Literature DB >> 34667293

Discovery of novel DprE1 inhibitors via computational bioactivity fingerprints and structure-based virtual screening.

Xue-Ping Hu1,2, Liu Yang1, Xin Chai1, Yi-Xuan Lei1, Md Shah Alam3,4, Lu Liu5, Chao Shen1, De-Jun Jiang1, Zhe Wang1, Zhi-Yong Liu3,4, Lei Xu6, Kang-Lin Wan7, Tian-Yu Zhang3,4, Yue-Lan Yin8, Dan Li9, Dong-Sheng Cao10, Ting-Jun Hou11,12.   

Abstract

Decaprenylphosphoryl-β-D-ribose oxidase (DprE1) plays important roles in the biosynthesis of mycobacterium cell wall. DprE1 inhibitors have shown great potentials in the development of new regimens for tuberculosis (TB) treatment. In this study, an integrated molecular modeling strategy, which combined computational bioactivity fingerprints and structure-based virtual screening, was employed to identify potential DprE1 inhibitors. Two lead compounds (B2 and H3) that could inhibit DprE1 and thus kill Mycobacterium smegmatis in vitro were identified. Moreover, compound H3 showed potent inhibitory activity against Mycobacterium tuberculosis in vitro (MICMtb = 1.25 μM) and low cytotoxicity against mouse embryo fibroblast NIH-3T3 cells. Our research provided an effective strategy to discover novel anti-TB lead compounds.
© 2021. The Author(s), under exclusive licence to CPS and SIMM.

Entities:  

Keywords:  DprE1; covalent inhibitors; molecular docking; tuberculosis; virtual screening

Mesh:

Substances:

Year:  2021        PMID: 34667293      PMCID: PMC9160271          DOI: 10.1038/s41401-021-00779-1

Source DB:  PubMed          Journal:  Acta Pharmacol Sin        ISSN: 1671-4083            Impact factor:   7.169


  44 in total

1.  Identification and Profiling of Hydantoins-A Novel Class of Potent Antimycobacterial DprE1 Inhibitors.

Authors:  Maciej K Rogacki; Eleni Pitta; Olga Balabon; Sophie Huss; Eva Maria Lopez-Roman; Argyrides Argyrou; Delia Blanco-Ruano; Monica Cacho; Christophe M L Vande Velde; Koen Augustyns; Lluis Ballell; David Barros; Robert H Bates; Fraser Cunningham; Pieter Van der Veken
Journal:  J Med Chem       Date:  2018-12-13       Impact factor: 7.446

Review 2.  Rising standards for tuberculosis drug development.

Authors:  Tanjore S Balganesh; Pedro M Alzari; Stewart T Cole
Journal:  Trends Pharmacol Sci       Date:  2008-09-15       Impact factor: 14.819

3.  Docking covalent inhibitors: a parameter free approach to pose prediction and scoring.

Authors:  Kai Zhu; Kenneth W Borrelli; Jeremy R Greenwood; Tyler Day; Robert Abel; Ramy S Farid; Edward Harder
Journal:  J Chem Inf Model       Date:  2014-06-26       Impact factor: 4.956

4.  Azaindoles: noncovalent DprE1 inhibitors from scaffold morphing efforts, kill Mycobacterium tuberculosis and are efficacious in vivo.

Authors:  Pravin S Shirude; Radha Shandil; Claire Sadler; Maruti Naik; Vinayak Hosagrahara; Shahul Hameed; Vikas Shinde; Chandramohan Bathula; Vaishali Humnabadkar; Naveen Kumar; Jitendar Reddy; Vijender Panduga; Sreevalli Sharma; Anisha Ambady; Naina Hegde; James Whiteaker; Robert E McLaughlin; Humphrey Gardner; Prashanti Madhavapeddi; Vasanthi Ramachandran; Parvinder Kaur; Ashwini Narayan; Supreeth Guptha; Disha Awasthy; Chandan Narayan; Jyothi Mahadevaswamy; K G Vishwas; Vijaykamal Ahuja; Abhishek Srivastava; K R Prabhakar; Sowmya Bharath; Ramesh Kale; Manjunatha Ramaiah; Nilanjana Roy Choudhury; Vasan K Sambandamurthy; Suresh Solapure; Pravin S Iyer; Shridhar Narayanan; Monalisa Chatterji
Journal:  J Med Chem       Date:  2013-11-21       Impact factor: 7.446

5.  ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB.

Authors:  James A Maier; Carmenza Martinez; Koushik Kasavajhala; Lauren Wickstrom; Kevin E Hauser; Carlos Simmerling
Journal:  J Chem Theory Comput       Date:  2015-07-23       Impact factor: 6.006

6.  Identification of a small molecule with activity against drug-resistant and persistent tuberculosis.

Authors:  Feng Wang; Dhinakaran Sambandan; Rajkumar Halder; Jianing Wang; Sarah M Batt; Brian Weinrick; Insha Ahmad; Pengyu Yang; Yong Zhang; John Kim; Morad Hassani; Stanislav Huszar; Claudia Trefzer; Zhenkun Ma; Takushi Kaneko; Khisi E Mdluli; Scott Franzblau; Arnab K Chatterjee; Kai Johnsson; Kai Johnson; Katarina Mikusova; Gurdyal S Besra; Klaus Fütterer; Scott H Robbins; S Whitney Barnes; John R Walker; William R Jacobs; Peter G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-17       Impact factor: 11.205

7.  Thiolates chemically induce redox activation of BTZ043 and related potent nitroaromatic anti-tuberculosis agents.

Authors:  Rohit Tiwari; Garrett C Moraski; Viktor Krchňák; Patricia A Miller; Mariangelli Colon-Martinez; Eliza Herrero; Allen G Oliver; Marvin J Miller
Journal:  J Am Chem Soc       Date:  2013-02-25       Impact factor: 15.419

8.  Structural basis for benzothiazinone-mediated killing of Mycobacterium tuberculosis.

Authors:  João Neres; Florence Pojer; Elisabetta Molteni; Laurent R Chiarelli; Neeraj Dhar; Stefanie Boy-Röttger; Silvia Buroni; Elizabeth Fullam; Giulia Degiacomi; Anna Paola Lucarelli; Randy J Read; Giuseppe Zanoni; Dale E Edmondson; Edda De Rossi; Maria Rosalia Pasca; John D McKinney; Paul J Dyson; Giovanna Riccardi; Andrea Mattevi; Stewart T Cole; Claudia Binda
Journal:  Sci Transl Med       Date:  2012-09-05       Impact factor: 17.956

9.  Comparative phylogenomics of pathogenic and non-pathogenic mycobacterium.

Authors:  Arun N Prasanna; Sarika Mehra
Journal:  PLoS One       Date:  2013-08-28       Impact factor: 3.240

10.  Treatment outcomes of patients with multidrug and extensively drug-resistant tuberculosis in Zhejiang, China.

Authors:  Ming-Wu Zhang; Lin Zhou; Yu Zhang; Bin Chen; Ying Peng; Fei Wang; Zheng-Wei Liu; Xiao-Meng Wang; Song-Hua Chen
Journal:  Eur J Med Res       Date:  2021-04-03       Impact factor: 2.175

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