Literature DB >> 34704282

Relevance of HLA gene polymorphisms in Romanian patients with chronic renal insufficiency undergoing renal transplantation.

Ion Mărunţelu1,2, Bogdan Mihai Cristea1, Secil Omer2, Carmen Monica Preda1, Ileana Constantinescu1,2.   

Abstract

BACKGROUND: Chronic renal insufficiency (CRI) is a global public health problem with a high incidence in the Romanian population. In this study, we aimed to investigate genomic HLA polymorphisms in Romanian patients with CRI waiting for kidney transplantation. To determine the existence of a potential strong link between certain HLA polymorphisms and CRI, we also looked at HLA specificity combinations within the same locus or even different loci, referring to randomly inherited allelic combinations rather than potential haplotypes.
METHODS: A total of 2199 patients with CRI on the kidney transplantation waiting list were included. A total of 2786 healthy individuals were included as controls. Both patients and controls were assessed for both HLA I and class II genes. HLA genes were typed using the low-resolution method polymerase chain reaction sequence-specific primer.
RESULTS: Certain class I and class II HLA allele groups, genotypes and haplotypes were significantly more frequent in patients with CRI than in the control individuals (eg B* 40 (p ≤ .001, pc ≤ .001), C* 12 (p ≤ .001, pc ≤ .001), DRB1*14 (p = .0022, pc = .04), C*12,- (p < .001, pc < .001), A*01-C*15 (p = .0003, pc = .03) and A*02-C*12 (p = .0005, pc = .0486)).
CONCLUSIONS: HLA gene polymorphisms could be clinically relevant CRI-associated genetic profiles in Romanian patients with CRI.
© 2021 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC.

Entities:  

Keywords:  CRI; combined HLA types; disease-associated HLA genes; haplotypes; polymorphisms

Mesh:

Substances:

Year:  2021        PMID: 34704282      PMCID: PMC8649334          DOI: 10.1002/jcla.24075

Source DB:  PubMed          Journal:  J Clin Lab Anal        ISSN: 0887-8013            Impact factor:   2.352


INTRODUCTION

Over the last few decades, an impressive number of studies have established strong associations between certain diseases and individuals carrying particular HLA alleles. Although these studies have proven a strong association between HLA and certain diseases (eg ankylosing spondylitis, type 1 diabetes and narcolepsy), the effector mechanisms underlying HLA‐disease associations remain unclear. HLA associations with certain diseases can be determined by the linkage disequilibrium between genes within the major histocompatibility complex (MHC; eg in the case of hereditary haemochromatosis or congenital adrenal hyperplasia) or by the presence of anomalies in the MHC and non‐MHC receptor interaction‐activated pathways. HLA polymorphisms in the healthy Romanian population are well known. Moreover, certain HLA genes have been associated with susceptibility to infections, such as hepatitis C in Romania. Finally, the immune system (eg HLA) reportedly plays a role in the occurrence and progression of renal disease. , , , , Chronic renal insufficiency (CRI) is a complex and multifactorial disease that represents the final stage of chronic renal failure progression, revealed by reduced glomerular filtration below 15 mL/min/1.73 m2 with a duration of more than 3 months, leading to permanent dialysis or a need for kidney transplantation. . CRI incidence has increased markedly over the past few decades. Kidney transplantation is the most efficient treatment for patients with CRI. The global number of patients with CRI exceeds the number of renal transplantation procedures per year. Therefore, CRI incidence is almost 400 persons per million in the USA and other countries. In the Romanian population, CRI is a serious public health problem. According to the National Transplant Agency, 4792 Romanian patients with CRI were registered on the waiting list for kidney transplantation procedures at the end of 2020. Therefore, we aimed to investigate certain HLA genomic polymorphisms that might be associated with the development of CRI in Romanian patients waiting for kidney transplantation. We also looked at HLA specificity combinations within the same locus or even different loci, referring to randomly inherited allelic combinations.

MATERIALS AND METHODS

Patients

A total of 2199 patients with CRI, admitted between 2012 and 2019 to the Fundeni Clinical Institute, Romania, and who underwent kidney transplantation, were included in this study. All patients had a glomerular filtration rate below 15 mL/min at the time of inclusion in the study. At the same time, 2786 healthy donors from the Romanian Marrow Donor Registry were included as controls. To avoid bias, only one member from each family was included in the study. Our research was undertaken in compliance with the approval of the Ethics Committee of the Fundeni Clinical Institute. Informed consent was obtained from all participants included in the study.

HLA genotyping

Genomic DNA was extracted from the peripheral blood. DNA was isolated using the QIAamp® DNA Blood Mini Kit (Qiagen), according to the manufacturer's instructions. HLA class I (HLA‐A, ‐B, and ‐C) and HLA class II (HLA‐DRB1, ‐DQB1, and ‐DPB1) genotyping were performed by the PCR sequence‐specific primer low‐resolution method using HLA‐Ready Gene kits (Innotrain Diagnostik GmbH).

Statistical analysis

The HLA‐A, ‐B, ‐C, ‐DRB1, ‐DQB1 and ‐DPB1 allele and genotype frequencies were determined in patients with CRI and controls by direct counting using the Microsoft Excel software from the Office 365 package (Microsoft). The estimation‐maximisation algorithm of the Arlequin software 3.5 (Swiss Institute of Bioinformatics) was used to estimate the HLA haplotype frequencies. We used cross‐tabulation (using χ 2 test) or Fisher's test in SPSS version 21.0 (IBM) to calculate the differences in allele, genotype and haplotype percentages between patients with CRI and controls. The χ 2 test was used when the expected value was higher than 5, and Fisher’s test was used when the expected value was less than 5. Odds ratios with 95% confidence intervals (95% CI) were calculated to establish the strength of each studied allele, genotype or haplotype association with CRI. The statistical significance was set at p < .05. To avoid the risk of false‐positive allele, genotype or haplotype association identifications, all the obtained significant probability values were corrected for multiple testing using the Bonferroni correction formula.

