Literature DB >> 34786731

Risk controlled decision trees and random forests for precision Medicine.

Kevin Doubleday1, Jin Zhou2, Hua Zhou2, Haoda Fu3.   

Abstract

Statistical methods generating individualized treatment rules (ITRs) often focus on maximizing expected benefit, but these rules may expose patients to excess risk. For instance, aggressive treatment of type 2 diabetes (T2D) with insulin therapies may result in an ITR which controls blood glucose levels but increases rates of hypoglycemia, diminishing the appeal of the ITR. This work proposes two methods to identify risk-controlled ITRs (rcITR), a class of ITR which maximizes a benefit while controlling risk at a prespecified threshold. A novel penalized recursive partitioning algorithm is developed which optimizes an unconstrained, penalized value function. The final rule is a risk-controlled decision tree (rcDT) that is easily interpretable. A natural extension of the rcDT model, risk controlled random forests (rcRF), is also proposed. Simulation studies demonstrate the robustness of rcRF modeling. Three variable importance measures are proposed to further guide clinical decision-making. Both rcDT and rcRF procedures can be applied to data from randomized controlled trials or observational studies. An extensive simulation study interrogates the performance of the proposed methods. A data analysis of the DURABLE diabetes trial in which two therapeutics were compared is additionally presented. An R package implements the proposed methods ( https://github.com/kdoub5ha/rcITR).
© 2021 John Wiley & Sons Ltd.

Entities:  

Keywords:  decision trees; precision medicine; random forests; risk control; variable importance

Mesh:

Year:  2021        PMID: 34786731      PMCID: PMC8863134          DOI: 10.1002/sim.9253

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  18 in total

Review 1.  Applications of propensity score methods in observational comparative effectiveness and safety research: where have we come and where should we go?

Authors:  Bijan J Borah; James P Moriarty; William H Crown; Jalpa A Doshi
Journal:  J Comp Eff Res       Date:  2013-11-22       Impact factor: 1.744

2.  Set-valued dynamic treatment regimes for competing outcomes.

Authors:  Eric B Laber; Daniel J Lizotte; Bradley Ferguson
Journal:  Biometrics       Date:  2014-01-08       Impact factor: 2.571

3.  Subgroup identification based on differential effect search--a recursive partitioning method for establishing response to treatment in patient subpopulations.

Authors:  Ilya Lipkovich; Alex Dmitrienko; Jonathan Denne; Gregory Enas
Journal:  Stat Med       Date:  2011-07-22       Impact factor: 2.373

4.  Residual Weighted Learning for Estimating Individualized Treatment Rules.

Authors:  Xin Zhou; Nicole Mayer-Hamblett; Umer Khan; Michael R Kosorok
Journal:  J Am Stat Assoc       Date:  2017-05-03       Impact factor: 5.033

5.  PERFORMANCE GUARANTEES FOR INDIVIDUALIZED TREATMENT RULES.

Authors:  Min Qian; Susan A Murphy
Journal:  Ann Stat       Date:  2011-04-01       Impact factor: 4.028

6.  Local control for identifying subgroups of interest in observational research: persistence of treatment for major depressive disorder.

Authors:  Douglas E Faries; Yi Chen; Ilya Lipkovich; Anthony Zagar; Xianchen Liu; Robert L Obenchain
Journal:  Int J Methods Psychiatr Res       Date:  2013-08-18       Impact factor: 4.035

7.  Linear Fitted-Q Iteration with Multiple Reward Functions.

Authors:  Daniel J Lizotte; Michael Bowling; Susan A Murphy
Journal:  J Mach Learn Res       Date:  2012-11       Impact factor: 3.654

Review 8.  Postprandial reactive hypoglycemia.

Authors:  J F Brun; C Fedou; J Mercier
Journal:  Diabetes Metab       Date:  2000-11       Impact factor: 6.041

9.  The DURABLE trial study design: comparing the safety, efficacy, and durability of insulin glargine to insulin lispro mix 75/25 added to oral antihyperglycemic agents in patients with type 2 diabetes.

Authors:  Jessie Fahrbach; Scott Jacober; Honghua Jiang; Sherry Martin
Journal:  J Diabetes Sci Technol       Date:  2008-09

Review 10.  Postprandial Reactive Hypoglycemia.

Authors:  Yüksel Altuntaş
Journal:  Sisli Etfal Hastan Tip Bul       Date:  2019-08-28
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  1 in total

1.  CAPITAL: Optimal subgroup identification via constrained policy tree search.

Authors:  Hengrui Cai; Wenbin Lu; Rachel Marceau West; Devan V Mehrotra; Lingkang Huang
Journal:  Stat Med       Date:  2022-07-07       Impact factor: 2.497

  1 in total

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