Literature DB >> 22341449

The majority of animal genes are required for wild-type fitness.

Arun K Ramani1, Tungalag Chuluunbaatar, Adrian J Verster, Hong Na, Victoria Vu, Nadège Pelte, Nattha Wannissorn, Alan Jiao, Andrew G Fraser.   

Abstract

Almost all eukaryotic genes are conserved, suggesting that they have essential functions. However, only a minority of genes have detectable loss-of-function phenotypes in experimental assays, and multiple theories have been proposed to explain this discrepancy. Here, we use RNA-mediated interference in C. elegans to examine how knockdown of any gene affects the overall fitness of worm populations. Whereas previous studies typically assess phenotypes that are detectable by eye after a single generation, we monitored growth quantitatively over several generations. In contrast to previous estimates, we find that, in these multigeneration population assays, the majority of genes affect fitness, and this suggests that genetic networks are not robust to mutation. Our results demonstrate that, in a single environmental condition, most animal genes play essential roles. This is a higher proportion than for yeast genes, and we suggest that the source of negative selection is different in animals and in unicellular eukaryotes. Copyright Â
© 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22341449     DOI: 10.1016/j.cell.2012.01.019

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  26 in total

Review 1.  Mainstreaming Caenorhabditis elegans in experimental evolution.

Authors:  Jeremy C Gray; Asher D Cutter
Journal:  Proc Biol Sci       Date:  2014-01-15       Impact factor: 5.349

2.  The genotype-phenotype map of yeast complex traits: basic parameters and the role of natural selection.

Authors:  Wei-Chin Ho; Jianzhi Zhang
Journal:  Mol Biol Evol       Date:  2014-04-09       Impact factor: 16.240

3.  Novel Metrics to Characterize Embryonic Elongation of the Nematode Caenorhabditis elegans.

Authors:  Emmanuel Martin; Olivier Rocheleau-Leclair; Sarah Jenna
Journal:  J Vis Exp       Date:  2016-03-28       Impact factor: 1.355

Review 4.  Emerging and evolving concepts in gene essentiality.

Authors:  Giulia Rancati; Jason Moffat; Athanasios Typas; Norman Pavelka
Journal:  Nat Rev Genet       Date:  2017-10-16       Impact factor: 53.242

5.  A High-Resolution Genome-Wide CRISPR/Cas9 Viability Screen Reveals Structural Features and Contextual Diversity of the Human Cell-Essential Proteome.

Authors:  Thierry Bertomeu; Jasmin Coulombe-Huntington; Andrew Chatr-Aryamontri; Karine G Bourdages; Etienne Coyaud; Brian Raught; Yu Xia; Mike Tyers
Journal:  Mol Cell Biol       Date:  2017-12-13       Impact factor: 4.272

6.  Multi-endpoint, high-throughput study of nanomaterial toxicity in Caenorhabditis elegans.

Authors:  Sang-Kyu Jung; Xiaolei Qu; Boanerges Aleman-Meza; Tianxiao Wang; Celeste Riepe; Zheng Liu; Qilin Li; Weiwei Zhong
Journal:  Environ Sci Technol       Date:  2015-02-06       Impact factor: 9.028

7.  Identification of Essential Genes in Caenorhabditis elegans with Lethal Mutations Maintained by Genetic Balancers.

Authors:  Shicheng Yu; Chaoran Zheng; Jeffrey Shih-Chieh Chu
Journal:  Methods Mol Biol       Date:  2022

8.  Pleiotropic constraints, expression level, and the evolution of miRNA sequences.

Authors:  Richard Jovelin
Journal:  J Mol Evol       Date:  2013-10-08       Impact factor: 2.395

9.  The details in the distributions: why and how to study phenotypic variability.

Authors:  K A Geiler-Samerotte; C R Bauer; S Li; N Ziv; D Gresham; M L Siegal
Journal:  Curr Opin Biotechnol       Date:  2013-04-06       Impact factor: 9.740

10.  A database of Caenorhabditis elegans behavioral phenotypes.

Authors:  Eviatar Yemini; Tadas Jucikas; Laura J Grundy; André E X Brown; William R Schafer
Journal:  Nat Methods       Date:  2013-07-14       Impact factor: 28.547

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