Literature DB >> 34812397

Improving Uncertainty Estimation With Semi-Supervised Deep Learning for COVID-19 Detection Using Chest X-Ray Images.

Saul Calderon-Ramirez1,2, Shengxiang Yang1, Armaghan Moemeni3, Simon Colreavy-Donnelly1, David A Elizondo1, Luis Oala4, Jorge Rodriguez-Capitan5,6, Manuel Jimenez-Navarro5,6, Ezequiel Lopez-Rubio7,6, Miguel A Molina-Cabello7,6.   

Abstract

In this work we implement a COVID-19 infection detection system based on chest X-ray images with uncertainty estimation. Uncertainty estimation is vital for safe usage of computer aided diagnosis tools in medical applications. Model estimations with high uncertainty should be carefully analyzed by a trained radiologist. We aim to improve uncertainty estimations using unlabelled data through the MixMatch semi-supervised framework. We test popular uncertainty estimation approaches, comprising Softmax scores, Monte-Carlo dropout and deterministic uncertainty quantification. To compare the reliability of the uncertainty estimates, we propose the usage of the Jensen-Shannon distance between the uncertainty distributions of correct and incorrect estimations. This metric is statistically relevant, unlike most previously used metrics, which often ignore the distribution of the uncertainty estimations. Our test results show a significant improvement in uncertainty estimates when using unlabelled data. The best results are obtained with the use of the Monte Carlo dropout method. This work is licensed under a Creative Commons Attribution 4.0 License. For more information, see https://creativecommons.org/licenses/by/4.0/.

Entities:  

Keywords:  Coronavirus; Covid-19; MixMatch; Uncertainty estimation; chest x-ray; computer aided diagnosis; semi-supervised deep learning

Year:  2021        PMID: 34812397      PMCID: PMC8545186          DOI: 10.1109/ACCESS.2021.3085418

Source DB:  PubMed          Journal:  IEEE Access        ISSN: 2169-3536            Impact factor:   3.367


  20 in total

1.  Exploiting Epistemic Uncertainty of Anatomy Segmentation for Anomaly Detection in Retinal OCT.

Authors:  Philipp Seebock; Jose Ignacio Orlando; Thomas Schlegl; Sebastian M Waldstein; Hrvoje Bogunovic; Sophie Klimscha; Georg Langs; Ursula Schmidt-Erfurth
Journal:  IEEE Trans Med Imaging       Date:  2019-05-31       Impact factor: 10.048

2.  Handling of uncertainty in medical data using machine learning and probability theory techniques: a review of 30 years (1991-2020).

Authors:  Roohallah Alizadehsani; Mohamad Roshanzamir; Sadiq Hussain; Abbas Khosravi; Afsaneh Koohestani; Mohammad Hossein Zangooei; Moloud Abdar; Adham Beykikhoshk; Afshin Shoeibi; Assef Zare; Maryam Panahiazar; Saeid Nahavandi; Dipti Srinivasan; Amir F Atiya; U Rajendra Acharya
Journal:  Ann Oper Res       Date:  2021-03-21       Impact factor: 4.820

3.  Truncated inception net: COVID-19 outbreak screening using chest X-rays.

Authors:  Dipayan Das; K C Santosh; Umapada Pal
Journal:  Phys Eng Sci Med       Date:  2020-06-25

Review 4.  COVID-19: Epidemiology, Evolution, and Cross-Disciplinary Perspectives.

Authors:  Jiumeng Sun; Wan-Ting He; Lifang Wang; Alexander Lai; Xiang Ji; Xiaofeng Zhai; Gairu Li; Marc A Suchard; Jin Tian; Jiyong Zhou; Michael Veit; Shuo Su
Journal:  Trends Mol Med       Date:  2020-03-21       Impact factor: 11.951

5.  Improved Molecular Diagnosis of COVID-19 by the Novel, Highly Sensitive and Specific COVID-19-RdRp/Hel Real-Time Reverse Transcription-PCR Assay Validated In Vitro and with Clinical Specimens.

