| Literature DB >> 34657596 |
Lisa J Woodhouse1, Alan A Montgomery2, Jonathan Mant3, Barry R Davis4, Ale Algra5, Jean-Louis Mas6, Jan A Staessen7, Lutgarde Thijs7, Andrew Tonkin8, Adrienne Kirby9, Stuart J Pocock10, John Chalmers11, Graeme J Hankey12, J David Spence13, Peter Sandercock14, Hans-Christoph Diener15, Shinichiro Uchiyama16, Nikola Sprigg1, Philip M Bath17.
Abstract
BACKGROUND: Vascular prevention trials typically use dichotomous event outcomes although this may be inefficient statistically and gives no indication of event severity. We assessed whether ordinal outcomes would be more efficient and how to best analyse them.Entities:
Keywords: Analysis; Ordinal; Prevention; Vascular event
Mesh:
Year: 2021 PMID: 34657596 PMCID: PMC8520648 DOI: 10.1186/s12874-021-01388-6
Source DB: PubMed Journal: BMC Med Res Methodol ISSN: 1471-2288 Impact factor: 4.615
Review of statistical analysis methods [22–27]
| Analysis method | Outcome type | Statistical assumptions | Advantages | Disadvantages |
|---|---|---|---|---|
| Binary logistic regression (BLR) | Binary | • No assumptions made about explanatory variables | • Can adjust for covariates | • Large number of observations required |
| Cox proportional hazards (CPH) | Binary | • Proportionality of hazards over time • Censoring of observations is unrelated to prognosis | • Can adjust for covariates | • If assumptions of the model not met then subsequent analyses and risk estimates will possibly be biased |
| Chi-square (χ2) (CS) | Binary and ordered categorical | • Chi-Square – Total count is > 40 or total count is 20–40 and the expected value of each exposure-outcome category is > 5 | • Simple to implement | • Cannot adjust for covariates |
| Cochran-Armitage trend test (CAT) | Ordered categorical | • Similar to the Chi-square test but it takes into account the ordering across categories | • Easy to interpret | • Cannot adjust for covariates |
| Ordinal logistic regression (OLR) | Ordered categorical | • Response is ordinal • Proportionality of odds | • Can adjust for covariates | • If assumptions of the model not met then subsequent analyses and odds estimates will possibly be biased |
| Mann-Whitney U test (MWU) | Ordered categorical | • Non-parametric test • Response is ordinal / continuous • Observations from both groups are independent of one another | • Easy to interpret | • Cannot adjust for covariates – there are extensions of this method, which allow for adjustment [ |
| Median test (MT) | Ordered categorical | • Non-parametric test • Considers the position of each observation relative to the overall median. | • Easy to interpret | • Cannot adjust for covariates • Inefficient (low power) to detect differences if sample size is large. |
| t-test | Continuous (used on the ordered categorical) | • Response is continuous • Homogeneity of variances | • Easy to interpret | • Cannot adjust for covariates |
| Multiple linear regression (MLR) | Continuous (used on the ordered categorical) | • Response is continuous • Linear relationship • Homogeneity of variances • No or little multicollinearity | • Can adjust for covariates | • Assumes linear relationship • Sensitive to outliers |
| Win Ratio testWins/losses version (WR) | Combination of binary outcomes | • Responses for each outcome are binary • Accounts for clinical priorities of endpoints | • Prioritises the more major component of the outcome • Useful for composite outcomes • Extensions of this approach allow for covariate adjustment [ • Easy to interpret | • New method • Doesn’t use the precise times from randomisation to event occurrence |