RESULTS

The HLA results for both patients and controls were obtained from our HLA tissue typing database at the Fundeni Centre for Immunogenetics and Virology. Data were available as per the typed HLA loci: 2199/2786, 2181/2689, 1062/1710, 2188/2625, 1283/1024 and 516/227 for HLA‐A, HLA‐B, HLA‐C, HLA‐DRB1, HLA‐DQB1 and HLA‐DPB1, respectively. Of all the patients enrolled in the study, 59.07% and 40.93% were 4–85‐year‐old men and women, respectively. The distributions of donors and patients by age groups and sex are shown in Table 1. No significant difference could be observed between the patients and controls when analysing age distribution and sex.
TABLE 1

Characteristics of patients and control individuals

CategorySubcategoryPatientsControls
21992786
GenderFemale9001119
40.93%40.17%
Male14021667
59.07%59.83%
Age04–171612
0.73%0.44%
18–25288410
13.10%14.71%
26–358171105
37.14%39.67%
36–45754899
34.62%32.26%
46–55306352
13.96%12.62%
>55108
0.45%0.3%
Characteristics of patients and control individuals The frequencies of HLA allele groups, genotypes and haplotypes in both CRI patients and healthy controls were investigated to detect strong HLA gene polymorphisms that could be associated with CRI in the Romanian population.

Frequency of HLA allele groups in Romanian patients with CRI

Table 2 presents the allele groups in patients with CRI compared with the control. In each group, we identified 19, 29, 13, 15, 5 and 12 alleles from loci A, B, C, DRB1, DQB1 and DPB1, respectively.
TABLE 2

Allele types in CRI patients in comparison with control group individuals

Allele groupPatients (%)Controls (%)Odds ratio95% CI P‐value Pc‐value
Lower LimitUpper Limit
A*0112.4812.650.98420.87351.1089.8078
A*0229.4529.720.98730.90541.0767.7740
A*0310.1110.390.97030.85161.1054.6659
A*119.648.871.09620.95661.2562.1968
A*232.022.760.72630.55780.9458.0184.3501
A*2413.2311.761.14431.01551.2894.0276.5249
A*252.343.160.73490.57440.9403.0144.2734
A*264.954.271.16830.96791.4101.1111
A*291.481.560.94530.68381.3068.7429
A*301.912.490.76070.57851.0003.0560
A*312.201.971.11930.84941.4750.4370
A*324.844.061.20340.99361.4573.0617
A*331.732.050.84150.62781.1280.2687
A*340.090.091.01310.27193.77511.0000
A*360.070.290.23690.06900.8136.0182.3463
A*660.570.561.02140.60221.73241.0000
A*682.702.371.14560.89131.4724.3032
A*690.160.750.20980.09420.4675.0000.0003
A*740.020.230.09720.01270.7434.0052
B*074.464.650.95610.78951.1579.6611
B*086.796.840.99200.84681.1622.9357
B*132.933.950.73330.58670.9164.0065.2030
B*142.062.390.85740.65311.1257.2725
B*153.293.261.00930.80681.2626.9545
B*1810.0611.550.85650.75280.9746.0187.5793
B*274.534.910.91770.76001.1081.3889
B*3516.0714.871.09650.98211.2242.1022
B*371.281.021.25890.86591.8303.2495
B*383.933.361.17890.95311.4582.1410
B*392.722.451.11490.86741.4330.4038
B*407.044.911.46611.23781.7366.0000.0003
B*412.561.911.34991.02991.7694.0315
B*420.050.070.61640.11283.3671.6975
B*447.548.450.88370.76241.0242.1077
B*450.320.330.95900.47641.93041.0000
B*460.110.170.68470.22932.0447.5964
B*470.500.690.73190.43111.2425.2937
B*480.110.150.77050.25192.3569.7832
B*491.941.911.01800.76171.3606.9410
B*501.211.760.68420.48770.9597.0301.9333
B*5110.049.401.07540.94001.2302.3021
B*524.443.781.18080.96601.4432.1106
B*530.210.460.44280.20650.9496.0373
B*540.090.090.98650.26483.67621.0000
B*551.781.970.90580.67431.2167.5496
B*561.101.021.07710.72981.5896.7653
B*571.371.710.80150.57761.1124.1895
B*581.231.540.79980.56651.1294.2259
B*730.210.191.11010.45072.7344.8219
B*780.020.240.09470.01240.7239.0050.1563
C*015.135.610.90950.71431.1580.4647
C*027.588.830.84680.69371.0337.1100
C*035.937.160.81720.65451.0204.0770
C*0416.6217.130.96400.83401.1141.6322
C*052.503.600.68600.49480.9510.0224.2918
C*067.5811.080.65810.54260.7981.0000.0002
C*0721.8924.150.88020.77351.0017.0539
C*082.733.040.89510.64621.2399.5660
C*1217.3310.991.69661.45261.9816.0000.0000
C*142.121.551.37510.92082.0535.1418
C*157.584.361.80051.43102.2655.0000.0000
C*161.791.641.09430.72221.6581.6700
C*171.220.851.44910.85112.4672.2091
DRB1*017.799.010.85310.73760.9866.0329.4275
DRB1*0312.2910.631.17811.03871.3361.0109.1419
DRB1*049.488.021.20121.04221.3843.0121.1576
DRB1*077.088.590.81090.69760.9426.0063.0820
DRB1*081.511.600.94130.68021.3027.7415
DRB1*090.690.531.28680.76762.1571.3566
DRB1*101.991.431.39901.02461.9102.0383.4984
DRB1*1120.4720.800.97980.88731.0819.7045
DRB1*121.761.830.96120.71021.3008.8176
DRB1*139.5010.670.87940.76931.0052.0622
DRB1*147.405.851.28681.09491.5124.0025.0327
DRB1*159.308.951.04240.90691.1981.5694
DRB1*1610.7612.100.87610.77200.9944.0432.5610
DQB1*0219.6318.021.11110.95731.2895.1733
DQB1*0333.9234.380.97990.86691.1075.7548
DQB1*041.911.861.02890.67091.5781.9138
DQB1*0530.0628.521.07760.94831.2244.2552
DQB1*0614.4917.240.81340.69400.9534.0116
DPB1*018.917.051.29070.84951.9611.2629
DPB1*0225.3918.501.49881.13811.9737.0041.0412
DPB1*036.208.590.70350.46481.0648.0973
DPB1*0447.2951.980.82860.66431.0336.1023
DPB1*051.362.420.55380.24951.2296.1867
DPB1*091.261.101.14560.40603.23281.0000
DPB1*102.133.740.55990.29441.0649.0795
DPB1*132.712.860.94610.48541.8438.8645
DPB1*142.522.640.95200.47601.9038.8601
DPB1*172.231.102.04700.77335.4188.2122

