Literature DB >> 34721652

Fast evolution of SARS-CoV-2 driven by deamination systems in hosts.

Yanping Zhang1,2, Wen Jiang1,2, Yan Li3, Xiaojie Jin1,2, Xiaoping Yang1,2, Pirun Zhang4, Wenqing Jiang1,2, Bin Yin1,2.   

Abstract

As an RNA virus, the fast evolution of SARS-CoV-2 is driven by the extensive RNA deamination by the host cells.
© 2021 Future Medicine Ltd.

Entities:  

Keywords:  RNA deamination; RNA structure; SARS-CoV-2; evolution; natural selection

Year:  2021        PMID： 34721652      PMCID： PMC8547201          DOI： 10.2217/fvl-2021-0181

Source DB:  PubMed          Journal:  Future Virol        ISSN： 1746-0794            Impact factor:   3.015


  15 in total

1.  Vienna RNA secondary structure server.

Authors:  Ivo L Hofacker
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  Structural basis for the modular recognition of single-stranded RNA by PPR proteins.

Authors:  Ping Yin; Quanxiu Li; Chuangye Yan; Ying Liu; Junjie Liu; Feng Yu; Zheng Wang; Jiafu Long; Jianhua He; Hong-Wei Wang; Jiawei Wang; Jian-Kang Zhu; Yigong Shi; Nieng Yan
Journal:  Nature       Date:  2013-10-27       Impact factor: 49.962

3.  Human coding RNA editing is generally nonadaptive.

Authors:  Guixia Xu; Jianzhi Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-24       Impact factor: 11.205

Review 4.  APOBECs and virus restriction.

Authors:  Reuben S Harris; Jaquelin P Dudley
Journal:  Virology       Date:  2015-03-26       Impact factor: 3.616

5.  Profiling the RNA editomes of wild-type C. elegans and ADAR mutants.

Authors:  Han-Qing Zhao; Pan Zhang; Hua Gao; Xiandong He; Yanmei Dou; August Y Huang; Xi-Ming Liu; Adam Y Ye; Meng-Qiu Dong; Liping Wei
Journal:  Genome Res       Date:  2014-11-04       Impact factor: 9.043

6.  Human C-to-U Coding RNA Editing Is Largely Nonadaptive.

Authors:  Zhen Liu; Jianzhi Zhang
Journal:  Mol Biol Evol       Date:  2018-04-01       Impact factor: 16.240

7.  Trade-off between Transcriptome Plasticity and Genome Evolution in Cephalopods.

Authors:  Noa Liscovitch-Brauer; Shahar Alon; Hagit T Porath; Boaz Elstein; Ron Unger; Tamar Ziv; Arie Admon; Erez Y Levanon; Joshua J C Rosenthal; Eli Eisenberg
Journal:  Cell       Date:  2017-04-06       Impact factor: 41.582

8.  A high resolution A-to-I editing map in the mouse identifies editing events controlled by pre-mRNA splicing.

Authors:  Konstantin Licht; Utkarsh Kapoor; Fabian Amman; Ernesto Picardi; David Martin; Prajakta Bajad; Michael F Jantsch
Journal:  Genome Res       Date:  2019-08-19       Impact factor: 9.043

9.  The Landscape of A-to-I RNA Editome Is Shaped by Both Positive and Purifying Selection.

Authors:  Yao Yu; Hongxia Zhou; Yimeng Kong; Bohu Pan; Longxian Chen; Hongbing Wang; Pei Hao; Xuan Li
Journal:  PLoS Genet       Date:  2016-07-28       Impact factor: 5.917

10.  Evidence for host-dependent RNA editing in the transcriptome of SARS-CoV-2.

Authors:  Salvatore Di Giorgio; Filippo Martignano; Maria Gabriella Torcia; Giorgio Mattiuz; Silvestro G Conticello
Journal:  Sci Adv       Date:  2020-06-17       Impact factor: 14.957
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  11 in total

1.  Evidence for selection on SARS-CoV-2 RNA translation revealed by the evolutionary dynamics of mutations in UTRs and CDSs.

Authors:  Lin Zhu; Qi Wang; Weiyu Zhang; Hao Hu; Kexin Xu
Journal:  RNA Biol       Date:  2022-01       Impact factor: 4.766

2.  The Sponge Interaction Between Circular RNA and microRNA Serves as a Fast-Evolving Mechanism That Suppresses Non-small Cell Lung Cancer (NSCLC) in Humans.

Authors:  Liqun Wu; Meiling Cao; Xiaoxin Pu; Baoyi Liu; Jinxiang Wang
Journal:  J Mol Evol       Date:  2022-08-29       Impact factor: 3.973

3.  RNA editing detection in SARS-CoV-2 transcriptome should be different from traditional SNV identification.

Authors:  Houhao Cai; Xiantao Liu; Xin Zheng
Journal:  J Appl Genet       Date:  2022-06-04       Impact factor: 2.653

4.  An evolutionarily conserved mechanism that amplifies the effect of deleterious mutations in osteosarcoma.

Authors:  Yankai Jiang; Fuqun Ge; Guoyong Sun; Haibin Wang
Journal:  Mol Genet Genomics       Date:  2022-01-21       Impact factor: 3.291

5.  Cost-Efficiency Optimization Serves as a Conserved Mechanism that Promotes Osteosarcoma in Mammals.

Authors:  Haibin Wang; Guoyong Sun; Yankai Jiang
Journal:  J Mol Evol       Date:  2022-01-21       Impact factor: 2.395

6.  SARS-CoV-2 competes with host mRNAs for efficient translation by maintaining the mutations favorable for translation initiation.

Authors:  Yanping Zhang; Xiaojie Jin; Haiyan Wang; Yaoyao Miao; Xiaoping Yang; Wenqing Jiang; Bin Yin
Journal:  J Appl Genet       Date:  2021-10-16       Impact factor: 3.240

7.  Poor evidence for host-dependent regular RNA editing in the transcriptome of SARS-CoV-2.

Authors:  Jinbao Zong; Yanping Zhang; Fenfen Guo; Changyuan Wang; Hong Li; Gaoyang Lin; Wenqing Jiang; Xiaoping Song; Xiufang Zhang; Feng Huang; Min Qi; Xin Zheng
Journal:  J Appl Genet       Date:  2022-02-18       Impact factor: 2.653

8.  Reconciling the debate on deamination on viral RNA.

Authors:  Lai Wei
Journal:  J Appl Genet       Date:  2022-05-04       Impact factor: 2.653

9.  uORF-Mediated Translational Regulation of ATF4 Serves as an Evolutionarily Conserved Mechanism Contributing to Non-Small-Cell Lung Cancer (NSCLC) and Stress Response.

Authors:  Wenjing Xiao; Yang Sun; Jinpeng Xu; Na Zhang; Lina Dong
Journal:  J Mol Evol       Date:  2022-08-13       Impact factor: 3.973

10.  Nothing in SARS-CoV-2 makes sense except in the light of RNA modification?

Authors:  Mingmei Zhao; Chunxiao Li; Yu Dong; Xuekun Wang; Wenqing Jiang; Yaogang Chen
Journal:  Future Virol       Date:  2022-07-19       Impact factor: 3.015
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