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Literature DB >> 12824340

Vienna RNA secondary structure server.

Abstract

The Vienna RNA secondary structure server provides a web interface to the most frequently used functions of the Vienna RNA software package for the analysis of RNA secondary structures. It currently offers prediction of secondary structure from a single sequence, prediction of the consensus secondary structure for a set of aligned sequences and the design of sequences that will fold into a predefined structure. All three services can be accessed via the Vienna RNA web server at http://rna.tbi.univie.ac.at/.

Mesh：

Substances：
RNA

Year: 2003 PMID： 12824340 PMCID： PMC169005 DOI： 10.1093/nar/gkg599

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

15 in total

Vienna RNA secondary structure server.

1. ConStruct: a tool for thermodynamic controlled prediction of conserved secondary structure.

2. Secondary structure prediction for aligned RNA sequences.

3. The equilibrium partition function and base pair binding probabilities for RNA secondary structure.

4. From sequences to shapes and back: a case study in RNA secondary structures.

5. "Well-determined" regions in RNA secondary structure prediction: analysis of small subunit ribosomal RNA.

6. Automatic detection of conserved RNA structure elements in complete RNA virus genomes.

7. Finding the most significant common sequence and structure motifs in a set of RNA sequences.

8. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics.

9. An improved algorithm for nucleic acid secondary structure display.

10. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.

1. Plant siRNAs from introns mediate DNA methylation of host genes.

2. Identification and developmental profiling of conserved and novel microRNAs in Manduca sexta.

3. Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome.

4. RNAmute: RNA secondary structure mutation analysis tool.

5. Deleterious mutation prediction in the secondary structure of RNAs.

6. The microRNA Registry.

7. ILM: a web server for predicting RNA secondary structures with pseudoknots.

8. RDfolder: a web server for prediction of RNA secondary structure.

9. Experimental transmission of pospiviroid populations to weed species characteristic of potato and hop fields.

10. Role of the highly structured 5'-end region of MDR1 mRNA in P-glycoprotein expression.