Authors:  Jasper Fuk-Woo Chan; Cyril Chik-Yan Yip; Kelvin Kai-Wang To; Tommy Hing-Cheung Tang; Sally Cheuk-Ying Wong; Kit-Hang Leung; Agnes Yim-Fong Fung; Anthony Chin-Ki Ng; Zijiao Zou; Hoi-Wah Tsoi; Garnet Kwan-Yue Choi; Anthony Raymond Tam; Vincent Chi-Chung Cheng; Kwok-Hung Chan; Owen Tak-Yin Tsang; Kwok-Yung Yuen
Journal:  J Clin Microbiol       Date:  2020-04-23       Impact factor: 5.948

6.  Explainable Deep Learning for Pulmonary Disease and Coronavirus COVID-19 Detection from X-rays.

Authors:  Luca Brunese; Francesco Mercaldo; Alfonso Reginelli; Antonella Santone
Journal:  Comput Methods Programs Biomed       Date:  2020-06-20       Impact factor: 5.428

7.  Objective evaluation of deep uncertainty predictions for COVID-19 detection.

Authors:  Hamzeh Asgharnezhad; Afshar Shamsi; Roohallah Alizadehsani; Abbas Khosravi; Saeid Nahavandi; Zahra Alizadeh Sani; Dipti Srinivasan; Sheikh Mohammed Shariful Islam
Journal:  Sci Rep       Date:  2022-01-17       Impact factor: 4.379

8.  Correcting data imbalance for semi-supervised COVID-19 detection using X-ray chest images.

Authors:  Saul Calderon-Ramirez; Shengxiang Yang; Armaghan Moemeni; David Elizondo; Simon Colreavy-Donnelly; Luis Fernando Chavarría-Estrada; Miguel A Molina-Cabello
Journal:  Appl Soft Comput       Date:  2021-07-13       Impact factor: 6.725

9.  COVID-Net: a tailored deep convolutional neural network design for detection of COVID-19 cases from chest X-ray images.

Authors:  Linda Wang; Zhong Qiu Lin; Alexander Wong
Journal:  Sci Rep       Date:  2020-11-11       Impact factor: 4.379

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  7 in total

1.  Objective evaluation of deep uncertainty predictions for COVID-19 detection.

Authors:  Hamzeh Asgharnezhad; Afshar Shamsi; Roohallah Alizadehsani; Abbas Khosravi; Saeid Nahavandi; Zahra Alizadeh Sani; Dipti Srinivasan; Sheikh Mohammed Shariful Islam
Journal:  Sci Rep       Date:  2022-01-17       Impact factor: 4.379

2.  CoWarriorNet: A Novel Deep-Learning Framework for CoVID-19 Detection from Chest X-Ray Images.

Authors:  Indrani Roy; Rinita Shai; Arijit Ghosh; Anirban Bej; Soumen Kumar Pati
Journal:  New Gener Comput       Date:  2021-12-03       Impact factor: 1.180

3.  Uncertainty-aware convolutional neural network for COVID-19 X-ray images classification.

Authors:  Mahesh Gour; Sweta Jain
Journal:  Comput Biol Med       Date:  2021-11-23       Impact factor: 4.589

4.  COVID-19 Detection in CT/X-ray Imagery Using Vision Transformers.

Authors:  Mohamad Mahmoud Al Rahhal; Yakoub Bazi; Rami M Jomaa; Ahmad AlShibli; Naif Alajlan; Mohamed Lamine Mekhalfi; Farid Melgani
Journal:  J Pers Med       Date:  2022-02-18

Review 5.  Uncertainty Estimation in Medical Image Classification: Systematic Review.

Authors:  Alexander Kurz; Katja Hauser; Hendrik Alexander Mehrtens; Eva Krieghoff-Henning; Achim Hekler; Jakob Nikolas Kather; Stefan Fröhling; Christof von Kalle; Titus Josef Brinker
Journal:  JMIR Med Inform       Date:  2022-08-02

6.  Image enhancement techniques on deep learning approaches for automated diagnosis of COVID-19 features using CXR images.

Authors:  Ajay Sharma; Pramod Kumar Mishra
Journal:  Multimed Tools Appl       Date:  2022-08-01       Impact factor: 2.577

7.  Machine Learning for Health: Algorithm Auditing & Quality Control.

Authors:  Luis Oala; Andrew G Murchison; Pradeep Balachandran; Shruti Choudhary; Jana Fehr; Alixandro Werneck Leite; Peter G Goldschmidt; Christian Johner; Elora D M Schörverth; Rose Nakasi; Martin Meyer; Federico Cabitza; Pat Baird; Carolin Prabhu; Eva Weicken; Xiaoxuan Liu; Markus Wenzel; Steffen Vogler; Darlington Akogo; Shada Alsalamah; Emre Kazim; Adriano Koshiyama; Sven Piechottka; Sheena Macpherson; Ian Shadforth; Regina Geierhofer; Christian Matek; Joachim Krois; Bruno Sanguinetti; Matthew Arentz; Pavol Bielik; Saul Calderon-Ramirez; Auss Abbood; Nicolas Langer; Stefan Haufe; Ferath Kherif; Sameer Pujari; Wojciech Samek; Thomas Wiegand
Journal:  J Med Syst       Date:  2021-11-02       Impact factor: 4.920

  7 in total

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