Literature DB >> 34690407

Semiparametric isotonic regression modelling and estimation for group testing data.

Ao Yuan1, Jin Piao2, Jing Ning3, Jing Qin4.   

Abstract

In the group testing procedure, several individual samples are grouped and the pooled samples, instead of each individual sample, are tested for outcome status (e.g., infectious disease status). Although this cost-effectiveness strategy in data collection is both labor and time efficient, it poses statistical challenges to derive statistically and computationally efficient estimators under semiparametric models. We consider semiparametric isotonic regression models for the simultaneous estimation of the conditional probability curve and covariate effects, in which a parametric form for combining the covariate information is assumed and the monotonic link function is left unspecified. We develop an expectation-maximization algorithm to overcome the computational challenge and embed the pool-adjacent violators algorithm in the M-step to facilitate the computation. We establish the large sample behavior of the proposed estimators and examine their finite sample performance in simulation studies. We apply the proposed method to data from the National Health and Nutrition Examination Survey for illustration.

Entities:  

Keywords:  Expectation-maximization algorithm; group testing data; isotonic regression; pool-adjacent violators algorithm

Year:  2020        PMID: 34690407      PMCID: PMC8528191          DOI: 10.1002/cjs.11581

Source DB:  PubMed          Journal:  Can J Stat        ISSN: 0319-5724            Impact factor:   0.875


  10 in total

1.  Regression analysis of group testing samples.

Authors:  M Xie
Journal:  Stat Med       Date:  2001-07-15       Impact factor: 2.373

2.  Dual screening.

Authors:  W O Johnson; L M Pearson
Journal:  Biometrics       Date:  1999-09       Impact factor: 2.571

3.  The efficiency of pooling in the detection of rare mutations.

Authors:  J L Gastwirth
Journal:  Am J Hum Genet       Date:  2000-10       Impact factor: 11.025

4.  Generalized monotonic regression based on B-splines with an application to air pollution data.

Authors:  Florian Leitenstorfer; Gerhard Tutz
Journal:  Biostatistics       Date:  2006-10-24       Impact factor: 5.899

5.  Pooling nasopharyngeal/throat swab specimens to increase testing capacity for influenza viruses by PCR.

Authors:  Tam T Van; Joseph Miller; David M Warshauer; Erik Reisdorf; Daniel Jernigan; Rosemary Humes; Peter A Shult
Journal:  J Clin Microbiol       Date:  2012-01-11       Impact factor: 5.948

6.  Cost savings and increased efficiency using a stratified specimen pooling strategy for Chlamydia trachomatis and Neisseria gonorrhoeae.

Authors:  Joanna Lynn Lewis; Vivian Marie Lockary; Sadika Kobic
Journal:  Sex Transm Dis       Date:  2012-01       Impact factor: 2.830

7.  Three-dimensional array-based group testing algorithms.

Authors:  Hae-Young Kim; Michael G Hudgens
Journal:  Biometrics       Date:  2008-11-13       Impact factor: 2.571

8.  Group testing regression model estimation when case identification is a goal.

Authors:  Boan Zhang; Christopher R Bilder; Joshua M Tebbs
Journal:  Biom J       Date:  2013-02-08       Impact factor: 2.207

9.  National health and nutrition examination survey: plan and operations, 1999-2010.

Authors:  George Zipf; Michele Chiappa; Kathryn S Porter; Yechiam Ostchega; Brenda G Lewis; Jennifer Dostal
Journal:  Vital Health Stat 1       Date:  2013-08

10.  A highly efficient design strategy for regression with outcome pooling.

Authors:  Emily M Mitchell; Robert H Lyles; Amita K Manatunga; Neil J Perkins; Enrique F Schisterman
Journal:  Stat Med       Date:  2014-09-15       Impact factor: 2.373

  10 in total

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