Literature DB >> 34798775

Perspectives on SARS-CoV-2 Main Protease Inhibitors.

Kaifu Gao1, Rui Wang1, Jiahui Chen1, Jetze J Tepe2, Faqing Huang3, Guo-Wei Wei1,4,5.   

Abstract

The main protease (Mpro) plays a crucial role in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) replication and is highly conserved, rendering it one of the most attractive therapeutic targets for SARS-CoV-2 inhibition. Currently, although two drug candidates targeting SARS-CoV-2 Mpro designed by Pfizer are under clinical trials, no SARS-CoV-2 medication is approved due to the long period of drug development. Here, we collect a comprehensive list of 817 available SARS-CoV-2 and SARS-CoV Mpro inhibitors from the literature or databases and analyze their molecular mechanisms of action. The structure-activity relationships (SARs) among each series of inhibitors are discussed. Additionally, we broadly examine available antiviral activity, ADMET (absorption, distribution, metabolism, excretion, and toxicity), and animal tests of these inhibitors. We comment on their druggability or drawbacks that prevent them from becoming drugs. This Perspective sheds light on the future development of Mpro inhibitors for SARS-CoV-2 and future coronavirus diseases.

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Year:  2021        PMID: 34798775      PMCID: PMC9357291          DOI: 10.1021/acs.jmedchem.1c00409

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   8.039


  142 in total

1.  Molecular mechanism of inhibition of the human protein complex Hsp90-Cdc37, a kinome chaperone-cochaperone, by triterpene celastrol.

Authors:  Sridhar Sreeramulu; Santosh Lakshmi Gande; Michael Göbel; Harald Schwalbe
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

2.  Catalytic Cleavage of Disulfide Bonds in Small Molecules and Linkers of Antibody-Drug Conjugates.

Authors:  Donglu Zhang; Aimee Fourie-O'Donohue; Peter S Dragovich; Thomas H Pillow; Jack D Sadowsky; Katherine R Kozak; Robert T Cass; Liling Liu; Yuzhong Deng; Yichin Liu; Cornelis E C A Hop; S Cyrus Khojasteh
Journal:  Drug Metab Dispos       Date:  2019-05-13       Impact factor: 3.922

3.  Biflavonoids from Torreya nucifera displaying SARS-CoV 3CL(pro) inhibition.

Authors:  Young Bae Ryu; Hyung Jae Jeong; Jang Hoon Kim; Young Min Kim; Ji-Young Park; Doman Kim; Thi Thanh Hanh Nguyen; Su-Jin Park; Jong Sun Chang; Ki Hun Park; Mun-Chual Rho; Woo Song Lee
Journal:  Bioorg Med Chem       Date:  2010-09-19       Impact factor: 3.641

4.  Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding.

Authors:  Roujian Lu; Xiang Zhao; Juan Li; Peihua Niu; Bo Yang; Honglong Wu; Wenling Wang; Hao Song; Baoying Huang; Na Zhu; Yuhai Bi; Xuejun Ma; Faxian Zhan; Liang Wang; Tao Hu; Hong Zhou; Zhenhong Hu; Weimin Zhou; Li Zhao; Jing Chen; Yao Meng; Ji Wang; Yang Lin; Jianying Yuan; Zhihao Xie; Jinmin Ma; William J Liu; Dayan Wang; Wenbo Xu; Edward C Holmes; George F Gao; Guizhen Wu; Weijun Chen; Weifeng Shi; Wenjie Tan
Journal:  Lancet       Date:  2020-01-30       Impact factor: 79.321

5.  Structure-based design of antiviral drug candidates targeting the SARS-CoV-2 main protease.

Authors:  Wenhao Dai; Bing Zhang; Xia-Ming Jiang; Haixia Su; Jian Li; Yao Zhao; Xiong Xie; Zhenming Jin; Jingjing Peng; Fengjiang Liu; Chunpu Li; You Li; Fang Bai; Haofeng Wang; Xi Cheng; Xiaobo Cen; Shulei Hu; Xiuna Yang; Jiang Wang; Xiang Liu; Gengfu Xiao; Hualiang Jiang; Zihe Rao; Lei-Ke Zhang; Yechun Xu; Haitao Yang; Hong Liu
Journal:  Science       Date:  2020-04-22       Impact factor: 47.728

6.  Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation.

