Literature DB >> 34709613

A Simple Method that Combines CRISPR and AID to Quickly Generate Conditional Knockouts for Essential Genes in Various Vertebrate Cell Lines.

Kohei Nishimura1,2, Tatsuo Fukagawa3.   

Abstract

Cells with a loss-of-function mutation in a gene (knockout cells) are powerful tools for characterizing the function of such gene product. However, for essential genes, conditional knockout cell lines must be generated. The auxin-inducible degron (AID) technique enables us to conditionally and rapidly deplete a target protein from various eukaryotic cell lines. A combination of CRISPR-/Cas9-based gene editing and AID technique allows us to generate AID-based conditional knockout cell lines. Using these two techniques, we recently proposed a simple and quick way to generate conditional knockout cells for essential genes. In this chapter, we introduce the reader to the experimental procedures to generate these AID-based conditional knockout cell lines.
© 2022. Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Auxin-Inducible Degron (AID); CRISPR/Cas9; Conditional knockout; Essential genes

Mesh:

Substances:

Year:  2022        PMID: 34709613     DOI: 10.1007/978-1-0716-1720-5_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  14 in total

1.  CENP-H, a constitutive centromere component, is required for centromere targeting of CENP-C in vertebrate cells.

Authors:  T Fukagawa; Y Mikami; A Nishihashi; V Regnier; T Haraguchi; Y Hiraoka; N Sugata; K Todokoro; W Brown; T Ikemura
Journal:  EMBO J       Date:  2001-08-15       Impact factor: 11.598

2.  Efficient in vivo manipulation of mouse genomic sequences at the zygote stage.

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Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-11       Impact factor: 11.205

3.  An auxin-based degron system for the rapid depletion of proteins in nonplant cells.

Authors:  Kohei Nishimura; Tatsuo Fukagawa; Haruhiko Takisawa; Tatsuo Kakimoto; Masato Kanemaki
Journal:  Nat Methods       Date:  2009-11-15       Impact factor: 28.547

4.  Genome-scale CRISPR-Cas9 knockout screening in human cells.

Authors:  Ophir Shalem; Neville E Sanjana; Ella Hartenian; Xi Shi; David A Scott; Tarjei Mikkelson; Dirk Heckl; Benjamin L Ebert; David E Root; John G Doench; Feng Zhang
Journal:  Science       Date:  2013-12-12       Impact factor: 47.728

5.  Genetic screens in human cells using the CRISPR-Cas9 system.

Authors:  Tim Wang; Jenny J Wei; David M Sabatini; Eric S Lander
Journal:  Science       Date:  2013-12-12       Impact factor: 47.728

Review 6.  Inducible gene expression systems for higher eukaryotic cells.

Authors:  M Gossen; A L Bonin; S Freundlieb; H Bujard
Journal:  Curr Opin Biotechnol       Date:  1994-10       Impact factor: 9.740

7.  Rad51-deficient vertebrate cells accumulate chromosomal breaks prior to cell death.

Authors:  E Sonoda; M S Sasaki; J M Buerstedde; O Bezzubova; A Shinohara; H Ogawa; M Takata; Y Yamaguchi-Iwai; S Takeda
Journal:  EMBO J       Date:  1998-01-15       Impact factor: 11.598

8.  Multiplex genome engineering using CRISPR/Cas systems.

Authors:  Le Cong; F Ann Ran; David Cox; Shuailiang Lin; Robert Barretto; Naomi Habib; Patrick D Hsu; Xuebing Wu; Wenyan Jiang; Luciano A Marraffini; Feng Zhang
Journal:  Science       Date:  2013-01-03       Impact factor: 47.728

9.  RNA-guided human genome engineering via Cas9.

Authors:  Prashant Mali; Luhan Yang; Kevin M Esvelt; John Aach; Marc Guell; James E DiCarlo; Julie E Norville; George M Church
Journal:  Science       Date:  2013-01-03       Impact factor: 47.728

10.  Deletion of a DNA polymerase beta gene segment in T cells using cell type-specific gene targeting.

Authors:  H Gu; J D Marth; P C Orban; H Mossmann; K Rajewsky
Journal:  Science       Date:  1994-07-01       Impact factor: 47.728

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