| Literature DB >> 34671491 |
Hani Susianti1, Dwi Priyadi Djatmiko1, I Komang Adi Widana1, Deasy Ayuningtyas Tandio1, Catur Suci Sutrisnani1, Singgih Pudjo Wahono1, Ira Puspitawati2.
Abstract
BACKGROUND: Genetic studies of end-stage renal disease (ESRD), including those of human leukocyte antigen (HLA) genes, have been reported in several populations but have not yet been evaluated in Indonesia. Some studies have reported that these genes had a substantial role in ESRD. This study aims to analyze the association between HLA genes and ESRD within the Indonesian community.Entities:
Year: 2021 PMID: 34671491 PMCID: PMC8523260 DOI: 10.1155/2021/4219822
Source DB: PubMed Journal: Int J Nephrol
Figure 1Numbers of HLA-A, HLA-B, HLA-C, HLA-DPB1, HLA-DQB1, and HLA-DRB1 allele groups in ESRD patients, control, and both groups.
HLA class I allele frequency.
| HLA subtype | Alleles | ESRD | Control | OR | OR 95% CI |
| ||
|---|---|---|---|---|---|---|---|---|
|
| % |
| % | |||||
| HLA-A | A | 0 | 0 | 2 | 1.30 | — | — | — |
| A | 31 | 22.50 | 23 | 14.40 | 1.726 | 0.95–3.13 | 0.10 | |
| A | 34 | 24.60 | 33 | 20.60 | 1.258 | 0.73–2.17 | 0.49 | |
| A | 49 | 35.50 | 81 | 50.60 | 0.537 | 0.34–0.86 | 0.01 | |
| A | 2 | 1.40 | 0 | 0 | — | — | — | |
| A | 2 | 1.40 | 0 | 0 | — | — | — | |
| A | 9 | 6.50 | 13 | 8.10 | 0.789 | 0.33–1.91 | 0.76 | |
| A | 6 | 4.30 | 5 | 3.10 | 1.409 | 0.42–4.72 | 0.80 | |
| A | 3 | 2.20 | 0 | 0 | — | — | — | |
|
| ||||||||
| HLA-B | B | 4 | 2.90 | 4 | 2.50 | 1.164 | 0.29–4.74 | 1 |
| B | 2 | 1.40 | 0 | 0 | — | — | — | |
| B | 7 | 5.10 | 3 | 1.90 | 2.796 | 0.71–11.03 | 0.23 | |
| B | 52 | 37.70 | 62 | 38.80 | 0.956 | 0.60–1.53 | 0.94 | |
| B | 15 | 10.90 | 16 | 10 | 1.098 | 0.52–2.31 | 0.95 | |
| B | 8 | 5.80 | 8 | 5 | 1.169 | 0.43–3.20 | 0.96 | |
| B | 5 | 3.60 | 17 | 10.60 | 0.316 | 0.11–0.88 | 0.02 | |
| B | 8 | 5.80 | 11 | 6.90 | 0.834 | 0.33–2.14 | 0.89 | |
| B | 4 | 2.90 | 2 | 1.30 | 2.358 | 0.43–13.08 | 0.55 | |
| B | 8 | 5.80 | 8 | 5 | 1.169 | 0.43–3.20 | 0.96 | |
| B | 4 | 2.90 | 12 | 7.50 | 0.368 | 0.12–1.17 | 0.13 | |
| B | 7 | 5.10 | 11 | 6.90 | 0.724 | 0.27–1.92 | 0.69 | |
| B | 1 | 0.70 | 2 | 1.30 | 0.577 | 0.05–6.43 | 1 | |
| B | 3 | 2.20 | 2 | 1.30 | 1.756 | 0.29–10.66 | 0.86 | |
| B | 3 | 2.20 | 1 | 0.60 | 3.533 | 0.36–34.36 | 0.52 | |
|
| ||||||||
| HLA-C | C | 6 | 4.30 | 2 | 1.20 | 3.977 | 0.69–51.79 | 0.15 |
| C | 14 | 10.10 | 13 | 8.10 | 1.277 | 0.58–2.82 | 0.68 | |
| C | 20 | 14.50 | 29 | 18.10 | 0.735 | 0.40–1.36 | 0.41 | |
| C | 4 | 2.20 | 3 | 1.90 | 1.163 | 0.23–5.86 | 1 | |
| C | 40 | 29.70 | 50 | 31.30 | 0.93 | 0.57–1.53 | 0.87 | |
| C | 44 | 31.20 | 48 | 30 | 1.056 | 0.64–1.73 | 0.93 | |
| C | 2 | 0.40 | 2 | 1.30 | 1.162 | 0.16–8.36 | 1 | |
| C | 5 | 3.60 | 9 | 5.60 | 0.631 | 0.21–1.93 | 0.59 | |
| C | 5 | 3.60 | 3 | 1.90 | 1.967 | 0.46–8.39 | 0.57 | |
p < 0.05. HLA types with frequency >1% were performed in ESRD or control groups. HLA: human leukocyte antigen; ESRD: end-stage renal disease.