All the bold values are less than .05, thus the alleles and combined HLA types with this values are significantly associated with the risk of developing the disease.

Allele types in CRI patients in comparison with control group individuals All the bold values are less than .05, thus the alleles and combined HLA types with this values are significantly associated with the risk of developing the disease. After applying the Bonferroni correction, we found that certain HLA allele groups were associated with CRI in our group of patients (see Table 2): HLA‐B*40 (OR = 1.4661, p ≤ .001, pc ≤ 001), HLA‐C*12 (OR = 1.6966, p ≤ .001, pc ≤ .001), HLA‐C*15 (OR = 1.8005, p ≤ .001, pc ≤ .001), HLA‐DRB1*14 (OR = 1.2868, p = .002, pc = .04) and HLA‐DPB1*02 (OR = 1.498, p = .004, pc = .048).

Analysis of combined HLA types associated with CRI

We also studied the possible association of HLA allele heterozygosity or homozygosity with the disease at different loci. Our study revealed a few allele combinations that remained or were not significantly and positively associated with CRI after the Bonferroni correction (see Table 3): A*01,11 (OR = 1.73, p = .004, pc = .2437), A*03,32 (OR = 2.33, p = .003, pc = .2121), C*12,‐ (OR = 2.51, p < .001, pc < .001), DRB1*04,‐ (OR = 2.242; p = .006, pc = .7002), DRB1*04,14 (OR = 2.44; p = .004, pc = .3596) and DRB1*14,‐ (OR = 2.191; p = .007, pc = .042).
TABLE 3

