| Literature DB >> 34690461 |
Siva Athreya1, Giridhara R Babu2, Aniruddha Iyer3, Mohammed Minhaas B S3, Nihesh Rathod3, Sharad Shriram3, Rajesh Sundaresan3, Nidhin Koshy Vaidhiyan3, Sarath Yasodharan3.
Abstract
We provide a methodology by which an epidemiologist may arrive at an optimal design for a survey whose goal is to estimate the disease burden in a population. For serosurveys with a given budget of C rupees, a specified set of tests with costs, sensitivities, and specificities, we show the existence of optimal designs in four different contexts, including the well known c-optimal design. Usefulness of the results are illustrated via numerical examples. Our results are applicable to a wide range of epidemiological surveys under the assumptions that the estimate's Fisher-information matrix satisfies a uniform positive definite criterion. © Indian Statistical Institute 2021.Entities:
Keywords: COVID-19; Fisher information; adjusted estimate.; c-optimal design; serosurvey; weighted estimate; worst-case design
Year: 2021 PMID: 34690461 PMCID: PMC8524406 DOI: 10.1007/s13571-021-00267-w
Source DB: PubMed Journal: Sankhya B (2008) ISSN: 0976-8386
Numerical examples for a budget of Rs. 1 Crore
| Test cost in Rs. | Parameter or | Optimal design | Var/Re. | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| parameter range | (quantised to | ||||||||||
| Criterion | RAT | RT-PCR | Anti-body | S/A | (0,0,1) | (1,0,1) | (0,1,1) | ||||
| Local | 450 | 1,600 | 300 | 0.10 | 0.30 | 0.01 | – | 521 | 13,125 | 0 | 0.3514 |
| Local | 450 | 1,000 | 300 | 0.10 | 0.30 | 0.01 | – | 8,000 | 0 | 5,846 | 0.3413 |
| Local | 450 | 100 | 300 | 0.10 | 0.30 | 0.01 | – | 0 | 0 | 25,000 | 0.1252 |
| Worst-case | 450 | 100 | 300 | 0.01-0.15 | 0.10-0.50 | 0.00-0.02 | – | 838 | 0 | 24,371 | 0.1305 |
| On-the-ground, 10% (S) | 450 | 1,600 | 300 | 0.10 | 0.30 | 0.01 | S | 300 | 1,046 | 0 | 0.3603 |
| RAT sensitivity | A | 0 | 12,167 | 0 | |||||||
| 0.68(S) 0.47(A) | |||||||||||
Table of states and nominal test responses M(s, j)
| State | Probability | State | RAT | RT-PCR | Antibody |
|---|---|---|---|---|---|
| description | |||||
| Active infection but no antibodies | 1 | 1 | 0 | ||
| Antibodies present but no evidence of active infection | 0 | 0 | 1 | ||
| Simultaneous presence of active infection and antibodies | 1 | 1 | 1 | ||
|
| Neither active infection nor antibodies | 0 | 0 | 0 |
Figure 1Noise model for the RAT, RT-PCR, and antibody test outcomes. The left-most subfigure is for RAT, j = 1. The middle subfigure is for the RT-PCR test, j = 2. The right-most figure is for the antibody test, j = 3. In each subfigure, the first connection is a “noiseless” channel indicated by M(s, j). In each subfigure, the second channel is a noisy binary asymmetric channel whose correct outcome probabilities are given by the specificity σ(0, j) and sensitivity σ(1, j). The values are indicated in Table 2. The cross-over probabilities are 1 minus these
The sensitivities and specificities
| RAT | RT-PCR test | Antibody test | |
|---|---|---|---|
| Specificities ( | 0.975 | 0.97 | 0.977 |
| Sensitivities ( | 0.5 | 0.95 | 0.921 |