Literature DB >> 34747059

Bayesian spatial models for voxel-wise prostate cancer classification using multi-parametric magnetic resonance imaging data.

Jin Jin1, Lin Zhang1, Ethan Leng2, Gregory J Metzger3, Joseph S Koopmeiners1.   

Abstract

Multi-parametric magnetic resonance imaging (mpMRI) has been playing an increasingly important role in the detection of prostate cancer (PCa). Various computer-aided detection algorithms were proposed for automated PCa detection by combining information in multiple mpMRI parameters. However, there are specific features of mpMRI, including between-voxel correlation within each prostate and heterogeneity across patients, that have not been fully explored but could potentially improve PCa detection if leveraged appropriately. This article proposes novel Bayesian approaches for voxel-wise PCa classification that accounts for spatial correlation and between-patient heterogeneity in the mpMRI data. Modeling the spatial correlation is challenging due to the extreme high dimensionality of the data, and we propose three scalable approaches based on Nearest Neighbor Gaussian Process (NNGP), reduced-rank approximation, and a conditional autoregressive (CAR) model that approximates a Gaussian Process with the Matérn covariance, respectively. Our simulation study shows that properly modeling the spatial correlation and between-patient heterogeneity can substantially improve PCa classification. Application to in vivo data illustrates that classification is improved by all three spatial modeling approaches considered, while modeling the between-patient heterogeneity does not further improve our classifiers. Among the proposed models, the NNGP-based model is recommended given its high classification accuracy and computational efficiency.
© 2021 John Wiley & Sons Ltd.

Entities:  

Keywords:  Bayesian hierarchical modeling; multi-parametric MRI; multiimage spatial modeling; nearest neighbor Gaussian process; voxel-wise PCa classification

Mesh:

Year:  2021        PMID: 34747059      PMCID: PMC9316890          DOI: 10.1002/sim.9245

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.497


  17 in total

1.  Computer-aided diagnosis of prostate cancer in the peripheral zone using multiparametric MRI.

Authors:  Emilie Niaf; Olivier Rouvière; Florence Mège-Lechevallier; Flavie Bratan; Carole Lartizien
Journal:  Phys Med Biol       Date:  2012-05-29       Impact factor: 3.609

2.  Automatic computer-aided detection of prostate cancer based on multiparametric magnetic resonance image analysis.

Authors:  P C Vos; J O Barentsz; N Karssemeijer; H J Huisman
Journal:  Phys Med Biol       Date:  2012-03-06       Impact factor: 3.609

3.  PI-RADS Prostate Imaging - Reporting and Data System: 2015, Version 2.

Authors:  Jeffrey C Weinreb; Jelle O Barentsz; Peter L Choyke; Francois Cornud; Masoom A Haider; Katarzyna J Macura; Daniel Margolis; Mitchell D Schnall; Faina Shtern; Clare M Tempany; Harriet C Thoeny; Sadna Verma
Journal:  Eur Urol       Date:  2015-10-01       Impact factor: 20.096

4.  Hierarchical Nearest-Neighbor Gaussian Process Models for Large Geostatistical Datasets.

Authors:  Abhirup Datta; Sudipto Banerjee; Andrew O Finley; Alan E Gelfand
Journal:  J Am Stat Assoc       Date:  2016-08-18       Impact factor: 5.033

5.  Development of a measure for evaluating lesion-wise performance of CAD algorithms in the context of mpMRI detection of prostate cancer.

Authors:  Ethan Leng; Benjamin Spilseth; Lin Zhang; Jin Jin; Joseph S Koopmeiners; Gregory J Metzger
Journal:  Med Phys       Date:  2018-04-16       Impact factor: 4.071

6.  Gaussian predictive process models for large spatial data sets.

Authors:  Sudipto Banerjee; Alan E Gelfand; Andrew O Finley; Huiyan Sang
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2008-09-01       Impact factor: 4.488

7.  Detection of Prostate Cancer: Quantitative Multiparametric MR Imaging Models Developed Using Registered Correlative Histopathology.

Authors:  Gregory J Metzger; Chaitanya Kalavagunta; Benjamin Spilseth; Patrick J Bolan; Xiufeng Li; Diane Hutter; Jung W Nam; Andrew D Johnson; Jonathan C Henriksen; Laura Moench; Badrinath Konety; Christopher A Warlick; Stephen C Schmechel; Joseph S Koopmeiners
Journal:  Radiology       Date:  2016-01-29       Impact factor: 11.105

8.  Prostate cancer localization using multiparametric MR imaging: comparison of Prostate Imaging Reporting and Data System (PI-RADS) and Likert scales.

Authors:  Andrew B Rosenkrantz; Sooah Kim; Ruth P Lim; Nicole Hindman; Fang-Ming Deng; James S Babb; Samir S Taneja
Journal:  Radiology       Date:  2013-06-20       Impact factor: 11.105

9.  Magnetic resonance imaging for the detection, localisation, and characterisation of prostate cancer: recommendations from a European consensus meeting.

Authors:  Louise Dickinson; Hashim U Ahmed; Clare Allen; Jelle O Barentsz; Brendan Carey; Jurgen J Futterer; Stijn W Heijmink; Peter J Hoskin; Alex Kirkham; Anwar R Padhani; Raj Persad; Philippe Puech; Shonit Punwani; Aslam S Sohaib; Bertrand Tombal; Arnauld Villers; Jan van der Meulen; Mark Emberton
Journal:  Eur Urol       Date:  2010-12-21       Impact factor: 20.096

10.  Automated prostate cancer detection via comprehensive multi-parametric magnetic resonance imaging texture feature models.

Authors:  Farzad Khalvati; Alexander Wong; Masoom A Haider
Journal:  BMC Med Imaging       Date:  2015-08-05       Impact factor: 1.930

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