Literature DB >> 34730336

New Role for Radical SAM Enzymes in the Biosynthesis of Thio(seleno)oxazole RiPP Natural Products.

Julia K Lewis1, Andrew S Jochimsen1, Sarah J Lefave1, Anthony P Young1, William M Kincannon1, Andrew G Roberts1, Matthew T Kieber-Emmons1, Vahe Bandarian1.   

Abstract

Ribosomally synthesized post-translationally modified peptides (RiPPs) are ubiquitous and represent a structurally diverse class of natural products. The ribosomally encoded precursor polypeptides are often extensively modified post-translationally by enzymes that are encoded by coclustered genes. Radical S-adenosyl-l-methionine (SAM) enzymes catalyze numerous chemically challenging transformations. In RiPP biosynthetic pathways, these transformations include the formation of C-H, C-C, C-S, and C-O linkages. In this paper, we show that the Geobacter lovleyi sbtM gene encodes a radical SAM protein, SbtM, which catalyzes the cyclization of a Cys/SeCys residue in a minimal peptide substrate. Biochemical studies of this transformation support a mechanism involving H-atom abstraction at the C-3 of the substrate Cys to initiate the chemistry. Several possible cyclization products were considered. The collective biochemical, spectroscopic, mass spectral, and computational observations point to a thiooxazole as the product of the SbtM-catalyzed modification. To our knowledge, this is the first example of a radical SAM enzyme that catalyzes a transformation involving a SeCys-containing peptide and represents a new paradigm for formation of oxazole-containing RiPP natural products.

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Year:  2021        PMID: 34730336      PMCID: PMC8935624          DOI: 10.1021/acs.biochem.1c00469

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  51 in total

1.  The radical SAM enzyme AlbA catalyzes thioether bond formation in subtilosin A.

Authors:  Leif Flühe; Thomas A Knappe; Michael J Gattner; Antje Schäfer; Olaf Burghaus; Uwe Linne; Mohamed A Marahiel
Journal:  Nat Chem Biol       Date:  2012-02-26       Impact factor: 15.040

Review 2.  The Radical SAM Superfamily.

Authors:  Perry A Frey; Adrian D Hegeman; Frank J Ruzicka
Journal:  Crit Rev Biochem Mol Biol       Date:  2008 Jan-Feb       Impact factor: 8.250

3.  Ab initio calculations of proline vibrations with and without water: consequences on the infrared spectra of proline-rich proteins.

Authors:  Amélie Banc; Bernard Desbat; Dominique Cavagnat
Journal:  Appl Spectrosc       Date:  2011-07       Impact factor: 2.388

Review 4.  Radical S-adenosylmethionine enzymes.

Authors:  Joan B Broderick; Benjamin R Duffus; Kaitlin S Duschene; Eric M Shepard
Journal:  Chem Rev       Date:  2014-01-29       Impact factor: 60.622

5.  Natural noncanonical protein splicing yields products with diverse β-amino acid residues.

Authors:  Brandon I Morinaka; Edgars Lakis; Marjan Verest; Maximilian J Helf; Thibault Scalvenzi; Anna L Vagstad; James Sims; Shinichi Sunagawa; Muriel Gugger; Jörn Piel
Journal:  Science       Date:  2018-02-16       Impact factor: 47.728

6.  A Desaturase-Like Enzyme Catalyzes Oxazole Formation in Pseudomonas Indolyloxazole Alkaloids.

Authors:  Alexander O Brachmann; Silke I Probst; Joel Rüthi; Darya Dudko; Helge B Bode; Jörn Piel
Journal:  Angew Chem Int Ed Engl       Date:  2021-03-05       Impact factor: 15.336

Review 7.  C-C bond forming radical SAM enzymes involved in the construction of carbon skeletons of cofactors and natural products.

Authors:  Kenichi Yokoyama; Edward A Lilla
Journal:  Nat Prod Rep       Date:  2018-07-18       Impact factor: 13.423

8.  In vitro characterization of AtsB, a radical SAM formylglycine-generating enzyme that contains three [4Fe-4S] clusters.

Authors:  Tyler L Grove; Kyung-Hoon Lee; Jennifer St Clair; Carsten Krebs; Squire J Booker
Journal:  Biochemistry       Date:  2008-06-18       Impact factor: 3.162

9.  Nitrate-inducible formate dehydrogenase in Escherichia coli K-12. I. Nucleotide sequence of the fdnGHI operon and evidence that opal (UGA) encodes selenocysteine.

Authors:  B L Berg; J Li; J Heider; V Stewart
Journal:  J Biol Chem       Date:  1991-11-25       Impact factor: 5.157

Review 10.  New developments in RiPP discovery, enzymology and engineering.

Authors:  Manuel Montalbán-López; Thomas A Scott; Sangeetha Ramesh; Imran R Rahman; Auke J van Heel; Jakob H Viel; Vahe Bandarian; Elke Dittmann; Olga Genilloud; Yuki Goto; María José Grande Burgos; Colin Hill; Seokhee Kim; Jesko Koehnke; John A Latham; A James Link; Beatriz Martínez; Satish K Nair; Yvain Nicolet; Sylvie Rebuffat; Hans-Georg Sahl; Dipti Sareen; Eric W Schmidt; Lutz Schmitt; Konstantin Severinov; Roderich D Süssmuth; Andrew W Truman; Huan Wang; Jing-Ke Weng; Gilles P van Wezel; Qi Zhang; Jin Zhong; Jörn Piel; Douglas A Mitchell; Oscar P Kuipers; Wilfred A van der Donk
Journal:  Nat Prod Rep       Date:  2020-09-16       Impact factor: 15.111

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  2 in total

Review 1.  RaS-RiPPs in Streptococci and the Human Microbiome.

Authors:  Kenzie A Clark; Leah B Bushin; Mohammad R Seyedsayamdost
Journal:  ACS Bio Med Chem Au       Date:  2022-03-21

2.  Leveraging Substrate Promiscuity of a Radical S-Adenosyl-L-methionine RiPP Maturase toward Intramolecular Peptide Cross-Linking Applications.

Authors:  Karsten A S Eastman; William M Kincannon; Vahe Bandarian
Journal:  ACS Cent Sci       Date:  2022-08-01       Impact factor: 18.728

  2 in total

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