Literature DB >> 34717276

Multi-scale dynamics of heterochromatin repair.

Chiara Merigliano1, Irene Chiolo2.   

Abstract

Studies across different organisms show that nuclear architecture and dynamics play central roles in different aspects of homologous recombination (HR) repair. Here we review the most recent discoveries in this field, ranging from directed motions mediating relocalization pathways, to global chromatin mobilization, local DNA looping, and changes in repair focus properties associated with clustering and phase separation. We discuss how these dynamics work in different contexts, including molecular mechanisms and regulatory pathways involved. We specifically highlight how they function in pericentromeric heterochromatin, which presents a unique environment for HR repair given the abundance of repeated DNA sequences prone to aberrant recombination, the 'silent' chromatin state, and the phase separation characterizing this domain.
Copyright © 2021. Published by Elsevier Ltd.

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Year:  2021        PMID: 34717276      PMCID: PMC9388045          DOI: 10.1016/j.gde.2021.09.007

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   4.665


  78 in total

1.  A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

Authors:  Avinash Patel; Hyun O Lee; Louise Jawerth; Shovamayee Maharana; Marcus Jahnel; Marco Y Hein; Stoyno Stoynov; Julia Mahamid; Shambaditya Saha; Titus M Franzmann; Andrej Pozniakovski; Ina Poser; Nicola Maghelli; Loic A Royer; Martin Weigert; Eugene W Myers; Stephan Grill; David Drechsel; Anthony A Hyman; Simon Alberti
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

Review 2.  Nuclear actin filaments in DNA repair dynamics.

Authors:  Christopher Patrick Caridi; Matthias Plessner; Robert Grosse; Irene Chiolo
Journal:  Nat Cell Biol       Date:  2019-09-03       Impact factor: 28.824

3.  Drosophila Histone Demethylase KDM4A Has Enzymatic and Non-enzymatic Roles in Controlling Heterochromatin Integrity.

Authors:  Serafin U Colmenares; Joel M Swenson; Sasha A Langley; Cameron Kennedy; Sylvain V Costes; Gary H Karpen
Journal:  Dev Cell       Date:  2017-07-24       Impact factor: 12.270

4.  DNA double-strand breaks in heterochromatin elicit fast repair protein recruitment, histone H2AX phosphorylation and relocation to euchromatin.

Authors:  Burkhard Jakob; Jörn Splinter; Sandro Conrad; Kay-Obbe Voss; Daniele Zink; Marco Durante; Markus Löbrich; Gisela Taucher-Scholz
Journal:  Nucleic Acids Res       Date:  2011-04-21       Impact factor: 16.971

5.  Nuclear ARP2/3 drives DNA break clustering for homology-directed repair.

Authors:  Benjamin R Schrank; Tomas Aparicio; Yinyin Li; Wakam Chang; Brian T Chait; Gregg G Gundersen; Max E Gottesman; Jean Gautier
Journal:  Nature       Date:  2018-06-20       Impact factor: 49.962

6.  Phase separation of 53BP1 determines liquid-like behavior of DNA repair compartments.

Authors:  Sinan Kilic; Aleksandra Lezaja; Marco Gatti; Eliana Bianco; Jone Michelena; Ralph Imhof; Matthias Altmeyer
Journal:  EMBO J       Date:  2019-07-01       Impact factor: 11.598

7.  Bridging-induced phase separation induced by cohesin SMC protein complexes.

Authors:  Je-Kyung Ryu; Céline Bouchoux; Hon Wing Liu; Eugene Kim; Masashi Minamino; Ralph de Groot; Allard J Katan; Andrea Bonato; Davide Marenduzzo; Davide Michieletto; Frank Uhlmann; Cees Dekker
Journal:  Sci Adv       Date:  2021-02-10       Impact factor: 14.136

8.  Imaging the response to DNA damage in heterochromatin domains reveals core principles of heterochromatin maintenance.

Authors:  Anna Fortuny; Audrey Chansard; Pierre Caron; Odile Chevallier; Olivier Leroy; Olivier Renaud; Sophie E Polo
Journal:  Nat Commun       Date:  2021-04-23       Impact factor: 14.919

9.  Nuclear microtubule filaments mediate non-linear directional motion of chromatin and promote DNA repair.

Authors:  Roxanne Oshidari; Jonathan Strecker; Daniel K C Chung; Karan J Abraham; Janet N Y Chan; Christopher J Damaren; Karim Mekhail
Journal:  Nat Commun       Date:  2018-07-02       Impact factor: 14.919

10.  Pericentromeric heterochromatin is hierarchically organized and spatially contacts H3K9me2 islands in euchromatin.

Authors:  Yuh Chwen G Lee; Yuki Ogiyama; Nuno M C Martins; Brian J Beliveau; David Acevedo; C-Ting Wu; Giacomo Cavalli; Gary H Karpen
Journal:  PLoS Genet       Date:  2020-03-23       Impact factor: 5.917

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  2 in total

1.  Imaging the Response to DNA Damage in Heterochromatin Domains.

Authors:  Audrey Chansard; Enrico Pobega; Pierre Caron; Sophie E Polo
Journal:  Front Cell Dev Biol       Date:  2022-06-02

Review 2.  An Expanding Toolkit for Heterochromatin Repair Studies.

Authors:  Chetan C Rawal; Nadejda L Butova; Anik Mitra; Irene Chiolo
Journal:  Genes (Basel)       Date:  2022-03-17       Impact factor: 4.141

  2 in total

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