| Literature DB >> 34802242 |
Gasper Maeda1,2, Pieter J Gilissen3, Anastasia Rudenko4, Jelle van der Wal4, Catarina Bourgard4, Arvind Kumar Gupta5, Per Sunnerhagen4, Joan J E Munissi1, Stephen S Nyandoro1, Máté Erdélyi2.
Abstract
Five new cyclohexene derivatives, dipandensin A and B (1 and 2) and pandensenols A-C (3-5), and 16 known secondary metabolites (6-21) were isolated from the methanol-soluble extracts of the stem and root barks of Uvaria pandensis. The structures were characterized by NMR spectroscopic and mass spectrometric analyses, and that of 6-methoxyzeylenol (6) was further confirmed by single-crystal X-ray crystallography, which also established its absolute configuration. The isolated metabolites were evaluated for antibacterial activity against the Gram-positive bacteria Bacillus subtilis and Staphylococcus epidermidis and the Gram-negative bacteria Enterococcus raffinosus, Escherichia coli, Paraburkholderia caledonica, Pectobacterium carotovorum, and Pseudomonas putida, as well as for cytotoxicity against the MCF-7 human breast cancer cell line. A mixture of uvaretin (20) and isouvaretin (21) exhibited significant antibacterial activity against B. subtilis (EC50 8.7 μM) and S. epidermidis (IC50 7.9 μM). (8'α,9'β-Dihydroxy)-3-farnesylindole (12) showed strong inhibitory activity (EC50 9.8 μM) against B. subtilis, comparable to the clinical reference ampicillin (EC50 17.9 μM). None of the compounds showed relevant cytotoxicity against the MCF-7 human breast cancer cell line.Entities:
Mesh:
Substances:
Year: 2021 PMID: 34802242 PMCID: PMC8713284 DOI: 10.1021/acs.jnatprod.1c00811
Source DB: PubMed Journal: J Nat Prod ISSN: 0163-3864 Impact factor: 4.050
NMR Spectroscopic Data (500 MHz, CD3CN) for Dipandensin A (1)
| position | δC, type | δH | ( | HMBC |
|---|---|---|---|---|
| 1 | 135.2, C | |||
| 2 | 129.5, CH | 6.02 | dd (2.9, 2.4) | C-1, C-3, C-4, C-6, C-7, C-3″ |
| 3 | 40.2, CH | 3.04 | ddd (9.0, 2.9, 2.4) | C-1, C-2, C-4, C-5, C-2″, C-3″, C-4″, C-6″ |
| 4 | 31.1, CH | 3.09 | dd (9.0, 6.5) | C-2, C-3, C-5, C-6, C-1″, C-3″, C-5″, C-6″ |
| 5 | 81.4, CH | 3.48 | dd (9.1, 6.5) | C-1, C-3, C-4, C-6, C-1″, OCH3-5 |
| CH3O-5 | 57.9, CH3 | 3.37 | s | C-5 |
| 6 | 70.5, CH | 5.41 | ddd (9.1, 2.4, 2.4) | C-1, C-2, C-4, C-5, COO-6 |
| OAc-6 | 171.3, OC=O | |||
| 21.1, CH3 | 1.99 | COO-6 | ||
| 7 | 65.3, CH2 | 4.77 | d (12.4) | C-1, C-2, C-6, C-7′ |
| 4.62 | d (12.4) | C-1, C-2, C-6, C-7′ | ||
| 1′ | 131.0, C | |||
| 2′/6′ | 130.3, CH | 7.97 | dd (8.3, 1.5) | C-1′, C-3′/5′, C-4′, C-7′ |
| 3′/5′ | 129.5, CH | 7.50 | dd (8.3, 7.5) | C-1′, C-2′/6′, C-4′ |
| 4′ | 134.1, CH | 7.62 | dd (7.5, 1.5) | C-2′/6′, C-3′/5′ |
| 7′ | 166.7, OC=O | |||
| 1″ | 132.6, CH | 6.28 | dd (8.2, 6.8) | C-4, C-2″, C-3″, C-5″, C-6″ |
| 2″ | 133.0, CH | 5.75 | d (8.2) | C-3″, C-4″, C-6″, C-7″ |
| 3″ | 47.6, C | |||
| 4″ | 76.5, CO | 5.09 | d (2.9) | C-2″, C-3″, C-5″, C-6″, C-7″, COO-4″ |
| OAc-4″ | 170.4, OC=O | |||
| 21.1, CH3 | 1.96 | COO-4″ | ||
| 5″ | 87.1, CO | 3.10 | dd (2.9, 2.9) | C-1″, C-3″, C-4″, OCH3-5″, C-6″ |
| CH3O-5″ | 57.2, CH3 | 3.32 | s | C-5″ |
| 6″ | 34.1, CH | 3.15 | dd (6.8, 2.9) | C-3, C-4, C-5, C-1″, C-2″, C-4″, C-5″, |
| 7″ | 62.3, CH2 | 4.48 | ABq (12.0) | C-3, C-2″, C-3″, C-4″, C-7‴ |
| 1‴ | 131.2, C | |||
| 2‴/6‴ | 130.4, CH | 8.04 | dd (8.4, 1.5) | C-1‴, C-3‴/5‴, C-4‴, C-7‴ |
| 3‴/5‴ | 129.5, CH | 7.50 | dd (8.4, 7.7) | C-1‴, C-2‴/6‴, C-4″ |
| 4‴ | 134.2, CH | 7.62 | tt (7.7, 1.5) | C-2‴/6‴, C-3‴/5‴ |
| 7‴ | 166.8, OC=O |
Figure 1Retro-Diels–Alder analysis and key NOEs (red arrows) of compound 1.