Combined HLA types in both CRI patients and control individuals

Combined HLA typesPatientsControls95% CI P‐value Pc‐value
Odds ratioLower LimitUpper Limit
A*01,‐1.642.370.68590.45521.0336.0863
A*01,027.147.500.94800.76461.1754.6618
A*01,032.182.660.81780.56621.1812.3103
A*01,113.141.791.72661.22642.5622.0026.2437
A*01,230.500.431.16220.51182.6389.8340
A*01,243.052.581.18460.84531.6601.3412
A*01,250.640.830.76970.39511.4993.5080
A*01,261.141.011.13270.65861.9481.6781
A*01,290.270.500.54170.20781.4120.2609
A*01,300.820.541.52460.76663.0321.2911
A*01,310.550.541.01360.47352.17001.0000
A*01,320.951.040.91660.52131.6118.8864
A*01,330.450.431.05600.45542.44881.0000
A*01,660.230.141.58500.42515.9096.5198
A*01,680.590.571.02960.49422.14501.0000
A*02,‐8.969.300.96010.79051.1660.6925
A*02,035.685.491.03720.81331.3228.8037
A*02,115.415.780.93280.73101.1904.6203
A*02,231.411.830.76680.48901.2025.2636
A*02,247.596.681.14880.92491.4270.2213
A*02,251.591.441.11030.70291.7538.7255
A*02,263.182.371.35500.96351.9057.0807
A*02,291.090.901.21860.69412.1397.5636
A*02,301.141.400.81000.48871.3425.4488
A*02,311.321.400.94130.58021.5271.9023
A*02,322.502.840.87900.62021.2459.4819
A*02,330.911.010.90410.50791.6092.7719
A*02,660.180.390.45970.14621.4458.2014
A*02,681.591.111.43740.88352.3385.1695
A*02,690.180.390.45970.14621.4458.2014
A*03,‐1.271.081.18480.70581.9891.5951
A*03,111.362.120.63930.41040.9957.0522
A*03,230.410.540.75920.33161.7381.5446
A*03,242.862.581.11180.78911.5664.5982
A*03,250.270.830.32870.13360.8086.0134
A*03,261.271.041.22610.72732.0672.5028
A*03,290.320.251.26780.44403.6199.7891
A*03,300.270.720.37840.15170.9438.0306
A*03,310.500.251.99590.77245.1572.1599
A*03,321.590.682.32541.34364.1291.0023.2121
A*03,330.270.540.50540.19581.3048.1880
A*03,680.410.500.81370.35151.8835.6792
A*11,‐1.050.931.12200.63841.9719.7728
A*11,230.360.321.12660.43402.9249.8118
A*11,242.592.151.20900.83771.7449.3462
A*11,250.320.570.55290.22701.3462.2116
A*11,260.820.751.08670.57762.0445.8718
A*11,290.270.181.52180.46384.9929.5516
A*11,300.320.221.47960.49654.4091.5796
A*11,310.550.291.90530.77754.6694.1782
A*11,321.000.611.64600.87193.1074.1449
A*11,330.360.221.69180.58614.8831.4209
A*11,660.230.112.11410.50478.8561.3130
A*11,680.360.390.92110.36992.29401.0000
A*23,240.640.860.73740.38051.4288.4146
A*23,260.050.180.25300.02952.1676.2379
A*23,320.050.180.25300.02952.1676.2379
A*23,680.090.250.36140.07501.7415.3144
A*24,‐1.821.621.12850.73441.7342.5838
A*24,250.500.720.69530.33241.4542.3688
A*24,261.641.151.43240.88682.3137.1423
A*24,290.090.390.22970.05081.0372.0481
A*24,300.640.501.26860.60352.6668.5702
A*24,310.360.291.26790.47513.3837.8019
A*24,321.180.971.22260.71142.1012.4890
A*24,330.590.471.26850.58692.7420.5586
A*24,660.270.141.90290.53636.7516.3523
A*24,680.770.571.34880.67992.6757.4823
A*25,‐0.140.180.75980.18143.18301.0000
A*25,260.230.221.05590.32183.46451.0000
A*25,300.050.220.21080.02541.7523.1429
A*25,310.230.046.34690.740954.3672.0937
A*25,320.230.320.70320.23532.1012.5989
A*25,330.050.220.21080.02541.7523.1429
A*25,680.140.220.63300.15812.5338.7396
A*26,‐0.230.221.05590.32183.46451.0000
A*26,290.140.220.63300.15812.5338.7396
A*26,310.230.141.58500.42515.9096.5198
A*26,320.410.430.95000.39962.25871.0000
A*26,330.050.180.25300.02952.1676.2379
A*30,‐0.050.180.25300.02952.1676.2379
A*30,320.180.181.01360.27183.77911.0000
A*30,680.050.220.21080.02541.7523.1429
A*31,‐0.050.220.21080.02541.7523.1429
A*31,320.320.074.44530.922521.4201.0495
A*32,‐0.270.141.90290.53636.7516.3523
A*32,330.180.181.01360.27183.77911.0000
A*32,680.320.142.22100.64937.5969.2312
A*33,680.230.221.05590.32183.46451.0000
B*07,‐0.270.560.49230.19071.2710.1864
B*07,080.690.481.42700.67763.0055.3493
B*07,130.180.300.61640.18542.0498.5651
B*07,140.180.260.70470.20602.4105.7639
B*07,150.320.330.95980.35692.58141.0000
B*07,180.820.960.85330.46661.5604.6502
B*07,270.230.221.02860.31353.37491.0000
B*07,351.331.560.85020.52791.3694.5489
B*07,380.320.301.08020.39112.98351.0000
B*07,390.270.261.05810.35513.15301.0000
B*07,400.590.262.29980.91605.7744.0748
B*07,410.320.261.23500.43253.5262.7903
B*07,440.591.070.55060.28551.0617.0859
B*07,490.140.260.52830.13652.0455.5272
B*07,500.230.046.18290.721852.9638.0958
B*07,510.730.671.09780.55852.1579.8631
