Literature DB >> 34726178

Crystal structure of acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis.

Kohei Sasamoto1, Tomoki Himiyama2, Kunihiko Moriyoshi3, Takashi Ohmoto3, Koichi Uegaki4, Yoshiaki Nishiya1, Tsutomu Nakamura2.   

Abstract

The acetylxylan esterases (AXEs) classified into carbohydrate esterase family 4 (CE4) are metalloenzymes that catalyze the deacetylation of acetylated carbohydrates. AXE from Caldanaerobacter subterraneus subsp. tengcongensis (TTE0866), which belongs to CE4, is composed of three parts: a signal sequence (residues 1-22), an N-terminal region (NTR; residues 23-135) and a catalytic domain (residues 136-324). TTE0866 catalyzes the deacetylation of highly substituted cellulose acetate and is expected to be useful for industrial applications in the reuse of resources. In this study, the crystal structure of TTE0866 (residues 23-324) was successfully determined. The crystal diffracted to 1.9 Å resolution and belonged to space group I212121. The catalytic domain (residues 136-321) exhibited a (β/α)7-barrel topology. However, electron density was not observed for the NTR (residues 23-135). The crystal packing revealed the presence of an intermolecular space without observable electron density, indicating that the NTR occupies this space without a defined conformation or was truncated during the crystallization process. Although the active-site conformation of TTE0866 was found to be highly similar to those of other CE4 enzymes, the orientation of its Trp264 side chain near the active site was clearly distinct. The unique orientation of the Trp264 side chain formed a different-shaped cavity within TTE0866, which may contribute to its reactivity towards highly substituted cellulose acetate.

Entities:  

Keywords:  Caldanaerobacter subterraneus subsp. tengcongensis; acetylxylan esterase; carbohydrate esterase family 4; cellulose acetate; crystal structure; thermophilic enzymes

Mesh:

Substances:

Year:  2021        PMID: 34726178      PMCID: PMC8561816          DOI: 10.1107/S2053230X21009675

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  29 in total

1.  Functional analysis of the carbohydrate-binding module of an esterase from Neisseria sicca SB involved in the degradation of cellulose acetate.

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Journal:  Biosci Biotechnol Biochem       Date:  2010-09-07       Impact factor: 2.043

2.  Expression and characterization of a thermostable acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis involved in the degradation of insoluble cellulose acetate.

Authors:  Kunihiko Moriyoshi; Daisuke Koma; Hayato Yamanaka; Kiyofumi Sakai; Takashi Ohmoto
Journal:  Biosci Biotechnol Biochem       Date:  2013-12-07       Impact factor: 2.043

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Journal:  J Biol Chem       Date:  2019-11-05       Impact factor: 5.157

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Authors:  Vasiliki E Fadouloglou; Stavroula Balomenou; Michalis Aivaliotis; Dina Kotsifaki; Sofia Arnaouteli; Anastasia Tomatsidou; Giorgos Efstathiou; Nikos Kountourakis; Sofia Miliara; Marianna Griniezaki; Aleka Tsalafouta; Spiros A Pergantis; Ivo G Boneca; Nicholas M Glykos; Vassilis Bouriotis; Michael Kokkinidis
Journal:  J Am Chem Soc       Date:  2017-04-05       Impact factor: 15.419

7.  A complete sequence of the T. tengcongensis genome.

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Journal:  Genome Res       Date:  2002-05       Impact factor: 9.043

8.  Bioconversion of chitin to chitosan: purification and characterization of chitin deacetylase from Mucor rouxii.

Authors:  D Kafetzopoulos; A Martinou; V Bouriotis
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9.  Interrupting peptidoglycan deacetylation during Bdellovibrio predator-prey interaction prevents ultimate destruction of prey wall, liberating bacterial-ghosts.

Authors:  Carey Lambert; Thomas R Lerner; Nhat Khai Bui; Hannah Somers; Shin-Ichi Aizawa; Susan Liddell; Ana Clark; Waldemar Vollmer; Andrew L Lovering; R Elizabeth Sockett
Journal:  Sci Rep       Date:  2016-05-23       Impact factor: 4.379

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  1 in total

1.  Functional analysis of the N-terminal region of acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis.

Authors:  Kohei Sasamoto; Tomoki Himiyama; Kunihiko Moriyoshi; Takashi Ohmoto; Koichi Uegaki; Tsutomu Nakamura; Yoshiaki Nishiya
Journal:  FEBS Open Bio       Date:  2022-09-20       Impact factor: 2.792

  1 in total

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