Literature DB >> 34716865

Genetic diversity and structure revealed by genomic microsatellite markers in Centella asiatica (L.) Urb., a plant with medicinal potential.

Sakthipriya Mathavaraj1, Kalluvettankuzhy Krishnannair Sabu2.   

Abstract

BACKGROUND: Around the world, medicinal plants are utilised for various purposes. Centella asiatica is one of the important medicinal plants widely used in many medicinal systems. Nevertheless, analysis of the genetic diversity would pave the way for its most suitable utilisation. METHODS AND
RESULTS: The present study analyses the genetic diversity and structure of eighty C. asiatica accessions collected from the southern states of India, using ten genomic microsatellite markers. The mean Nei's gene diversity (0.46) indicates considerable genetic diversity. Analysis of molecular variance (82.48%) exhibited significant genetic variance between samples within the population. The cluster analysis brought out the structure of the analysed populations as three subpopulations based on the genetic differentiation.
CONCLUSIONS: The study showed significant intra-population variation, predominant inbreeding and population differentiation in C. asiatica. The findings will help better understanding of the genetic structure and gene pool of the plant.
© 2021. The Author(s), under exclusive licence to Springer Nature B.V.

Entities:  

Keywords:  Cluster analysis; Conservation; Genetic variation; Germplasm; Inbreeding

Mesh:

Year:  2021        PMID: 34716865     DOI: 10.1007/s11033-021-06748-5

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  6 in total

1.  Genetic diversity of Centella asiatica in China analyzed by inter-simple sequence repeat (ISSR) markers: combination analysis with chemical diversity.

Authors:  Xiao-Gang Zhang; Ting Han; Zhi-Gao He; Qiao-Yan Zhang; Lei Zhang; Khalid Rahman; Lu-Ping Qin
Journal:  J Nat Med       Date:  2011-08-19       Impact factor: 2.343

2.  A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene.

Authors:  M Litt; J A Luty
Journal:  Am J Hum Genet       Date:  1989-03       Impact factor: 11.025

3.  De novo chromosome-level assembly of the Centella asiatica genome.

Authors:  Wirulda Pootakham; Chaiwat Naktang; Wasitthee Kongkachana; Chutima Sonthirod; Thippawan Yoocha; Duangjai Sangsrakru; Nukoon Jomchai; Sonicha U-Thoomporn; Kanokwan Romyanon; Theerayut Toojinda; Sithichoke Tangphatsornruang
Journal:  Genomics       Date:  2021-05-19       Impact factor: 5.736

4.  Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction.

Authors:  Zhian N Kamvar; Javier F Tabima; Niklaus J Grünwald
Journal:  PeerJ       Date:  2014-03-04       Impact factor: 2.984

5.  Genomic inbreeding coefficients based on the distribution of the length of runs of homozygosity in a closed line of Iberian pigs.

Authors:  Luis Gomez-Raya; Carmen Rodríguez; Carmen Barragán; Luis Silió
Journal:  Genet Sel Evol       Date:  2015-10-16       Impact factor: 4.297

6.  Differentiation of Three Centella Species in Australia as Inferred from Morphological Characteristics, ISSR Molecular Fingerprinting and Phytochemical Composition.

Authors:  Ali Alqahtani; Jun-Lae Cho; Ka Ho Wong; Kong M Li; Valentina Razmovski-Naumovski; George Q Li
Journal:  Front Plant Sci       Date:  2017-11-21       Impact factor: 5.753

  6 in total

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