NMR Spectroscopic Data (500 MHz, CD3CN) for Dipandensin B (2)
| position | δC, type | δH | ( | HMBC |
|---|---|---|---|---|
| 1 | 60.8, C | |||
| 2 | 61.7, CH | 3.43 | br, s | C-1, C-3, C-4, C-6, C-7, C-3″ |
| 3 | 38.6, CH | 2.88 | d (9.1) | C-1, C-2, C-4, C-5, C-2″, C-3″, C-6″, C-7″ |
| 4 | 32.8, CH | 2.91 | dd (9.1, 5.7) | C-2, C-3, C-6, C-1″, C-3″, C-5″, C-6″ |
| 5 | 77.8, CH | 3.62 | dd (9.9, 5.7) | C-1, C-3, C-4, OCH3-5, C-6, C-6″ |
| CH3O-5 | 58.1, CH3 | 3.28 | S | C-5 |
| 6 | 70.3, CH | 5.29 | d (9.9) | C-1, C-2, C-4, C-5, C-7, COO-6 |
| OAc-6 | 171.1, OC=O | |||
| 21.0, CH3 | 2.07 | s | COO-6 | |
| 7 | 63.8, CH2 | 4.42 | d (11.7) | C-1, C-2, C-6, C-7 |
| 4.01 | d (11.7) | C-1, C-2, C-6, C-7 | ||
| 1′ | 130.9, C | |||
| 2′/6′ | 130.5, CH | 8.05 | m | C-1′, C-3′/5′, C- 4′, C-7′ |
| 3′/5′ | 129.7, CH | 7.53 | m | C-1′, C-2′/6′, C-4′ |
| 4′ | 134.4, CH | 7.65 | m | C-2′/6′, C-3′/5′ |
| 7′ | 166.8, C=O | |||
| 1″ | 133.3, CH | 6.30 | dd (8.1, 7.5) | C-4, C-2″, C-3″, C-5″, C-6″ |
| 2″ | 132.2, CH | 5.85 | d (8.1) | C-3″, C-4″, C-6″, C-7″ |
| 3″ | 47.1, C | |||
| 4″ | 75.7, CH | 5.07 | d (2.9) | C-5, C-2″, C-3″, C-5″, C-6″, COO-4″ |
| OAc-4″ | 170.4, OC=O | |||
| 21.0, CH3 | 1.96 | s | COO-4″ | |
| 5″ | 87.0, CH | 3.02 | dd (3.0, 2.9) | C-1″, C-3″, C-4″, OCH3-5″, C-6″ |
| CH3O-5″ | 57.0, CH3 | 3.27 | s | C-5″ |
| 6″ | 33.7, CH | 3.09 | dd (7.5, 3.0) | C-3, C-4, C-5, C-1″, C-2″, C-4″, C-5″ |
| 7″ | 61.6, CH2 | 4.64 | d (12.2) | C-3, C-2″, C-3″, C-4″, C-7″ |
| 4.52 | d (12.2) | C-3, C-2″, C-3″, C-4″, C-7″ | ||
| 1‴ | 130.7, C | |||
| 2‴/6‴ | 130.4, CH | 8.04 | m | C-1‴, C-3‴/5‴, C-4‴, C-7‴ |
| 3‴/5‴ | 129.5, CH | 7.53 | m | C-1‴, C-2‴/6‴, C-4‴ |
| 4‴ | 134.2, CH | 7.65 | m | C-2‴/6‴, C-3‴/5‴ |
| 7‴ | 166.5, C=O |
Figure 2Key NOEs for compound 2, indicated as red arrows.
