| Literature DB >> 34791795 |
Farzaneh Darbeheshti1,2, Mojdeh Mahdiannasser2, Zahra Noroozi3, Zahra Firoozi1, Behnam Mansoori4, Abdolreza Daraei5, Milad Bastami6, Ziba Nariman-Saleh-Fam7, Elahe Valipour2, Yaser Mansoori1,6.
Abstract
The aggressive and highly metastatic nature of triple-negative breast cancer (TNBC) causes patients to suffer from the poor outcome. HIF-1 signalling pathway is a prominent pathway that contributes to angiogenesis and metastasis progression in tumours. On the contrary, the undeniable importance of circular RNAs (circRNAs) as multifunctional non-coding RNAs (ncRNAs) has been identified in breast cancer. These ncRNAs owing to their high stability and specificity have been becoming a hotspot in cancer researches. circRNAs act as competing endogenous RNAs (ceRNAs) and compete with mRNAs for shared miRNAs, thus modulate gene expression. Since the most dysregulated biological functions in TNBC are associated with cellular invasion, understanding the molecular pathogenesis of these processes is a crucial step towards the development of new treatment approaches. The purpose of this study is to undermine the circRNA-associated ceRNA network involved in HIF-1 signalling in TNBC using an integrative bioinformatics approach. In the next step, the novel circ_0047303-mediated ceRNA regulatory axes have been extracted and validated across TNBC samples. We show that circ_0047303 has the highest degree in the circRNA-associated ceRNA network and shows a significant up-expression in TNBC. Moreover, our results suggest that circ_0047303 could mediate the upregulation of key angiogenesis-related genes, including HIF-1, EIF4E2 and VEGFA in TNBC through sponging the tumour-suppressive miRNAs. The circ_0047303 could be a promising molecular biomarker and/or therapeutic target for TNBC.Entities:
Keywords: HIF-1 signalling; angiogenesis; ceRNA network; circ_0047303; microarray; triple-negative breast cancer
Mesh:
Substances:
Year: 2021 PMID: 34791795 PMCID: PMC8650046 DOI: 10.1111/jcmm.17066
Source DB: PubMed Journal: J Cell Mol Med ISSN: 1582-1838 Impact factor: 5.310
FIGURE 1Workflow of in silico study
FIGURE 2Volcano plot of differentially expressed circRNAs (DECs) in triple‐negative breast cancer (TNBC) compared with normal mammary tissues according to GSE101124. The cut‐off points of fold change (log2 scaled) and p value (log10 scaled) are shown by the red dash lines. The red points represent down‐expressed DECs in TNBC, and the green point represents up‐expressed DECs
FIGURE 3CircRNA/miRNA/mRNA regulatory network involving in the HIF‐1 signalling pathway in TNBC. Yellow circles, red triangles and green rectangles represent circRNAs, miRNAs and mRNAs, respectively. The node size of circRNAs corresponds to their out‐degree
FIGURE 4(A) Confirmation of the back‐splice junction site of circ_0047303 by Sanger sequencing. (B) and (C) The expression level of circ_0047303 detected by qRT‐PCR in TNBC samples and matched adjacent normal tissues. (D) Receiver operating characteristic (ROC) curve analysis of the expression of circ_0047303 in TNBC versus normal tissues; AUC, area under the ROC curve. (E) Association of circ_0047303 expression status with disease‐free survival in breast cancer. The red and green lines indicate patients with the high (N = 19) and low (N = 11) expression level of circ_0047303, respectively
FIGURE 5(A) Evaluated circ_0047303‐mediated ceRNA network involved in HIF‐1 signalling pathway in TNBC. The number of edges between circ_0047303 and miRNAs indicates the number of MRE on the circ_0047303 sequence. (B) Expression levels of HIF1A, VEGFA, PGK1, EIF4E2 and IGF1R was detected by qRT‐PCR in TNBC samples and matched adjacent normal tissues. (C) The expression correlation analysis of circ_0047303 with HIF1A, VEGFA and EIF4E2 expression levels in the studied samples. The regression equation has been calculated by linear regression analysis
FIGURE 6(A) Correlation matrix between circ_0047303 and its downstream gene targets has been represented by a colour scale based on Pearson's correlation coefficient. (B) Hierarchical clustering showing expression values (log2 transformed) of circ_0047303 and its downstream gene targets in TNBC samples and adjacent normal tissues. The expression values are arranged from red (high relative expression) to green (lower relative expression). Each row shows one sample, and each column demonstrates a transcript
Association of circ_0047303 expression with clinicopathological features in BC patients
| Characteristic | Subgroups | No. of patients (%) | Median |
|
|---|---|---|---|---|
| Age | <50 | 24 (60) | 5.89 | 0.852 |
| ≥50 | 16 (40) | 5.54 | ||
| Tumour size | <2 | 10 (25) | 1.59 |
|
| 2–5 | 26 (65) | 7.27 | ||
| >5 | 4 (10) | 6.23 | ||
| Histologic grade | G1 | 7 (17.5) | 7.54 | 0.523 |
| G2 | 20 (50) | 4.81 | ||
| G3 | 13 (32.5) | 6.22 | ||
| TNM stage | I | 8 (21) | 1.01 |
|
| II | 17 (44.7) | 3.55 | ||
| III | 11 (29) | 11.24 | ||
| IV | 2 (5.3) | 13.3 | ||
| Lymph nodes metastasis | Yes | 18 (45) | 8.02 |
|
| No | 22 (55) | 2.05 | ||
| Histologic type of invasive carcinoma | IDC | 35 (87.5) | 5.9 | 0.96 |
| ILC | 5 (12.5) | 4.69 |
Abbreviations: IDC, invasive ductal carcinoma; ILC, invasive lobular carcinoma.
The significant associations are shown in bold.
Two patients information missing.