B*07,520.270.261.05810.35513.15301.0000
B*07,550.230.191.23480.35704.2707.7603
B*07,560.230.151.54400.41415.7569.5255
B*07,570.090.190.49320.09562.5447.4706
B*08,‐0.370.410.89720.36032.23461.0000
B*08,130.410.480.85390.36432.0013.8311
B*08,140.140.370.36940.10151.3439.1628
B*08,150.590.561.07010.50812.2537.8517
B*08,181.331.780.74230.46651.1811.2479
B*08,270.641.040.61460.32281.1704.1609
B*08,351.922.220.86130.57821.2829.4827
B*08,370.320.261.23500.43253.5262.7903
B*08,380.320.301.08020.39112.98351.0000
B*08,390.690.332.06430.90164.7263.0993
B*08,400.690.521.32460.63802.7502.4603
B*08,410.640.115.79041.661920.1750.0023.3838
B*08,440.731.070.67860.36761.2527.2310
B*08,470.140.190.74020.17673.1007.7382
B*08,490.370.221.64800.57094.7569.4238
B*08,500.270.330.82230.29222.3139.7989
B*08,511.281.330.95940.58361.5773.9000
B*08,520.500.411.23540.53462.8549.6708
B*08,550.410.221.85480.65925.2193.3002
B*08,570.180.190.98740.26483.68141.0000
B*08,580.270.300.92550.32062.67131.0000
B*13,‐0.140.330.41060.11101.5185.2461
B*13,150.270.047.42290.893061.7053.0502
B*13,180.551.000.54600.27601.0804.1048
B*13,270.180.260.70470.20602.4105.7639
B*13,351.011.001.00570.57121.77091.0000
B*13,380.050.410.11180.01440.8666.0161
B*13,390.270.112.47250.61769.8977.3146
B*13,400.320.221.44130.48374.2951.5824
B*13,440.550.890.61500.30681.2326.1817
B*13,490.140.300.46210.12241.7439.3646
B*13,510.590.700.84350.41571.7119.7228
B*13,520.230.260.88130.27932.78071.0000
B*14,150.140.220.61660.15402.4683.7396
B*14,180.500.700.71310.33861.5017.4623
B*14,270.180.260.70470.20602.4105.7639
B*14,350.690.700.97420.49391.92171.0000
B*14,380.090.190.49320.09562.5447.4706
B*14,400.320.191.73020.54845.4592.3927
B*14,440.230.191.23480.35704.2707.7603
B*14,510.180.410.44780.14241.4083.1977
B*14,520.230.191.23480.35704.2707.7603
B*14,550.230.073.09030.599015.9443.2542
B*15,‐0.090.190.49320.09562.5447.4706
B*15,180.460.930.49140.23551.0253.0606
B*15,270.320.330.95980.35692.58141.0000
B*15,351.010.821.23660.68302.2390.5433
B*15,380.410.113.71381.004213.7350.0427
B*15,400.230.370.61620.21031.8056.4430
B*15,410.230.112.05950.49168.6273.4797
B*15,440.640.411.57450.71333.4753.3143
B*15,490.180.151.23460.30844.94251.0000
B*15,500.050.300.15390.01921.2314.0483
B*15,510.730.591.23590.61672.4771.5951
B*15,520.230.151.54400.41415.7569.5255
B*18,‐1.191.450.82070.49801.3524.4543
B*18,271.051.041.01400.58241.76531.0000
B*18,353.113.560.87020.63451.1935.4246
B*18,370.230.221.02860.31353.37491.0000
B*18,380.910.930.98730.54691.78231.0000
B*18,390.460.411.12260.47592.6482.8285
B*18,401.330.931.43750.83942.4616.2155
B*18,410.410.411.00990.41772.44141.0000
B*18,441.651.740.94440.60961.4632.8246
B*18,490.550.331.64920.69363.9212.2773
B*18,500.180.190.98740.26483.68141.0000
B*18,512.102.450.85720.58581.2544.4434
B*18,520.640.670.95970.47621.93401.0000
B*18,550.370.700.51790.22631.1854.1240
B*18,560.270.073.71010.748118.4006.1508
B*18,570.370.410.89720.36032.23461.0000
B*18,580.180.300.61640.18542.0498.5651
B*27,‐0.140.370.36940.10151.3439.1628
B*27,351.601.561.02900.65471.6173.9085
B*27,380.410.520.79260.34241.8346.6769
B*27,390.320.191.73020.54845.4592.3927
B*27,400.730.332.20300.97164.9950.0682
B*27,410.180.190.98740.26483.68141.0000
B*27,440.500.740.67720.32381.4164.3661
B*27,490.270.112.47250.61769.8977.3146
B*27,511.101.110.98720.57541.69371.0000
B*27,520.460.331.37310.55693.3851.4986
B*27,550.090.260.35200.07311.6964.2008
B*35,‐2.842.451.16410.81921.6541.4182
B*35,370.550.153.71761.197311.5431.0210
B*35,381.421.111.27930.77192.1202.3657
B*35,391.010.741.36130.74102.5008.3515
B*35,402.421.671.46490.98062.1884.0650
B*35,410.910.442.06681.00814.2373.0497
B*35,442.292.151.06550.72681.5620.7696
B*35,490.550.560.98730.46122.11371.0000
B*35,500.370.700.51790.22631.1854.1240
B*35,512.742.191.26230.87731.8164.2254
B*35,521.421.111.27930.77192.1202.3657
B*35,530.090.190.49320.09562.5447.4706
B*35,550.500.630.79760.37281.7064.7038
B*35,560.410.411.00990.41772.44141.0000
B*35,570.410.560.73950.32301.6930.5411
B*35,580.410.480.85390.36432.0013.8311
B*37,400.230.151.54400.41415.7569.5255
B*37,440.230.330.68500.22922.0468.5962
B*37,510.270.410.67230.24821.8209.4745
B*38,‐0.320.191.73020.54845.4592.3927
B*38,390.230.112.05950.49168.6273.4797
B*38,400.590.331.78740.76264.1895.2005