Authors:  Daniel Wrapp; Nianshuang Wang; Kizzmekia S Corbett; Jory A Goldsmith; Ching-Lin Hsieh; Olubukola Abiona; Barney S Graham; Jason S McLellan
Journal:  Science       Date:  2020-02-19       Impact factor: 47.728

7.  Virtual screening identification of novel severe acute respiratory syndrome 3C-like protease inhibitors and in vitro confirmation.

Authors:  Thi Thanh Hanh Nguyen; Hwa-Ja Ryu; Se-Hoon Lee; Soonwook Hwang; Vincent Breton; Joon Haeng Rhee; Doman Kim
Journal:  Bioorg Med Chem Lett       Date:  2011-03-16       Impact factor: 2.823

8.  Both Boceprevir and GC376 efficaciously inhibit SARS-CoV-2 by targeting its main protease.

Authors:  Lifeng Fu; Fei Ye; Yong Feng; Feng Yu; Qisheng Wang; Yan Wu; Cheng Zhao; Huan Sun; Baoying Huang; Peihua Niu; Hao Song; Yi Shi; Xuebing Li; Wenjie Tan; Jianxun Qi; George Fu Gao
Journal:  Nat Commun       Date:  2020-09-04       Impact factor: 17.694

9.  Unveiling the molecular mechanism of SARS-CoV-2 main protease inhibition from 137 crystal structures using algebraic topology and deep learning.

Authors:  Duc Duy Nguyen; Kaifu Gao; Jiahui Chen; Rui Wang; Guo-Wei Wei
Journal:  Chem Sci       Date:  2020-09-30       Impact factor: 9.825

10.  Identification of novel small-molecule inhibitors of severe acute respiratory syndrome-associated coronavirus by chemical genetics.

Authors:  Richard Y Kao; Wayne H W Tsui; Terri S W Lee; Julian A Tanner; Rory M Watt; Jian-Dong Huang; Lihong Hu; Guanhua Chen; Zhiwei Chen; Linqi Zhang; Tian He; Kwok-Hung Chan; Herman Tse; Amanda P C To; Louisa W Y Ng; Bonnie C W Wong; Hoi-Wah Tsoi; Dan Yang; David D Ho; Kwok-Yung Yuen
Journal:  Chem Biol       Date:  2004-09
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  12 in total

Review 1.  Methodology-Centered Review of Molecular Modeling, Simulation, and Prediction of SARS-CoV-2.

Authors:  Kaifu Gao; Rui Wang; Jiahui Chen; Limei Cheng; Jaclyn Frishcosy; Yuta Huzumi; Yuchi Qiu; Tom Schluckbier; Xiaoqi Wei; Guo-Wei Wei
Journal:  Chem Rev       Date:  2022-05-20       Impact factor: 72.087

2.  Small-Molecule Thioesters as SARS-CoV-2 Main Protease Inhibitors: Enzyme Inhibition, Structure-Activity Relationships, Antiviral Activity, and X-ray Structure Determination.

Authors:  Thanigaimalai Pillaiyar; Philipp Flury; Nadine Krüger; Haixia Su; Laura Schäkel; Elany Barbosa Da Silva; Olga Eppler; Thales Kronenberger; Tianqing Nie; Stephanie Luedtke; Cheila Rocha; Katharina Sylvester; Marvin R I Petry; James H McKerrow; Antti Poso; Stefan Pöhlmann; Michael Gütschow; Anthony J O'Donoghue; Yechun Xu; Christa E Müller; Stefan A Laufer
Journal:  J Med Chem       Date:  2022-06-16       Impact factor: 8.039

3.  Discovery of 2-(furan-2-ylmethylene)hydrazine-1-carbothioamide derivatives as novel inhibitors of SARS-CoV-2 main protease.

