Literature DB >> 34666315

Light-weight electrophysiology hardware and software platform for cloud-based neural recording experiments.

Kateryna Voitiuk1, Jinghui Geng2, Matthew G Keefe3, David F Parks1, Sebastian E Sanso4, Nico Hawthorne2, Daniel B Freeman5, Rob Currie4, Mohammed A Mostajo-Radji6,4,7, Alex A Pollen6,7, Tomasz J Nowakowski3,6, Sofie R Salama1,8,4, Mircea Teodorescu2,4, David Haussler1,8,4.   

Abstract

Objective.Neural activity represents a functional readout of neurons that is increasingly important to monitor in a wide range of experiments. Extracellular recordings have emerged as a powerful technique for measuring neural activity because these methods do not lead to the destruction or degradation of the cells being measured. Current approaches to electrophysiology have a low throughput of experiments due to manual supervision and expensive equipment. This bottleneck limits broader inferences that can be achieved with numerous long-term recorded samples.Approach.We developed Piphys, an inexpensive open source neurophysiological recording platform that consists of both hardware and software. It is easily accessed and controlled via a standard web interface through Internet of Things (IoT) protocols.Main results.We used a Raspberry Pi as the primary processing device along with an Intan bioamplifier. We designed a hardware expansion circuit board and software to enable voltage sampling and user interaction. This standalone system was validated with primary human neurons, showing reliability in collecting neural activity in near real-time.Significance.The hardware modules and cloud software allow for remote control of neural recording experiments as well as horizontal scalability, enabling long-term observations of development, organization, and neural activity at scale. Creative Commons Attribution license.

Entities:  

Keywords:  IoT; data acquisition; electrophysiology; in vitro; neural recording; open source; scalable

Mesh:

Year:  2021        PMID: 34666315      PMCID: PMC8667733          DOI: 10.1088/1741-2552/ac310a

Source DB:  PubMed          Journal:  J Neural Eng        ISSN: 1741-2552            Impact factor:   5.379


  39 in total

1.  Controlling bursting in cortical cultures with closed-loop multi-electrode stimulation.

Authors:  Daniel A Wagenaar; Radhika Madhavan; Jerome Pine; Steve M Potter
Journal:  J Neurosci       Date:  2005-01-19       Impact factor: 6.167

2.  Self-organized formation of polarized cortical tissues from ESCs and its active manipulation by extrinsic signals.

Authors:  Mototsugu Eiraku; Kiichi Watanabe; Mami Matsuo-Takasaki; Masako Kawada; Shigenobu Yonemura; Michiru Matsumura; Takafumi Wataya; Ayaka Nishiyama; Keiko Muguruma; Yoshiki Sasai
Journal:  Cell Stem Cell       Date:  2008-11-06       Impact factor: 24.633

3.  Cell diversity and network dynamics in photosensitive human brain organoids.

Authors:  Giorgia Quadrato; Tuan Nguyen; Evan Z Macosko; John L Sherwood; Sung Min Yang; Daniel R Berger; Natalie Maria; Jorg Scholvin; Melissa Goldman; Justin P Kinney; Edward S Boyden; Jeff W Lichtman; Ziv M Williams; Steven A McCarroll; Paola Arlotta
Journal:  Nature       Date:  2017-04-26       Impact factor: 49.962

Review 4.  Neural ensemble communities: open-source approaches to hardware for large-scale electrophysiology.

Authors:  Joshua H Siegle; Gregory J Hale; Jonathan P Newman; Jakob Voigts
Journal:  Curr Opin Neurobiol       Date:  2014-12-17       Impact factor: 6.627

5.  Development of neural population activity toward self-organized criticality.

Authors:  Yuichiro Yada; Takeshi Mita; Akihiro Sanada; Ryuichi Yano; Ryohei Kanzaki; Douglas J Bakkum; Andreas Hierlemann; Hirokazu Takahashi
Journal:  Neuroscience       Date:  2016-11-30       Impact factor: 3.590

6.  Ultrasound-guided, open-source microneurography: Approaches to improve recordings from peripheral nerves in man.

Authors:  James P Dunham; Anna C Sales; Anthony E Pickering
Journal:  Clin Neurophysiol       Date:  2018-07-29       Impact factor: 3.708

7.  Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis.

Authors:  Ian T Fiddes; Gerrald A Lodewijk; Meghan Mooring; Colleen M Bosworth; Adam D Ewing; Gary L Mantalas; Adam M Novak; Anouk van den Bout; Alex Bishara; Jimi L Rosenkrantz; Ryan Lorig-Roach; Andrew R Field; Maximilian Haeussler; Lotte Russo; Aparna Bhaduri; Tomasz J Nowakowski; Alex A Pollen; Max L Dougherty; Xander Nuttle; Marie-Claude Addor; Simon Zwolinski; Sol Katzman; Arnold Kriegstein; Evan E Eichler; Sofie R Salama; Frank M J Jacobs; David Haussler
Journal:  Cell       Date:  2018-05-31       Impact factor: 41.582

8.  Cost-effective and multifunctional acquisition system for in vitro electrophysiological investigations with multi-electrode arrays.

Authors:  Leonardo D Garma; Laura Matino; Giovanni Melle; Fabio Moia; Francesco De Angelis; Francesca Santoro; Michele Dipalo
Journal:  PLoS One       Date:  2019-03-25       Impact factor: 3.240

9.  A spike sorting toolbox for up to thousands of electrodes validated with ground truth recordings in vitro and in vivo.

Authors:  Pierre Yger; Giulia Lb Spampinato; Elric Esposito; Baptiste Lefebvre; Stéphane Deny; Christophe Gardella; Marcel Stimberg; Florian Jetter; Guenther Zeck; Serge Picaud; Jens Duebel; Olivier Marre
Journal:  Elife       Date:  2018-03-20       Impact factor: 8.140

10.  Integrated open-source software for multiscale electrophysiology.

Authors:  Konstantinos Nasiotis; Martin Cousineau; François Tadel; Adrien Peyrache; Richard M Leahy; Christopher C Pack; Sylvain Baillet
Journal:  Sci Data       Date:  2019-10-25       Impact factor: 6.444

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  2 in total

Review 1.  From End to End: Gaining, Sorting, and Employing High-Density Neural Single Unit Recordings.

Authors:  Réka Barbara Bod; János Rokai; Domokos Meszéna; Richárd Fiáth; István Ulbert; Gergely Márton
Journal:  Front Neuroinform       Date:  2022-06-13       Impact factor: 3.739

Review 2.  Cerebral Organoids as an Experimental Platform for Human Neurogenomics.

Authors:  Tomasz J Nowakowski; Sofie R Salama
Journal:  Cells       Date:  2022-09-08       Impact factor: 7.666

  2 in total

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