B*38,410.090.370.24620.05391.1246.0775
B*38,440.780.561.40190.69852.8136.3752
B*38,510.640.302.16740.90755.1760.0867
B*38,580.090.220.41090.08282.0377.3101
B*39,400.090.370.24620.05391.1246.0775
B*39,440.500.411.23540.53462.8549.6708
B*39,510.550.441.23550.55402.7556.6825
B*39,520.140.260.52830.13652.0455.5272
B*40,‐0.910.372.48201.15935.3136.0169
B*40,410.410.301.39010.53543.6090.6266
B*40,440.870.701.23630.65292.3409.5177
B*40,500.090.220.41090.08282.0377.3101
B*40,511.280.931.38730.80662.3861.2670
B*40,521.050.821.29340.71892.3269.4520
B*40,570.230.073.09030.599015.9443.2542
B*40,580.090.220.41090.08282.0377.3101
B*41,440.320.301.08020.39112.98351.0000
B*41,510.460.153.09510.96949.8824.0584
B*41,520.320.152.16360.63257.4007.2364
B*44,‐0.551.000.54600.27601.0804.1048
B*44,490.550.521.05820.48842.29271.0000
B*44,500.140.300.46210.12241.7439.3646
B*44,512.201.631.35420.89602.0467.1688
B*44,520.320.440.71910.28261.8295.6451
B*44,550.180.300.61640.18542.0498.5651
B*44,570.090.220.41090.08282.0377.3101
B*44,580.320.301.08020.39112.98351.0000
B*49,510.460.301.54530.60883.9221.4773
B*49,520.140.260.52830.13652.0455.5272
B*50,510.180.300.61640.18542.0498.5651
B*50,520.230.073.09030.599015.9443.2542
B*51,‐1.241.260.97990.58931.62921.0000
B*51,520.640.561.15290.55532.3937.7122
B*51,550.270.261.05810.35513.15301.0000
B*51,560.230.151.54400.41415.7569.5255
B*51,570.180.440.41030.13221.2741.1344
B*51,580.230.260.88130.27932.78071.0000
B*51,780.050.190.24650.02882.1115.2339
B*52,‐0.690.481.42700.67763.0055.3493
B*57,‐0.230.221.02860.31353.37491.0000
C*01,‐0.470.880.53450.19371.4750.2556
C*01,020.470.640.73060.25312.1087.6176
C*01,030.850.531.61540.63924.0825.3359
C*01,041.601.870.85310.47131.5440.6584
C*01,060.750.701.07400.43762.63611.0000
C*01,072.173.330.64200.39311.0483.0804
C*01,080.560.183.23300.806812.9546.0942
C*01,121.320.881.50950.72573.1400.3369
C*01,140.190.290.64340.12463.3223.7146
C*01,150.850.581.45300.58853.5875.4797
C*02,‐0.562.220.25000.10530.5934.0005
C*02,030.850.761.11570.47532.6192.8278
C*02,042.542.690.94370.58311.5273.9030
C*02,050.380.700.53500.17211.6631.3145
C*02,061.321.700.77430.40731.4722.5278
C*02,072.823.160.89150.56671.4024.6502
C*02,080.280.580.48160.13221.7539.3924
C*02,123.391.931.78311.10482.8779.0233
C*02,140.560.232.42330.68228.6075.1962
C*02,151.040.293.56901.236610.3007.0179
C*02,160.190.290.64340.12463.3223.7146
C*02,170.190.230.80470.14714.40121.0000
C*03,‐0.281.750.15860.04830.5211.0002.0153
C*03,042.352.281.03290.62141.7169.8972
C*03,050.190.410.45900.09522.2138.4965
C*03,060.940.941.00640.45502.22611.0000
C*03,072.452.920.83320.51551.3468.4759
C*03,080.470.411.15080.36433.6354.7760
C*03,121.601.581.01400.55001.86951.0000
C*03,150.660.581.12800.42802.9724.8068
C*03,160.470.182.69160.641911.2860.2731
C*04,‐3.305.200.62070.41660.9249.0181
C*04,050.470.940.50080.18291.3711.2591
C*04,062.453.100.78460.48761.2625.3489
C*04,076.217.190.85500.62751.1650.3525
C*04,080.660.880.74980.30471.8450.6615
C*04,126.502.982.26041.56073.2737.0000.0013
C*04,140.470.124.03970.782320.8598.1144
C*04,152.350.942.55241.35644.8033.0034.2248
C*04,160.560.640.87760.32362.38001.0000
C*05,060.660.880.74980.30471.8450.6615
C*05,071.041.930.53190.26761.0569.0846
C*05,080.470.124.03970.782320.8598.1144
C*05,120.380.640.58390.18551.8386.4327
C*05,150.560.471.20880.41833.4936.7857
C*06,‐0.662.980.21580.09760.4774.0000.0009
C*06,073.304.680.69440.46321.0409.0785
C*06,080.470.351.34340.40904.4129.7578
C*06,122.171.931.12490.65691.9265.6787
C*06,140.280.290.96600.23044.05051.0000
C*06,151.221.051.16490.56842.3874.7121
C*06,160.190.410.45900.09522.2138.4965
C*07,‐5.937.540.77290.56601.0554.1068
C*07,081.131.640.68650.34761.3560.3272
C*07,127.165.441.34020.97981.8332.0724
C*07,140.560.531.07390.38113.02561.0000
C*07,153.391.232.82211.63844.8609.0002.0104
C*07,160.850.761.11570.47532.6192.8278
C*07,170.850.412.07940.77215.6002.1955
C*08,120.750.820.91950.38442.19931.0000
C*12,‐3.951.812.51021.39313.5703.0006.0414
C*12,140.560.351.61360.51915.0163.5533
C*12,151.981.461.35970.75722.4413.3589
C*12,160.560.124.85230.977524.0857.0608
C*14,150.190.350.53580.10802.6598.7183
C*15,‐1.130.641.76520.77614.0149.1976
DRB1*01,‐1.011.370.73050.42851.2453.2889
DRB1*01,031.741.711.01330.65551.56651.0000
DRB1*01,041.421.490.95300.59261.5325.9040
