Literature DB >> 34780182

Direct Measurement of Intermolecular Mechanical Force for Nonspecific Interactions between Small Molecules.

Shankar Pandey1, Yuan Xiang2, Dirk Friedrich1, Yongsheng Leng2, Hanbin Mao1.   

Abstract

Mechanical force can evaluate intramolecular interactions in macromolecules. Because of the rapid motion of small molecules, it is extremely challenging to measure mechanical forces of nonspecific intermolecular interactions. Here, we used optical tweezers to directly examine the intermolecular mechanical force (IMMF) of nonspecific interactions between two cholesterols. We found that IMMFs of dimeric cholesterol complexes were dependent on the orientation of the interaction. The surprisingly high IMMF in cholesterol dimers (∼30 pN) is comparable to the mechanical stability of DNA secondary structures. Using Hess-like cycles, we quantified that changes in free energy of solubilizing cholesterol (ΔGsolubility) by β-cyclodextrin (βCD) and methylated βCD (Me-βCD) were as low as -16 and -27 kcal/mol, respectively. Compared to the ΔGsolubility of cholesterols in water (5.1 kcal/mol), these values indicated that cyclodextrins can easily solubilize cholesterols. Our results demonstrated that the IMMF can serve as a generic and multipurpose variable to dissect nonspecific intermolecular interactions among small molecules into orientational components.

Entities:  

Year:  2021        PMID: 34780182      PMCID: PMC8778946          DOI: 10.1021/acs.jpclett.1c03142

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  34 in total

1.  Click Chemistry: Diverse Chemical Function from a Few Good Reactions.

Authors:  Hartmuth C. Kolb; M. G. Finn; K. Barry Sharpless
Journal:  Angew Chem Int Ed Engl       Date:  2001-06-01       Impact factor: 15.336

Review 2.  Probing the relation between force--lifetime--and chemistry in single molecular bonds.

Authors:  E Evans
Journal:  Annu Rev Biophys Biomol Struct       Date:  2001

3.  Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality.

Authors:  Jan Liphardt; Sophie Dumont; Steven B Smith; Ignacio Tinoco; Carlos Bustamante
Journal:  Science       Date:  2002-06-07       Impact factor: 47.728

4.  Calculating potentials of mean force from steered molecular dynamics simulations.

Authors:  Sanghyun Park; Klaus Schulten
Journal:  J Chem Phys       Date:  2004-04-01       Impact factor: 3.488

5.  Cyclodextrin promotes atherosclerosis regression via macrophage reprogramming.

Authors:  Sebastian Zimmer; Alena Grebe; Siril S Bakke; Niklas Bode; Bente Halvorsen; Thomas Ulas; Mona Skjelland; Dominic De Nardo; Larisa I Labzin; Anja Kerksiek; Chris Hempel; Michael T Heneka; Victoria Hawxhurst; Michael L Fitzgerald; Jonel Trebicka; Ingemar Björkhem; Jan-Åke Gustafsson; Marit Westerterp; Alan R Tall; Samuel D Wright; Terje Espevik; Joachim L Schultze; Georg Nickenig; Dieter Lütjohann; Eicke Latz
Journal:  Sci Transl Med       Date:  2016-04-06       Impact factor: 17.956

6.  G-quadruplex and i-motif are mutually exclusive in ILPR double-stranded DNA.

Authors:  Soma Dhakal; Zhongbo Yu; Ryan Konik; Yunxi Cui; Deepak Koirala; Hanbin Mao
Journal:  Biophys J       Date:  2012-06-05       Impact factor: 4.033

Review 7.  Role of cholesterol in lipid raft formation: lessons from lipid model systems.

Authors:  John R Silvius
Journal:  Biochim Biophys Acta       Date:  2003-03-10

8.  The condensing effect of cholesterol in lipid bilayers.

Authors:  Wei-Chin Hung; Ming-Tao Lee; Fang-Yu Chen; Huey W Huang
Journal:  Biophys J       Date:  2007-03-16       Impact factor: 4.033

9.  Two polymorphic cholesterol monohydrate crystal structures form in macrophage culture models of atherosclerosis.

Authors:  Neta Varsano; Fabio Beghi; Nadav Elad; Eva Pereiro; Tali Dadosh; Iddo Pinkas; Ana J Perez-Berna; Xueting Jin; Howard S Kruth; Leslie Leiserowitz; Lia Addadi
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-02       Impact factor: 11.205

10.  A single-molecule platform for investigation of interactions between G-quadruplexes and small-molecule ligands.

Authors:  Deepak Koirala; Soma Dhakal; Beth Ashbridge; Yuta Sannohe; Raphaël Rodriguez; Hiroshi Sugiyama; Shankar Balasubramanian; Hanbin Mao
Journal:  Nat Chem       Date:  2011-08-28       Impact factor: 24.427

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