Authors:  Xiaodong Dou; Qi Sun; Guofeng Xu; Yameng Liu; Caifang Zhang; Bingding Wang; Yangbin Lu; Zheng Guo; Lingyu Su; Tongyu Huo; Xinyi Zhao; Chen Wang; Zhongtian Yu; Song Song; Liangren Zhang; Zhenming Liu; Luhua Lai; Ning Jiao
Journal:  Eur J Med Chem       Date:  2022-06-03       Impact factor: 7.088

4.  Discovery of novel SARS-CoV-2 inhibitors targeting the main protease Mpro by virtual screenings and hit optimization.

Authors:  Beatrice Mercorelli; Jenny Desantis; Marta Celegato; Alessandro Bazzacco; Lydia Siragusa; Paolo Benedetti; Michela Eleuteri; Federico Croci; Gabriele Cruciani; Laura Goracci; Arianna Loregian
Journal:  Antiviral Res       Date:  2022-06-07       Impact factor: 10.103

5.  Penicillin Derivatives Inhibit the SARS-CoV-2 Main Protease by Reaction with Its Nucleophilic Cysteine.

Authors:  Tika R Malla; Lennart Brewitz; Dorian-Gabriel Muntean; Hiba Aslam; C David Owen; Eidarus Salah; Anthony Tumber; Petra Lukacik; Claire Strain-Damerell; Halina Mikolajek; Martin A Walsh; Christopher J Schofield
Journal:  J Med Chem       Date:  2022-05-12       Impact factor: 8.039

6.  A highly sensitive cell-based luciferase assay for high-throughput automated screening of SARS-CoV-2 nsp5/3CLpro inhibitors.

Authors:  K Y Chen; T Krischuns; L Ortega Varga; E Harigua-Souiai; S Paisant; A Zettor; J Chiaravalli; D Courtney; A O'Brien; S C Baker; C Isel; F Agou; Y Jacob; A Blondel; N Naffakh
Journal:  bioRxiv       Date:  2021-12-21

Review 7.  A Review of the Current Landscape of SARS-CoV-2 Main Protease Inhibitors: Have We Hit the Bullseye Yet?

Authors:  Guillem Macip; Pol Garcia-Segura; Júlia Mestres-Truyol; Bryan Saldivar-Espinoza; Gerard Pujadas; Santiago Garcia-Vallvé
Journal:  Int J Mol Sci       Date:  2021-12-27       Impact factor: 5.923

8.  Hit Expansion of a Noncovalent SARS-CoV-2 Main Protease Inhibitor.

Authors:  Jens Glaser; Ada Sedova; Stephanie Galanie; Daniel W Kneller; Russell B Davidson; Elvis Maradzike; Sara Del Galdo; Audrey Labbé; Darren J Hsu; Rupesh Agarwal; Dmytro Bykov; Arnold Tharrington; Jerry M Parks; Dayle M A Smith; Isabella Daidone; Leighton Coates; Andrey Kovalevsky; Jeremy C Smith
Journal:  ACS Pharmacol Transl Sci       Date:  2022-04-04

9.  Hydroxamate and thiosemicarbazone: Two highly promising scaffolds for the development of SARS-CoV-2 antivirals.

Authors:  Yin-Sui Xu; Jia-Zhu Chigan; Jia-Qi Li; Huan-Huan Ding; Le-Yun Sun; Lu Liu; Zhenxin Hu; Ke-Wu Yang
Journal:  Bioorg Chem       Date:  2022-04-18       Impact factor: 5.307

10.  Repurposing of HIV/HCV protease inhibitors against SARS-CoV-2 3CLpro.

Authors:  Ling Ma; Quanjie Li; Yongli Xie; Dongrong Yi; Saisai Guo; Fei Guo; Jing Wang; Long Yang; Shan Cen
Journal:  Antiviral Res       Date:  2022-09-23       Impact factor: 10.103

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