DRB1*01,071.331.750.75310.47151.2028.2447
DRB1*01,080.140.380.35900.09871.3062.1615
DRB1*01,100.180.270.68500.20032.3430.7636
DRB1*01,113.023.430.87610.63441.2099.4622
DRB1*01,120.270.300.89950.31162.59651.0000
DRB1*01,131.691.451.17100.74201.8481.5593
DRB1*01,141.010.611.65620.86773.1615.1415
DRB1*01,151.281.600.79720.49251.2904.3981
DRB1*01,161.422.170.64750.41651.0065.0525
DRB1*03,‐2.471.561.59481.05842.4032.0285
DRB1*03,042.061.491.39240.90342.1460.1506
DRB1*03,071.461.520.95920.60051.5322.9055
DRB1*03,080.320.340.93290.34692.50911.0000
DRB1*03,100.410.301.35110.52043.5079.6283
DRB1*03,114.253.921.08690.81631.4472.6083
DRB1*03,120.370.380.95960.37812.4357.0000
DRB1*03,132.062.970.68570.47300.9941.0537
DRB1*03,141.601.221.31730.81282.1347.2688
DRB1*03,152.101.941.08390.72461.6212.7575
DRB1*03,162.882.171.33570.92921.9200.1372
DRB1*04,‐1.460.692.24191.20333.8405.0097.7002
DRB1*04,071.191.790.65960.40721.0686.0976
DRB1*04,080.550.272.06250.81065.2478.1650
DRB1*04,100.460.232.00410.72725.5231.2110
DRB1*04,113.383.920.85710.63231.1619.3561
DRB1*04,120.320.084.20930.873520.2838.0888
DRB1*04,131.511.640.91950.58211.4525.7295
DRB1*04,141.420.612.44351.27844.2960.0050.3596
DRB1*04,151.551.521.02010.64351.61711.0000
DRB1*04,162.101.561.35350.88502.0699.1920
DRB1*07,‐0.730.950.76610.40801.4386.4349
DRB1*07,080.180.190.95970.25743.57841.0000
DRB1*07,100.460.271.71720.65254.5188.3315
DRB1*07,113.113.240.95850.69321.3253.8052
DRB1*07,120.370.301.20050.44983.2038.8037
DRB1*07,131.141.600.71080.43181.1701.2164
DRB1*07,140.871.330.64820.36971.1365.1330
DRB1*07,150.961.520.62630.36821.0653.0925
DRB1*07,161.551.640.94780.60231.4916.9083
DRB1*08,110.690.720.94680.48001.86771.0000
DRB1*08,130.180.300.59910.18021.9924.5641
DRB1*08,150.230.112.00180.47798.3861.4812
DRB1*08,160.230.420.54430.18881.5689.3186
DRB1*09,110.410.152.70640.83238.8005.0990
DRB1*10,110.730.381.92630.87244.2536.1152
DRB1*10,130.410.192.16430.72436.4676.1845
DRB1*10,140.230.230.99980.30473.28041.0000
DRB1*10,150.500.301.65290.66374.1167.3568
DRB1*10,160.410.420.98150.40602.37291.0000
DRB1*11,‐4.894.611.06400.81511.3890.6828
DRB1*11,120.820.721.13770.59562.1732.7418
DRB1*11,134.484.610.97040.73881.2745.8354
DRB1*11,142.472.401.02910.71221.4868.9252
DRB1*11,153.433.051.12920.81971.5554.4618
DRB1*11,164.395.830.74140.57070.9633.0262
DRB1*12,130.230.300.74930.24482.2936.7823
DRB1*12,140.230.112.00180.47798.3861.4812
DRB1*12,150.410.420.98150.40602.37291.0000
DRB1*12,160.320.530.59860.24121.4857.2825
DRB1*13,‐1.281.370.93230.56701.5327.8020
DRB1*13,141.100.881.25470.70622.2292.4642
DRB1*13,151.421.900.74010.47111.1628.2160
DRB1*13,162.152.670.80130.55121.1647.2603
DRB1*14,‐1.510.722.19101.19103.7040.0111.8010
DRB1*14,151.601.221.31730.81282.1347.2688
DRB1*14,161.101.490.73540.44091.2267.2538
DRB1*15,‐1.741.331.30790.82342.0775.2867
DRB1*15,161.651.601.02880.65681.6116.9092
DRB1*16,‐1.651.830.89810.58081.3888.6596
DQB1*02,‐5.072.931.72681.13802.7473.0112.1561
DQB1*02,0311.6112.010.96250.74641.2412.7951
DQB1*02,040.390.291.33150.31755.58481.0000
DQB1*02,0510.8310.061.08650.83001.4221.5845
DQB1*02,065.227.710.65910.47080.9227.0159.2227
DQB1*03,‐12.4711.521.09390.84901.4095.5200
DQB1*03,041.711.371.25860.64072.4725.6127
DQB1*03,0520.4219.141.08410.88171.3328.4623
DQB1*03,069.0412.010.72810.55690.9521.0231.3238
DQB1*04,050.621.270.48800.20151.1819.1239
DQB1*04,060.390.201.99920.387110.3261.4729
DQB1*05,‐9.829.181.07740.81371.4266.6182
DQB1*05,068.658.111.07380.79781.4452.6513
DQB1*06,‐2.813.220.86700.53661.4006.6231
DPB1*01,022.331.321.77780.49686.3617.5719
DPB1*01,042.914.850.58790.26571.3009.1969
DPB1*02,‐7.362.642.92821.21987.0290.0110.1866
DPB1*02,032.712.641.02720.38962.70811.0000
DPB1*02,0424.6122.031.15570.79641.6772.5129
DPB1*02,130.970.881.10080.21205.71651.0000
DPB1*02,141.161.320.87840.21773.54381.0000
DPB1*02,171.160.442.65880.318222.2137.6819
DPB1*03,046.409.690.63660.36231.1187.1283
DPB1*04,‐20.7425.110.78030.54011.1271.2118
DPB1*04,050.971.760.54550.14512.0506.4669
DPB1*04,091.360.443.10810.380225.4108.4462
DPB1*04,102.525.730.42540.19400.9330.0482.8199
DPB1*04,133.682.641.40810.55483.5740.6590
DPB1*04,142.133.520.59630.23661.5029.3133
DPB1*04,172.130.882.45050.538711.1465.3634
DPB1*01,‐6.013.521.74970.79143.8688.2109