NMR Spectroscopic Data (500/MHz, CD3OD) for Pandensenol A (3)
| position | δC, type | δH | ( | HMBC |
|---|---|---|---|---|
| 1 | 132.8, CH | 5.72 | dd (10.2, 1.3) | C-2, C-3, C-5, C-6 |
| 2 | 128.2, CH | 5.71 | dd (10.2, 4.1) | C-1, C-3, C-4, C-6 |
| 3 | 71.2, CH | 4.02 | d (4.1) | C-1, C-2, C-4, C-5, C-1′ |
| 4 | 76.4, C | |||
| 5 | 74.3, CH | 3.65 | d (7.7) | C-1, C-3, C-4, C-6, C-1′ |
| 6 | 71.7, CH | 4.18 | dd (7.7, 1.3) | C-1, C-2, C-4, C-5 |
| 1′ | 66.2, CH2 | 3.82 | ABq (11.5) | C-3, C-4, C-5 |
| 2′ | 169.4, C=O | |||
| 1″ | 134.2, C | |||
| 2″/6″ | 130.5, CH | 8.02 | dd (7.8, 2.1) | C-1″, C-3″/5″, C-4″ |
| 3″/5″ | 129.6, CH | 7.48 | dd (7.8, 7.7) | C-1″, C-2″/6″, C-4″ |
| 4″ | 132.8, CH | 7.60 | tt (7.7, 2.1) | C-2″/6″, C-3″/5″ |
Figure 3Key NOEs for compound 3, shown as red arrows.
NMR Spectroscopic Data (600 MHz, CD3CN) for Pandensenol B (4)
| position | δC, type | δH | ( | HMBC |
|---|---|---|---|---|
| 1 | 135.8, CH | 5.90 | dd (10.0, 2.1) | C-2, C-3, C-5, C-6 |
| 2 | 123.3, CH | 5.76 | ddd (10.0, 4.4, 2.2) | C-1, C-3, C-4, C-6 |
| 3 | 71.5, CH | 5.41 | d (4.4) | C-1, C-2, C-4, C-5, C-1′, C-7″ |
| 4 | 75.3, C | |||
| 5 | 74.2, CH | 3.76 | dd (7.6, 5.7) | C-1, C-3, C-4, C-6, C-1′ |
| 6 | 70.7, CH | 4.18 | dddd (7.6, 6.4, 2.2, 2.1) | C-1, C-2, C-4, C-5 |
| 1′ | 67.2, CH2 | 4.31 | ABq (11.7) | C-3, C-4, C-5, C-1‴ |
| 1″ | 130.8, C | |||
| 2″/6″ | 130.3, CH | 8.00 | dd (8.4, 1.4) | C-1″, C-3″/5″, C-4″ |
| 3″/5″ | 129.6, CH | 7.50 | dd (8.4, 7.6) | C-1″, C-2″/6″, C-4″ |
| 4″ | 134.3, CH | 7.63 | tt (7.6, 1.4) | C-2″/6″, C-3″/5″ |
| 7″ | 165.9, OC=O | |||
| OAc-1′ | 171.5, OC=O | |||
| 20.8, CH3 | 1.87 | s | COO-1′ | |
| OH-4 | 3.42 | s | C-3, C-4, C-5, C-1′ | |
| OH-5 | 3.34 | d (5.7) | C-4, C-5, C-6 | |
| OH-6 | 3.28 | d (6.4) | C-1, C-5, C-6 |
Figure 4Key NOEs of compounds 4 and 6, indicated as red arrows.
Figure 5Solid-state structure of 6-methoxyzeylenol (6) shown as thermal ellipsoids with 50% probability levels.
NMR Spectroscopic Data (500 MHz, CDCl3) for Pandensenol C (5)
| position | δC, type | δH | ( | HMBC |
|---|---|---|---|---|
| 1 | 130.5, C | |||
| 2 | 125.9, CH | 5.84 | m | C-1, C-3, C-4, C-6, C-1′ |
| 3 | 26.4, CH2 | 2.20 | m | C-1, C-2, C-4, C-5 |
| 4 | 26.8, CH2 | 1.90 | m | C-2, C-3, C-5, C-6 |
| 2.18 | m | |||
| 5 | 23.6, CH2 | 1.98 | ddd (12.5, 5.3, 2.3) | C-1, C-3, C-4, C-6, C-2′ |
| 1.32 | ddd (13.9, 12.5, 5.3) | C-1, C-3, C-4, C-6, C-2′ | ||
| 6 | 45.0, CH | 1.58 | dddd (13.9, 11.5, 4.9, 2.5) | C-1, C-4, C-5, C-2′, C-3′, 4′ |
| 1′ | 68.9, CH2 | 4.72 | m | C-1, C-2, C-6, C-7″ |
| 2′ | 72.7, C–O | |||
| 3′ | 27.1, CH3 | 1.20 | s | C-2′, C-4′ |
| 4′ | 27.6, CH3 | 1.21 | s | C-2′, C-3′ |
| 1″ | 133.1, C | |||
| 2″/6″ | 129.7, CH | 8.05 | dd (8.2, 1.4) | C-3″/5″, C-4″, C-7″ |
| 3″/5″ | 128.5, CH | 7.44 | dd (8.2, 7.4) | C-2″/6″, C-4″, C-1″ |
| 4″ | 133.0, CH | 7.56 | tt (7.4, 1.4) | C-2″/6″, C-3″/5″ |
| 7″ | 166.6, C=O |