HLA class II allele frequency.
| HLA subtype | Alleles | ESRD | Control | OR | OR 95% CI |
| ||
|---|---|---|---|---|---|---|---|---|
|
| % |
| % | |||||
| HLA-DRB1 | DRB1 | 5 | 3.60 | 2 | 1.30 | 2.97 | 0.567–15.56 | 0.34 |
| DRB1 | 6 | 4.30 | 7 | 4.40 | 0.994 | 0.326–3.03 | 1 | |
| DRB1 | 9 | 6.50 | 14 | 8.80 | 0.728 | 0.305–1.74 | 0.62 | |
| DRB1 | 7 | 5.10 | 4 | 2.50 | 2.084 | 0.597–7.28 | 0.39 | |
| DRB1 | 4 | 2.90 | 3 | 1.90 | 1.562 | 0.344–7.10 | 0.84 | |
| DRB1 | 3 | 2.20 | 0 | 0 | — | — | — | |
| DRB1 | 3 | 2.20 | 4 | 2.50 | 0.867 | 0.191–3.94 | 1 | |
| DRB1 | 61 | 44.20 | 80 | 50 | 0.792 | 0.502–1.25 | 0.38 | |
| DRB1 | 5 | 3.60 | 3 | 1.90 | 1.967 | 0.462–8.39 | 0.57 | |
| DRB1 | 31 | 22.50 | 38 | 23.80 | 0.93 | 0.542–1.60 | 0.90 | |
| DRB1 | 2 | 1.40 | 4 | 2.50 | 0.574 | 0.103–3.18 | 0.83 | |
|
| ||||||||
| HLA-DQB1 | DQB1 | 11 | 8 | 17 | 10.70 | 0.729 | 0.329–1.61 | 0.56 |
| DQB1 | 68 | 49.30 | 83 | 51.90 | 0.901 | 0.572–1.42 | 0.74 | |
| DQB1 | 5 | 3.60 | 6 | 3.70 | 0.965 | 0.288–3.23 | 1 | |
| DQB1 | 33 | 23.90 | 31 | 19.30 | 1.308 | 0.752–2.28 | 0.42 | |
| DQB1 | 21 | 15.20 | 23 | 14.40 | 1.069 | 0.563–2.03 | 0.97 | |
|
| ||||||||
| HLA-DPB1 | DPB1 | 5 | 3.60 | 6 | 3.80 | 0.965 | 0.288–3.23 | 1.00 |
| DPB1 | 20 | 14.50 | 13 | 8.10 | 1.917 | 0.915–4.01 | 0.12 | |
| DPB1 | 8 | 5.80 | 15 | 9.40 | 0.595 | 0.244–1.45 | 0.35 | |
| DPB1 | 29 | 21 | 34 | 21.30 | 0.986 | 0.564–1.72 | 1.00 | |
| DPB1 | 24 | 17.40 | 26 | 16.30 | 1.085 | 0.591–1.99 | 0.91 | |
| DPB1 | 31 | 22.50 | 36 | 22.50 | 0.998 | 0.578–1.72 | 1.00 | |
| DPB1 | 0 | 0 | 4 | 2.50 | — | — | — | |
| DPB1 | 1 | 0.70 | 2 | 1.30 | 0.577 | 0.052–6.43 | 1 | |
| DPB1 | 0 | 0 | 2 | 1.30 | — | — | — | |
| DPB1 | 0 | 0 | 2 | 1.30 | — | — | — | |
| DPB1 | 4 | 2.90 | 2 | 1.30 | 2.358 | 0.425–13.08 | 0.55 | |
| DPB1 | 7 | 5.10 | 10 | 6.30 | 0.802 | 0.297–2.17 | 0.86 | |
| DPB1 | 3 | 2.20 | 2 | 1.30 | 1.756 | 0.289–10.66 | 0.86 | |
HLA types with frequency >1% were performed in ESRD or control groups. HLA: human leukocyte antigen; ESRD: end-stage renal disease.