All the bold values are less than .05, thus the alleles and combined HLA types with this values are significantly associated with the risk of developing the disease.

Combined HLA types in both CRI patients and control individuals All the bold values are less than .05, thus the alleles and combined HLA types with this values are significantly associated with the risk of developing the disease.

Analysis of HLA haplotypes associated with CRI

Using the estimation‐maximisation algorithm included in Arlequin software (version 3.5), we analysed all the HLA‐ A, ‐B, ‐C, ‐DRB1, ‐DQB1 and ‐DPB1 combinations of two, three, four, five and six loci haplotypes found in Romanian patients with CRI. To establish the haplotypes that were significantly positively associated with CRI in our patients, the Bonferroni correction was performed by multiplying the obtained P‐value to the number of identified haplotypes for each locus combination (eg 1000 identified haplotypes for A‐C loci combination): A*01‐C*15 (p = .0003, pc = .030) and A*02‐C*12 (p = .0005, pc = .0486).

DISCUSSION

CRI is an important healthcare problem in Romania. Few studies have shown a strong association between HLA polymorphisms and CRI. Herein, to assess the association of HLA genes with CRI, patients and controls were enrolled and examined for both HLA class I and II genes. In this study, we assessed the association between HLA allele groups defined at low‐resolution levels, genotypes, haplotypes and CRI using a case‐control approach. The appearance of CRI could be associated with other HLA types in different populations or different ethnicities of the same population. These findings could be due to differences in the number of patients and controls between studies, different techniques used for HLA‐typing and different ethnic and genetic backgrounds of each population. A study performed by researchers in Azerbaijan found that A*11 and A*33 were associated with vulnerability to CRI. In our study, the A*01,11 and A*03,32 genotypes were significantly more frequent in CRI patients than in controls, although the A*01, A*03, A*11 and A*32 alleles were not. In the Cantonese population in China, A*24 was the most frequently identified allele in patients with CRI, whereas in Saudi Arabia, the A*26 allele was more frequently present in controls than in patients with CRI. Among different populations, several alleles at the HLA‐C locus were identified to be significantly associated with CRI, although no consistent pattern could be observed. For example, C*01 was found more frequently in patients with CRI from Bosnia, while C*04 was positively associated with CRI in 156 patients from Turkey. C*02 and C*12 were negatively associated with CRI in Bosnia and Saudi Arabia, which contradicts our results (C*02 had a similar frequency in both the patient and control groups, while C*12 was significantly more frequent in the CRI than in the control group). Concerning the HLA‐B locus, B*40 was the only significantly more frequent allele in Romanian patients with CRI. The same allele group was also found to be positive in a prospective study conducted in Turkey and in a retrospective study from China. . Our results contradict the negative HLA B*40 association in Pakistan and Venezuela. In other countries, B*15 was observed more frequently in patients with CRI. , , In the present study, it had a similar frequency in both the control and patient groups. B*40 and C*12 are known to be associated with diseases that might affect kidney function and disease progression to CRI. For instance, B*40 is linked to systemic lupus erythematosus in Argentina and Pakistan. Goebel et al. found a significant association between HLA C*12 and renal cell carcinoma in German patients. Some of the HLA‐DRB1 alleles were significantly different in patients with CRI compared with the controls in certain studies. For instance, HLA‐DRB1*03, HLA‐DRB1*04, HLA‐DRB1*11 and DQB1*02 were linked to the CRI risk in China, whereas DRB1*14 was observed more frequently in patients from Vietnam. The identified HLA alleles might be identified as potential haplotypes of allele groups inherited in patients with CRI. For example, C*12 and C*15 were related to certain common haplotypes within Romanian patients with CRI: A*01‐C*15 and A*02‐C*12. The frequency of other haplotypes carrying the C*12 or C*15 alleles did not differ significantly between the patients with CRI and control groups. This could be explained by the fact that in different haplotypes, alleles might have different behaviours, either acting as triggers or as protective factors against the appearance of the disease. Our work has several limitations: only asymptotic tests were used, without performing any exact tests. The research focused on allele, genotype and haplotype analyses. Since CRI is still a relatively frequent condition, it is not possible to exclude that in the control population. Therefore, certain subjects would be diagnosed with CRI during their life. Considering these limitations, the results regarding certain alleles, genotypes and haplotypes could be questionable. In conclusion, our results indicate that several HLA allele groups and genotypes are strongly associated with CRI in the Romanian population. B*40, C*12, C*15, DRB1*14, DPB1*02, C*12, ‐, A*01‐C*15 and A*02‐C*12 could be positively associated with CRI. We believe that this work could be extended to determine whether selecting kidney donors without susceptible HLA allele groups or genotypes for CRI development could lead to longer survival rates in kidney allografts in our patients. Furthermore, this study could help identify patients presenting with certain HLA profiles at risk of developing renal insufficiency. This would enable nephrologists to better manage these patients to improve their clinical state.

CONFLICT OF INTEREST

The authors declare that there is no conflict of interest.

AUTHOR CONTRIBUTIONS

Ion Mărunţelu initiated the work and contributed essentially to the manuscript. Ion Mărunţelu and Ileana Constantinescu made the research design and implementation. Bogdan Mihai Cristea, Secil Omer and Carmen Monica Preda contributed to the analysis of the results and the writing of the manuscript. Ileana Constantinescu supervised the entire project.
  21 in total

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10.  Relevance of HLA gene polymorphisms in Romanian patients with chronic renal insufficiency undergoing renal transplantation.

Authors:  Ion Mărunţelu; Bogdan Mihai Cristea; Secil Omer; Carmen Monica Preda; Ileana Constantinescu
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1.  Relevance of HLA gene polymorphisms in Romanian patients with chronic renal insufficiency undergoing renal transplantation.

Authors:  Ion Mărunţelu; Bogdan Mihai Cristea; Secil Omer; Carmen Monica Preda; Ileana Constantinescu
Journal:  J Clin Lab Anal       Date:  2021-10-27       Impact factor: 2.352

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