Literature DB >> 34791088

A review of Mendelian randomization in amyotrophic lateral sclerosis.

Thomas H Julian1, Sarah Boddy1, Mahjabin Islam1, Julian Kurz1, Katherine J Whittaker1, Tobias Moll1, Calum Harvey1, Sai Zhang2,3, Michael P Snyder2,3, Christopher McDermott1, Johnathan Cooper-Knock1, Pamela J Shaw1.   

Abstract

Amyotrophic lateral sclerosis is a relatively common and rapidly progressive neurodegenerative disease that, in the majority of cases, is thought to be determined by a complex gene-environment interaction. Exponential growth in the number of performed genome-wide association studies combined with the advent of Mendelian randomization is opening significant new opportunities to identify environmental exposures that increase or decrease the risk of amyotrophic lateral sclerosis. Each of these discoveries has the potential to shape new therapeutic interventions. However, to do so, rigorous methodological standards must be applied in the performance of Mendelian randomization. We have reviewed Mendelian randomization studies performed in amyotrophic lateral sclerosis to date. We identified 20 Mendelian randomization studies, including evaluation of physical exercise, adiposity, cognitive performance, immune function, blood lipids, sleep behaviours, educational attainment, alcohol consumption, smoking and type 2 diabetes mellitus. We have evaluated each study using gold standard methodology supported by the Mendelian randomization literature and the STROBE-Mendelian randomization checklist. Where discrepancies exist between Mendelian randomization studies, we suggest the underlying reasons. A number of studies conclude that there is a causal link between blood lipids and risk of amyotrophic lateral sclerosis; replication across different datasets and even different populations adds confidence. For other putative risk factors, such as smoking and immune function, Mendelian randomization studies have provided cause for doubt. We highlight the use of positive control analyses in choosing exposure single nucleotide polymorphisms (SNPs) to make up the Mendelian randomization instrument, use of SNP clumping to avoid false positive results due to SNPs in linkage and the importance of multiple testing correction. We discuss the implications of survival bias for study of late age of onset diseases such as amyotrophic lateral sclerosis and make recommendations to mitigate this potentially important confounder. For Mendelian randomization to be useful to the amyotrophic lateral sclerosis field, high methodological standards must be applied to ensure reproducibility. Mendelian randomization is already an impactful tool, but poor-quality studies will lead to incorrect interpretations by a field that includes non-statisticians, wasted resources and missed opportunities.
© The Author(s) (2021). Published by Oxford University Press on behalf of the Guarantors of Brain. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  Mendelian randomization; amyotrophic lateral sclerosis; epidemiology

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Year:  2022        PMID: 34791088      PMCID: PMC9050546          DOI: 10.1093/brain/awab420

Source DB:  PubMed          Journal:  Brain        ISSN: 0006-8950            Impact factor:   15.255


  71 in total

1.  Using family members to augment genetic case-control studies of a life-threatening disease.

Authors:  Lu Chen; Clarice R Weinberg; Jinbo Chen
Journal:  Stat Med       Date:  2016-02-11       Impact factor: 2.373

2.  Polygenic link between blood lipids and amyotrophic lateral sclerosis.

Authors:  Xu Chen; Solmaz Yazdani; Fredrik Piehl; Patrik K E Magnusson; Fang Fang
Journal:  Neurobiol Aging       Date:  2018-03-27       Impact factor: 4.673

3.  Potential roles of gut microbiome and metabolites in modulating ALS in mice.

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Journal:  Nature       Date:  2019-07-22       Impact factor: 49.962

4.  A Mendelian Randomization-Based Approach to Identify Early and Sensitive Diagnostic Biomarkers of Disease.

Authors:  Pedrum Mohammadi-Shemirani; Jennifer Sjaarda; Hertzel C Gerstein; Darin J Treleaven; Michael Walsh; Johannes F Mann; Matthew J McQueen; Sibylle Hess; Guillaume Paré
Journal:  Clin Chem       Date:  2018-10-18       Impact factor: 8.327

5.  Causal effects of serum metabolites on amyotrophic lateral sclerosis: A Mendelian randomization study.

Authors:  Lihong Yang; Xiaohong Lv; Hanzhi Du; Di Wu; Mengchang Wang
Journal:  Prog Neuropsychopharmacol Biol Psychiatry       Date:  2019-10-24       Impact factor: 5.067

6.  Rayyan-a web and mobile app for systematic reviews.

Authors:  Mourad Ouzzani; Hossam Hammady; Zbys Fedorowicz; Ahmed Elmagarmid
Journal:  Syst Rev       Date:  2016-12-05

7.  Guidelines for performing Mendelian randomization investigations.

Authors:  Stephen Burgess; George Davey Smith; Neil M Davies; Frank Dudbridge; Dipender Gill; M Maria Glymour; Fernando P Hartwig; Michael V Holmes; Cosetta Minelli; Caroline L Relton; Evropi Theodoratou
Journal:  Wellcome Open Res       Date:  2020-04-28

8.  Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.

Authors:  Yann C Klimentidis; David A Raichlen; Jennifer Bea; David O Garcia; Nathan E Wineinger; Lawrence J Mandarino; Gene E Alexander; Zhao Chen; Scott B Going
Journal:  Int J Obes (Lond)       Date:  2018-06-13       Impact factor: 5.095

9.  Reading Mendelian randomisation studies: a guide, glossary, and checklist for clinicians.

Authors:  Neil M Davies; Michael V Holmes; George Davey Smith
Journal:  BMJ       Date:  2018-07-12

10.  UK case control study of smoking and risk of amyotrophic lateral sclerosis.

Authors:  Sarah Opie-Martin; Ashley Jones; Alfredo Iacoangeli; Ahmad Al-Khleifat; Mohamed Oumar; Pamela J Shaw; Chris E Shaw; Karen E Morrison; Robyn E Wootton; George Davey-Smith; Neil Pearce; Ammar Al-Chalabi
Journal:  Amyotroph Lateral Scler Frontotemporal Degener       Date:  2020-04-17       Impact factor: 4.092

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  2 in total

1.  Unbiased metabolome screen leads to personalized medicine strategy for amyotrophic lateral sclerosis.

Authors:  Sarah Boddy; Mahjabin Islam; Tobias Moll; Julian Kurz; David Burrows; Alexander McGown; Anushka Bhargava; Thomas H Julian; Calum Harvey; Jack Ng Marshall; Benjamin Pc Hall; Scott P Allen; Kevin P Kenna; Eleanor Sanderson; Sai Zhang; Tennore Ramesh; Michael P Snyder; Pamela J Shaw; Christopher McDermott; Johnathan Cooper-Knock
Journal:  Brain Commun       Date:  2022-03-17

Review 2.  Human tissue lead (Pb) levels and amyotrophic lateral sclerosis: a systematic review and meta-analysis of case-control studies.

Authors:  Cristiano Farace; Giovanni Fiorito; Giuliana Solinas; Roberto Madeddu; Andrea Pisano; Federica Etzi; Angela Sabalic; Grazia Fenu; Yolande Asara
Journal:  Neurol Sci       Date:  2022-07-09       Impact factor: 3.830

  2 in total

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