Literature DB >> 34709626

Identification of Essential Genes in Caenorhabditis elegans with Lethal Mutations Maintained by Genetic Balancers.

Shicheng Yu1,2,3, Chaoran Zheng3, Jeffrey Shih-Chieh Chu4.   

Abstract

Genetic balancer systems, which allow effective capture and maintenance of lethal mutations stably, play an important role in identifying essential genes. Whole-genome sequencing (WGS) followed by bioinformatics analysis, combined with genetic mapping data analysis, allows for an efficient and economical means of identifying genomic mutations in essential genes. Using this approach, we successfully identified 104 essential genes on ChrI, ChrIII, and ChrV in C. elegans. In this report, we described a protocol that sequences the genome of prebalanced Caenorhabditis elegans (C. elegans) strains to carry lethal mutations and identifies candidate causal mutations and candidate essential genes using a robust bioinformatics procedure.
© 2022. Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Balancer; Duplication; Essential gene; Illumina sequencing; Translocation

Mesh:

Substances:

Year:  2022        PMID: 34709626     DOI: 10.1007/978-1-0716-1720-5_19

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  40 in total

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Authors:  M Han; P W Sternberg
Journal:  Cell       Date:  1990-11-30       Impact factor: 41.582

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Journal:  Cell       Date:  2001-07-13       Impact factor: 41.582

4.  An estimation of minimal genome size required for life.

Authors:  M Itaya
Journal:  FEBS Lett       Date:  1995-04-10       Impact factor: 4.124

5.  Systematic functional analysis of the Caenorhabditis elegans genome using RNAi.

Authors:  Ravi S Kamath; Andrew G Fraser; Yan Dong; Gino Poulin; Richard Durbin; Monica Gotta; Alexander Kanapin; Nathalie Le Bot; Sergio Moreno; Marc Sohrmann; David P Welchman; Peder Zipperlen; Julie Ahringer
Journal:  Nature       Date:  2003-01-16       Impact factor: 49.962

6.  The C. elegans cell death gene ced-3 encodes a protein similar to mammalian interleukin-1 beta-converting enzyme.

Authors:  J Yuan; S Shaham; S Ledoux; H M Ellis; H R Horvitz
Journal:  Cell       Date:  1993-11-19       Impact factor: 41.582

7.  DICER1 mutations in familial pleuropulmonary blastoma.

Authors:  D Ashley Hill; Jennifer Ivanovich; John R Priest; Christina A Gurnett; Louis P Dehner; David Desruisseau; Jason A Jarzembowski; Kathryn A Wikenheiser-Brokamp; Brian K Suarez; Alison J Whelan; Gretchen Williams; Dawn Bracamontes; Yoav Messinger; Paul J Goodfellow
Journal:  Science       Date:  2009-06-25       Impact factor: 47.728

8.  OrthoList: a compendium of C. elegans genes with human orthologs.

Authors:  Daniel D Shaye; Iva Greenwald
Journal:  PLoS One       Date:  2011-05-25       Impact factor: 3.240

9.  The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio.

Authors:  P Haffter; M Granato; M Brand; M C Mullins; M Hammerschmidt; D A Kane; J Odenthal; F J van Eeden; Y J Jiang; C P Heisenberg; R N Kelsh; M Furutani-Seiki; E Vogelsang; D Beuchle; U Schach; C Fabian; C Nüsslein-Volhard
Journal:  Development       Date:  1996-12       Impact factor: 6.868

10.  High-throughput capturing and characterization of mutations in essential genes of Caenorhabditis elegans.

Authors:  Jeffrey Shih-Chieh Chu; Shu-Yi Chua; Kathy Wong; Ann Marie Davison; Robert Johnsen; David L Baillie; Ann M Rose
Journal:  BMC Genomics       Date:  2014-05-12       Impact factor: 3.969

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  1 in total

1.  Data Incompleteness May form a Hard-to-Overcome Barrier to Decoding Life's Mechanism.

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Journal:  Biology (Basel)       Date:  2022-08-12
  1 in total

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