Literature DB >> 34713277

MRI Super-Resolution Through Generative Degradation Learning.

Yao Sui1,2, Onur Afacan1,2, Ali Gholipour1,2, Simon K Warfield1,2.   

Abstract

Spatial resolution plays a critically important role in MRI for the precise delineation of the imaged tissues. Unfortunately, acquisitions with high spatial resolution require increased imaging time, which increases the potential of subject motion, and suffers from reduced signal-to-noise ratio (SNR). Super-resolution reconstruction (SRR) has recently emerged as a technique that allows for a trade-off between high spatial resolution, high SNR, and short scan duration. Deconvolution-based SRR has recently received significant interest due to the convenience of using the image space. The most critical factor to succeed in deconvolution is the accuracy of the estimated blur kernels that characterize how the image was degraded in the acquisition process. Current methods use handcrafted filters, such as Gaussian filters, to approximate the blur kernels, and have achieved promising SRR results. As the image degradation is complex and varies with different sequences and scanners, handcrafted filters, unfortunately, do not necessarily ensure the success of the deconvolution. We sought to develop a technique that enables accurately estimating blur kernels from the image data itself. We designed a deep architecture that utilizes an adversarial scheme with a generative neural network against its degradation counterparts. This design allows for the SRR tailored to an individual subject, as the training requires the scan-specific data only, i.e., it does not require auxiliary datasets of high-quality images, which are practically challenging to obtain. With this technique, we achieved high-quality brain MRI at an isotropic resolution of 0.125 cubic mm with six minutes of imaging time. Extensive experiments on both simulated low-resolution data and clinical data acquired from ten pediatric patients demonstrated that our approach achieved superior SRR results as compared to state-of-the-art deconvolution-based methods, while in parallel, at substantially reduced imaging time in comparison to direct high-resolution acquisitions.

Entities:  

Keywords:  Deep learning; MRI; Super-resolution

Year:  2021        PMID: 34713277      PMCID: PMC8550564          DOI: 10.1007/978-3-030-87231-1_42

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  20 in total

1.  Super-resolution methods in MRI: can they improve the trade-off between resolution, signal-to-noise ratio, and acquisition time?

Authors:  Esben Plenge; Dirk H J Poot; Monique Bernsen; Gyula Kotek; Gavin Houston; Piotr Wielopolski; Louise van der Weerd; Wiro J Niessen; Erik Meijering
Journal:  Magn Reson Med       Date:  2012-02-01       Impact factor: 4.668

2.  Robust super-resolution volume reconstruction from slice acquisitions: application to fetal brain MRI.

Authors:  Ali Gholipour; Judy A Estroff; Simon K Warfield
Journal:  IEEE Trans Med Imaging       Date:  2010-06-07       Impact factor: 10.048

3.  Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions.

Authors:  Benoit Scherrer; Ali Gholipour; Simon K Warfield
Journal:  Med Image Anal       Date:  2012-06-19       Impact factor: 8.545

4.  Super-resolution reconstruction in frequency, image, and wavelet domains to reduce through-plane partial voluming in MRI.

Authors:  Ali Gholipour; Onur Afacan; Iman Aganj; Benoit Scherrer; Sanjay P Prabhu; Mustafa Sahin; Simon K Warfield
Journal:  Med Phys       Date:  2015-12       Impact factor: 4.071

5.  An efficient total variation algorithm for super-resolution in fetal brain MRI with adaptive regularization.

Authors:  Sébastien Tourbier; Xavier Bresson; Patric Hagmann; Jean-Philippe Thiran; Reto Meuli; Meritxell Bach Cuadra
Journal:  Neuroimage       Date:  2015-06-10       Impact factor: 6.556

6.  Channel Splitting Network for Single MR Image Super-Resolution.

Authors:  Xiaole Zhao; Yulun Zhang; Tao Zhang; Xueming Zou
Journal:  IEEE Trans Image Process       Date:  2019-06-14       Impact factor: 10.856

7.  Deep MR Brain Image Super-Resolution Using Spatio-Structural Priors.

Authors:  Venkateswararao Cherukuri; Tiantong Guo; Steven J Schiff; Vishal Monga
Journal:  IEEE Trans Image Process       Date:  2019-09-25       Impact factor: 10.856

8.  Evaluation of motion and its effect on brain magnetic resonance image quality in children.

Authors:  Onur Afacan; Burak Erem; Diona P Roby; Noam Roth; Amir Roth; Sanjay P Prabhu; Simon K Warfield
Journal:  Pediatr Radiol       Date:  2016-08-03

9.  Progressive Sub-Band Residual-Learning Network for MR Image Super Resolution.

Authors:  Xuetong Xue; Ying Wang; Jie Li; Zhicheng Jiao; Ziqi Ren; Xinbo Gao
Journal:  IEEE J Biomed Health Inform       Date:  2019-10-04       Impact factor: 5.772

Review 10.  The WU-Minn Human Connectome Project: an overview.

Authors:  David C Van Essen; Stephen M Smith; Deanna M Barch; Timothy E J Behrens; Essa Yacoub; Kamil Ugurbil
Journal:  Neuroimage       Date:  2013-05-16       Impact factor: 6.556

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  2 in total

1.  Gradient-Guided Isotropic MRI Reconstruction from Anisotropic Acquisitions.

Authors:  Yao Sui; Onur Afacan; Camilo Jaimes; Ali Gholipour; Simon K Warfield
Journal:  IEEE Trans Comput Imaging       Date:  2021-11-17

2.  Addressing Motion Blurs in Brain MRI Scans Using Conditional Adversarial Networks and Simulated Curvilinear Motions.

Authors:  Shangjin Li; Yijun Zhao
Journal:  J Imaging       Date:  2022-03-23
  2 in total

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