Literature DB >> 34782739

Sparse deconvolution improves the resolution of live-cell super-resolution fluorescence microscopy.

Weisong Zhao1, Shiqun Zhao2, Liuju Li2, Xiaoshuai Huang3, Shijia Xing2, Yulin Zhang2, Guohua Qiu1, Zhenqian Han1, Yingxu Shang4, De-En Sun5, Chunyan Shan6, Runlong Wu2, Lusheng Gu7, Shuwen Zhang7, Riwang Chen8, Jian Xiao9, Yanquan Mo2, Jianyong Wang8, Wei Ji7, Xing Chen5, Baoquan Ding4, Yanmei Liu2,10, Heng Mao11, Bao-Liang Song9, Jiubin Tan12,13, Jian Liu1,14, Haoyu Li15,16,17, Liangyi Chen18,19,20.   

Abstract

A main determinant of the spatial resolution of live-cell super-resolution (SR) microscopes is the maximum photon flux that can be collected. To further increase the effective resolution for a given photon flux, we take advantage of a priori knowledge about the sparsity and continuity of biological structures to develop a deconvolution algorithm that increases the resolution of SR microscopes nearly twofold. Our method, sparse structured illumination microscopy (Sparse-SIM), achieves ~60-nm resolution at a frame rate of up to 564 Hz, allowing it to resolve intricate structures, including small vesicular fusion pores, ring-shaped nuclear pores formed by nucleoporins and relative movements of inner and outer mitochondrial membranes in live cells. Sparse deconvolution can also be used to increase the three-dimensional resolution of spinning-disc confocal-based SIM, even at low signal-to-noise ratios, which allows four-color, three-dimensional live-cell SR imaging at ~90-nm resolution. Overall, sparse deconvolution will be useful to increase the spatiotemporal resolution of live-cell fluorescence microscopy.
© 2021. The Author(s), under exclusive licence to Springer Nature America, Inc.

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Year:  2021        PMID: 34782739     DOI: 10.1038/s41587-021-01092-2

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  47 in total

1.  ADVANCED IMAGING. Extended-resolution structured illumination imaging of endocytic and cytoskeletal dynamics.

Authors:  Dong Li; Lin Shao; Bi-Chang Chen; Xi Zhang; Mingshu Zhang; Brian Moses; Daniel E Milkie; Jordan R Beach; John A Hammer; Mithun Pasham; Tomas Kirchhausen; Michelle A Baird; Michael W Davidson; Pingyong Xu; Eric Betzig
Journal:  Science       Date:  2015-08-28       Impact factor: 47.728

2.  Dynamic clustered distribution of hemagglutinin resolved at 40 nm in living cell membranes discriminates between raft theories.

Authors:  Samuel T Hess; Travis J Gould; Manasa V Gudheti; Sarah A Maas; Kevin D Mills; Joshua Zimmerberg
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-24       Impact factor: 11.205

3.  Video-rate far-field optical nanoscopy dissects synaptic vesicle movement.

Authors:  Volker Westphal; Silvio O Rizzoli; Marcel A Lauterbach; Dirk Kamin; Reinhard Jahn; Stefan W Hell
Journal:  Science       Date:  2008-02-21       Impact factor: 47.728

4.  Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics.

Authors:  Hari Shroff; Catherine G Galbraith; James A Galbraith; Eric Betzig
Journal:  Nat Methods       Date:  2008-04-13       Impact factor: 28.547

Review 5.  Super-resolution microscopy approaches for live cell imaging.

Authors:  Antoine G Godin; Brahim Lounis; Laurent Cognet
Journal:  Biophys J       Date:  2014-10-21       Impact factor: 4.033

6.  Visualizing Intracellular Organelle and Cytoskeletal Interactions at Nanoscale Resolution on Millisecond Timescales.

Authors:  Yuting Guo; Di Li; Siwei Zhang; Yanrui Yang; Jia-Jia Liu; Xinyu Wang; Chong Liu; Daniel E Milkie; Regan P Moore; U Serdar Tulu; Daniel P Kiehart; Junjie Hu; Jennifer Lippincott-Schwartz; Eric Betzig; Dong Li
Journal:  Cell       Date:  2018-10-25       Impact factor: 41.582

7.  Fast, long-term, super-resolution imaging with Hessian structured illumination microscopy.

Authors:  Xiaoshuai Huang; Junchao Fan; Liuju Li; Haosen Liu; Runlong Wu; Yi Wu; Lisi Wei; Heng Mao; Amit Lal; Peng Xi; Liqiang Tang; Yunfeng Zhang; Yanmei Liu; Shan Tan; Liangyi Chen
Journal:  Nat Biotechnol       Date:  2018-04-11       Impact factor: 54.908

8.  Faster STORM using compressed sensing.

Authors:  Lei Zhu; Wei Zhang; Daniel Elnatan; Bo Huang
Journal:  Nat Methods       Date:  2012-04-22       Impact factor: 28.547

9.  Visualization of Membrane Pore in Live Cells Reveals a Dynamic-Pore Theory Governing Fusion and Endocytosis.

Authors:  Wonchul Shin; Lihao Ge; Gianvito Arpino; Seth A Villarreal; Edaeni Hamid; Huisheng Liu; Wei-Dong Zhao; Peter J Wen; Hsueh-Cheng Chiang; Ling-Gang Wu
Journal:  Cell       Date:  2018-04-05       Impact factor: 41.582

10.  Applying systems-level spectral imaging and analysis to reveal the organelle interactome.

Authors:  Alex M Valm; Sarah Cohen; Wesley R Legant; Justin Melunis; Uri Hershberg; Eric Wait; Andrew R Cohen; Michael W Davidson; Eric Betzig; Jennifer Lippincott-Schwartz
Journal:  Nature       Date:  2017-05-24       Impact factor: 49.962

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  5 in total

Review 1.  Smart imaging to empower brain-wide neuroscience at single-cell levels.

Authors:  Shuxia Guo; Jie Xue; Jian Liu; Xiangqiao Ye; Yichen Guo; Di Liu; Xuan Zhao; Feng Xiong; Xiaofeng Han; Hanchuan Peng
Journal:  Brain Inform       Date:  2022-05-11

2.  Super-resolution microscopy: a brief history and new avenues.

Authors:  Kirti Prakash; Benedict Diederich; Rainer Heintzmann; Lothar Schermelleh
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2022-02-14       Impact factor: 4.226

3.  An investigation of the influence of microstructure surface topography on the imaging mechanism to explore super-resolution microstructure.

Authors:  Wenpeng Fu; Chenyang Zhao; Wen Xue; Changlin Li
Journal:  Sci Rep       Date:  2022-08-11       Impact factor: 4.996

4.  Dissection of the long-range projections of specific neurons at the synaptic level in the whole mouse brain.

Authors:  Jiaojiao Tian; Miao Ren; Peilin Zhao; Shukang Luo; Yingying Chen; Xiaofeng Xu; Tao Jiang; Qingtao Sun; Anan Li; Hui Gong; Xiangning Li; Qingming Luo
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-26       Impact factor: 12.779

Review 5.  Imaging of Hepatitis B Virus Nucleic Acids: Current Advances and Challenges.

Authors:  Luisa F Bustamante-Jaramillo; Joshua Fingal; Marie-Lise Blondot; Gustaf E Rydell; Michael Kann
Journal:  Viruses       Date:  2022-03-08       Impact factor: 5.048

  5 in total

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