Association of two-locus haplotypes with ESRD.
| Haplotypes | ESRD | Control |
| OR | OR 95%CI | |||
|---|---|---|---|---|---|---|---|---|
|
| % |
| % | |||||
| HLA-A and HLA-B | A | 26 | 9.42 | 14 | 2.19 | 0.022 | 2.273 | 1.162–4.446 |
| A | 5 | 1.81 | 24 | 3.59 | 0.002 | 0.238 | 0.089–0.635 | |
| A | 35 | 12.68 | 65 | 10.16 | 0.016 | 0.569 | 0.364–0.890 | |
|
| ||||||||
| HLA-A and HLA-C | A | 22 | 7.97 | 10 | 1.56 | 0.014 | 2.685 | 1.249–5.774 |
| A | 27 | 9.78 | 53 | 8.28 | 0.020 | 0.546 | 0.333–0.896 | |
|
| ||||||||
| HLA-A and HLA-DRB1 | A | 51 | 18.48 | 87 | 13.59 | 0.015 | 0.607 | 0.410–0.897 |
|
| ||||||||
| HLA-A and HLA-DQB1 | A | 53 | 19.20 | 85 | 13.28 | 0.042 | 0.657 | 0.445–0.969 |
|
| ||||||||
| HLA-B and HLA-C | B | 5 | 1.81 | 24 | 3.75 | 0.001 | 0.228 | 0.086–0.605 |
|
| ||||||||
| HLA-B and HLA-DRB1 | B | 61 | 22.10 | 39 | 6.09 | 0.001 | 2.044 | 1.317–3.172 |
| B | 9 | 3.26 | 1 | 0.16 | 0.010 | 10.75 | 1.354–85.410 | |
| B | 1 | 0.36 | 9 | 1.41 | 0.036 | 0.125 | 0.015–0.998 | |
| B | 5 | 1.81 | 17 | 2.66 | 0.037 | 0.328 | 0.119–0.903 | |
|
| ||||||||
| HLA-A and HLA-DQB1 | B | 5 | 1.81 | 17 | 2.66 | 0.037 | 0.329 | 0.120–0.903 |
| B | 8 | 2.90 | 1 | 0.16 | 0.021 | 9.522 | 1.184–76.610 | |
HLA: human leukocyte antigen; ESRD: end-stage renal disease.
Association of three-locus haplotypes with ESRD.
| ESRD | Control |
| OR | OR 95%CI | |||
|---|---|---|---|---|---|---|---|
|
| % |
| % | ||||
| A | 33 | 5.98 | 7 | 1.01 | 0.001 | 5.724 | 2.512–13.050 |
| A | 7 | 1.27 | 34 | 5.34 | 0.001 | 0.227 | 0.100–0.518 |
| A | 1 | 0.18 | 9 | 1.41 | 0.036 | 0.126 | 0.016–1.003 |
| A | 7 | 1.27 | 1 | 0.15 | 0.043 | 8.171 | 1.002–66.610 |
HLA: human leukocyte antigen; ESRD: end-stage renal disease.