, as previously noted for CalG2.[47] It is tempting to speculate that the relatively high hydrolase
activity of BcGT1 toward UDP-glucose may be connected
to these water molecules. Considering the flexibility of the bound
pyrophosphate group (Supporting Figure S15) mentioned above, the β-phosphate group of UDP is positioned
reasonably (∼5.6 Å; Supporting Figure S16C,D) for attack on the anomeric carbon to form the α-configured
UDP-glucose in a single displacement-like reaction.
Figure 9
Structural interpretation
of the iterative glycosylation of 15HCM-β-d-glucoside
by BcGT1. (A) Overlay of the structure
model of BcGT1 (UDP bound; protein and ligand shown
in yellow-orange) and the crystal structure of CalG2 from Micromonospora echinospora (thymidine-5′-diphosphate
and calicheamicin T0 bound, PDB code: 3RSC; protein and ligand shown in deep teal,
calicheamicin T0 in gray). (B) Structure model of BcGT1 with UDP and β-cellobiosyl 15HCM (shown in violet purple)
or UDP and β-gentiobiosyl 15HCM (shown in lemon) bound. The
crystal structure of CalG2 (PDB code: 3RSC; protein shown in deep teal) is superimposed
on the structure models of BcGT1. (C, D) Close-up
structures showing the BcGT1 active site with UDP
(C, D) and β-cellobiosyl 15HCM (C)- or β-gentiobiosyl
15HCM (D)-bound. The putative catalytic dyad of His14 and Asp106 can
facilitate protonation of the glycosidic oxygen via one of two water
molecules (red spheres). Water molecules were from the crystal structure
of CalG2 (PDB code: 3RSC).
Structural interpretation
of the iterative glycosylation of 15HCM-β-d-glucoside
by BcGT1. (A) Overlay of the structure
model of BcGT1 (UDP bound; protein and ligand shown
in yellow-orange) and the crystal structure of CalG2 from Micromonospora echinospora (thymidine-5′-diphosphate
and calicheamicin T0 bound, PDB code: 3RSC; protein and ligand shown in deep teal,
calicheamicin T0 in gray). (B) Structure model of BcGT1 with UDP and β-cellobiosyl 15HCM (shown in violet purple)
or UDP and β-gentiobiosyl 15HCM (shown in lemon) bound. The
crystal structure of CalG2 (PDB code: 3RSC; protein shown in deep teal) is superimposed
on the structure models of BcGT1. (C, D) Close-up
structures showing the BcGT1 active site with UDP
(C, D) and β-cellobiosyl 15HCM (C)- or β-gentiobiosyl
15HCM (D)-bound. The putative catalytic dyad of His14 and Asp106 can
facilitate protonation of the glycosidic oxygen via one of two water
molecules (red spheres). Water molecules were from the crystal structure
of CalG2 (PDB code: 3RSC).The docking results underpin the
remarkable permissiveness of BcGT1 in the reaction
with acceptor substrates. The enzyme
binding pocket allows for the 15HCM portion of the disaccharide-modified
products to be accommodated in two completely different orientations.
The subterminal β-glucoside is thus positioned for glycosylation
at O4 or O6 (Figure C,D). Supported by the literature on related natural product glycosyltransferases,[47,49,50] the structure modeling of BcGT1 suggests that a large and easily accessible binding
pocket is crucial for permissive reactivity with acceptors representing
a broad variety of chemical structures. It is also the basis for iterative
glycosylation, requiring reaction with a nonsugar acceptor in the
first step and with a sugar in the second. Like BcGT1, glycosyltransferases performing multiple or iterative glycosylation
reactions on acceptor substrates feature wide open and highly flexible
binding pockets. Important examples are calicheamicin glycosyltransferases
from Micromonospora echinospora,(47) the ginsenoside protopanaxadiol glycosyltransferase
Bs-YjiC from Bacillus subtilis,(49) and the macrolide glycosyltransferase OleD from Streptomyces antibioticus.(50) Glycosyltransferases can bind acceptor substrates in different orientations
for glycosylation.[51]In conclusion,
permissive glycosylation from UDP-glucose catalyzed
by BcGT1 is identified here for controlled β-glucosyl
disaccharide modification of xenobiotic aglycones. A convenient synthetic
route towards an important structural class of glycosylated products
of detoxification metabolism is thus presented. The enzymatic conversion
is performed in one pot without the requirement for isolation of intermediary
products. It gives the desired disaccharide-modified product in high
yield based on the aglycone provided. Two elements of the biotransformation
are crucial for synthetic efficiency and practical utility: (1) BcGT1 combines high β-selectivity in the glycosylation
performed with broad specificity for the acceptor substrate used.
Enzyme regioselectivity in the second step (β-glucoside glycosylation)
of the iterative glycosylation sequence is relaxed, with β1,4
and β1,6-glycosylation occurring at a similar (2:1) frequency.
However, the installment of both cellobiose and gentiobiose residues
is of considerable synthetic interest, even in mixture, for the biological
relevance that exactly these modifications have in the detoxification
metabolism of xenobiotics.[18−21] (2) Reaction engineering, to couple the BcGT1 reaction with the reaction of sucrose synthase, is used to achieve
two effects. First, UDP-glucose is supplied in situ at a suitable steady-state concentration that is constant during
the whole conversion. Second, the UDP accumulating in the reaction
is kept low. With sucrose used in excess, the mass action ratio from
[UDP-glucose]/[UDP] is maintained to drive the iterative glycosylation
from UDP-glucose to complete. Programmable synthesis of the disaccharide-modified
product is thus enabled. The direct addition of UDP-glucose in excess
cannot achieve the same: complex mixtures of monosaccharide and disaccharide-modified
aglycones are obtained in a composition variable over time. The evidence
from the current study can be broadly relevant in extending the synthetic
scope of sugar nucleotide-dependent glycosyltransferases for controlled
disaccharide modification. The strategy can be used flexibly (i.e.,
is not limited to UDP-glucose) by integrating sugar nucleotide-modifying
enzymes (e.g., epimerases[36,42]) into the enzymatic
cascade. Finally, the results presented inform glycosylation cascade
reactions that involve glycosyltransferases operating in the reverse
direction.[10,43] The importance of controlling
the mass action ratio of sugar nucleotide/nucleotide during the conversion
is emphasized.
Authors: Ruth Campe; Eva Hollenbach; Lara Kämmerer; Janneke Hendriks; Hans Wolfgang Höffken; Helmut Kraus; Jens Lerchl; Thomas Mietzner; Stefan Tresch; Matthias Witschel; Johannes Hutzler Journal: Pestic Biochem Physiol Date: 2018-04-20 Impact factor: 3.963