| Literature DB >> 34690467 |
Palaniyandi Velusamy1, Kannan Kiruba2, Chia-Hung Su3, Viswanathan Arun4, Periasamy Anbu5, Subash C B Gopinath6, Baskaralingam Vaseeharan7.
Abstract
SARS-CoV2 is a member of human coronaviruses and is the causative agent of the present pandemic COVID-19 virus. In order to control COVID-19, studies on viral structure and mechanism of infectivity and pathogenicity are sorely needed. The spike (S) protein is comprised of S1 & S2 subunits. These spike protein subunits enable viral attachment by binding to the host cell via ACE-2 (angiotensin converting enzyme-2) receptor, thus facilitating the infection. During viral entry, one of the key steps is the cleavage of the S1-S2 spike protein subunits via surface TMPRSS2 (transmembrane protease serine 2) and results in viral infection. Hence, the S-protein is critical for the viral attachment and penetration into the host. The rapid advancement of our knowledge on the structural and functional aspects of the spike protein could lead to development of numerous candidate vaccines against SARS-CoV2. Here the authors discuss about the structure of spike protein and explore its related functions. Our aim is to provide a better understanding that may aid in fighting against CoVID-19 and its treatment.Entities:
Keywords: Coronavirus; SARS-CoV2; Spike Protein; Vaccine; Virus Entry
Year: 2021 PMID: 34690467 PMCID: PMC8523302 DOI: 10.1016/j.jksus.2021.101648
Source DB: PubMed Journal: J King Saud Univ Sci ISSN: 1018-3647
Fig. 1Structural features of SARS-CoV2 S-protein and its functions. Interaction of the S-protein with host cells: The host cell ACE-2 receptor anchors the virus via the RBD of the S-protein.
Fig. 2Graphic representation of S-protein assisted membrane fusion mechanism of SARS-CoV2: Interaction of the RBD from the S1 subunit peptide with the DPP4 receptor results in (i) the formation of a pre-hairpin structure, thus exposing HR1 and inserting the fusion peptide into the host cell membrane, (ii) formation of fusion intermediates by FP interlinked with the host cell membrane, and (iii) 6-HB formation by refolding of HR2 into stabilized trimer hairpins, thus bringing the virus and host cell closer for fusion. Additional conformational changes may occur during the fusion process.
Fig. 3Genomic organization of SARS-CoV2 and structural features of the S-protein: The genome of SARS-CoV2 exhibits of 2 major ORFs (1a and 1b), coding for sixteen-non-structural proteins (16 NSPs) and other structural proteins like the S-protein, E-protein, M−protein, N-protein. The spike protein contains S1 and S2 subunits; each carrying domains like the NTD, RBD, FP, etc. Arrowheads indicate protease-cleavage sites.
Summary of potential vaccines for SARS-CoV & MER-CoV.
| Type of Vaccines | Target | Procs | Cons | Reference |
|---|---|---|---|---|
| Deoxyribonucleic acid (DNA) | Spike protein | Avoids handling of infectious virus, high thermal stability, rapid scale up possible, cheap production, human test conducted (SARS-CoV). | Delivery vehicles needed to obtain high immunogenicity. | ( |
| Ribonucleic acid (RNA) | Spike protein | Avoids handling of infectious virus, highly immunogenic, rapid scale up possible. | High reactivity of vaccine. | ( |
| S-protein (Full length) | Spike protein | Produces good T-cell response, neutralizing antibodies and protective immunity. | May cause liver damage and enhance infection. | ( |
| Viral-vector | Spike protein | Produces good quality neutralizing antibodies, protective immunity and/ or T-cell responses. | ADE effect could be induced in susceptible cases. | ( |
| Recombinant S-protein | Spike protein | Avoids handling of infectious virus, adjuvants could increase immunogenicity. | Avoids handling of infectious virus, adjuvants could increase immunogenicity. | ( |
| Receptor-Binding-Domain (RBD) | Entire virion | Produces protective immunity, neutralizing antibodies and T-cell response | Unknown | ( |
| Deoxyribonucleic acid (DNA) | Entire virion | Produces good quality neutralizing antibodies, protective immunity and/ or T-cell responses. | Limited response; mutants could not be neutralized. | ( |
| Recombinant Receptor-Binding-Domain (rRBD) | Entire virion | Results in cross protection, provides protective immunity, produces neutralizing antibodies and T-cell response; More safe and effective vaccine than other RBD based vaccines. | More doses are required as adjuvants | ( |
| Killed vaccine (An inactivated) | Entire virion | Existing production process for licensed vaccines could be utilized; No need for additional infrastructure; immunogenicity could be improved with the use of adjuvants. | Utlization of high concentration of virus (attenuated virus could solve this issue); Integrity of epitope/ antigen is an issue. | ( |
| An attenuated vaccine (Live) | Entire virion | Existing production process for licensed vaccines could be utilized; No need for additional infrastructure. | Longer duration to obtain attenuated coronavirus vaccine seeds; extensive testing required for safety issues. | ( |