Bootstrapping (BS) | Ordered categorical | • None | • No assumptions made about the distribution of the data | • Cannot adjust for covariates • Computationally intensive • Doesn’t provide a meaningful point estimate |
Fig. 1Flow diagram – Identification of included trials
Characteristics of trial participants by type of intervention
| Trials | All | ACT | AHT | APT | CEA | GL | HRT | Statins | Vitamins | P | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| N = 8 | N = 2 | ||||||||||
| Primary (%) | 15 | 4 (36.7%) | 6 (40.0%) | 0 | 1 (6.7%) | 1 (6.7%) | 2 (13.3%) | 1 (6.7%) | 0 | ||
| Secondary (%) | 20 | 4 (20.0%) | 2 (10.0%) | 7 (35.0%) | 2 (10.0%) | 0 | 0 | 3 (15.0%) | 2 (10.0%) | ||
| Number | 35 | 254,223 | 54,713 | 81,058 | 39,714 | 5074 | 10,251 | 27,347 | 24,222 | 11,844 | |
| Age | 35 | 65.1 (30.5) | 69.0 (11.7) | 64.6 (51.9) | 66.0 (9.6) | 66.6 (8.2) | 62.8 (6.6) | 63.4 (7.2) | 59.3 (8.1) | 63.7 (12.1) | < 0.0001 |
| Sex, Female (%) | 35 | 117,222 (46.1%) | 21,063 (38.5%) | 39,213 (48.4%) | 14,697 (37.0%) | 2711 (53.4%) | 3952 (38.6%) | 27,347 (100%) | 3916 (16.2%) | 4323 (36.5%) | < 0.0001† |
| Medical History (%) | |||||||||||
| Diabetes | 34 | 51,131 (20.1%) | 7030 (12.9%) | 17,143 (21.2%) | 8897 (22.4%) | 1135 (22.4%) | 10,251 (100%) | 1980 (7.2%) | 1725 (7.1%) | 2970 (25.3%) | < 0.0001‡ |
| Hypertension | 32 | 153,427 (69.6%) | 22,771 (67.0%) | 76,550 (94.5%) | 25,871 (65.2%) | 3212 (63.3%) | – | 8433 (34.0%) | 8141 (33.6%) | 8449 (72.0%) | < 0.0001 |
| Hyperlipidaemia | 17 | 27,627 (29.8%) | 96 (9.6%) | 1019 (15.4%) | 14,757 (37.3%) | 1291 (37.8%) | – | 3366 (13.7%) | 4444 (40.2%) | 2654 (41.7%) | < 0.0001 |
| IHD | 12 | 27,850 (30.6%) | – | 8813 (24.0%) | 6724 (20.7%) | 1970 (38.8%) | – | – | 9014 (100%) | 1329 (17.0%) | < 0.0001¥ |
| Stroke | 28 | 21,645 (12.6%) | 3403 (9.6%) | 5375 (13.9%) | 8707 (23.9%) | 717 (21.0%) | 630 (6.1%) | 306 (1.1%) | 369 (4.1%) | 2138 (18.2%) | < 0.0001 |
| MI | 25 | 22,069 (13.6%) | 5073 (14.4%) | 704 (2.1%) | 2720 (7.7%) | 640 (18.8%) | 1590 (15.5%) | 634 (2.3%) | 10,708 (60.8%) | – | < 0.0001 |
| Smoking, Current | 31 | 48,441 (20.9%) | 7030 (21.0%) | 17,515 (21.9%) | 10,211 (25.8%) | 1471 (29.0%) | 1247 (12.2%) | 2831 (10.5%) | 3496 (14.4%) | 4640 (39.5%) | < 0.0001 |
| Alcohol | 12 | 27,897 (41.3%) | 6373 (34.2%) | 4754 (48.0%) | 10,984 (40.5%) | 561 (33.8%) | – | – | 3098 (46.9%) | 2127 (59.4%) | < 0.0001 |
| SBP | 31 | 145.8 (23.1) | 143.5 (27.1) | 155.2 (19.8) | 147.4 (20.2) | 146.1 (19.3) | – | 128.7 (17.6) | 136.5 (18.8) | 141.5 (20.9) | < 0.0001 |
| DBP | 30 | 83.3 (12.0) | 79.5 (12.8) | 87.7 (11.1) | 84.9 (11.7) | 80.1 (10.0) | – | 76.0 (9.2) | 80.3 (10.4) | 81.6 (12.1) | < 0.0001 |
| HR | 14 | 73.1 (13.7) | 75.1 (15.8) | 77.5 (11.6) | 73.2 (12.4) | 73.1 (10.6) | – | – | 67.8 (11.1) | – | < 0.0001 |
| Qualifying event (%) | |||||||||||
| Stroke | 19 | 71,178 (66.4%) | 19,779 (60.9%) | 5632 (85.2%) | 34,071 (85.8%) | 1571 (46.0%) | – | – | – | 10,125 (86.1%) | < 0.0001 |
| MI | 19 | 25,528 (22.9%) | 12,090 (37.2%) | – | – | – | – | – | 1348 (76.3%) | – | < 0.0001 |
| TIA | 19 | 9979 (9.3%) | 347 (1.1%) | 974 (14.7%) | 5497 (13.8%) | 1759 (51.6%) | – | – | – | 1402 (11.9%) | < 0.0001 |
| OTR | 18 | 91.2 (246.2) | 3.2 (12.9) | 418.0 (439.6) | 31.0 (163.5) | 47.9 (43.6) | – | – | 507.4 (317.0) | 60.2 (178.0) | < 0.0001 |
ACT: anticoagulants; AHT: antihypertensives; APT: antiplatelets; CEA: carotid endarterectomy; DBP: diastolic blood pressure; GL: glucose lowering; HRT: hormone replacement therapy; IHD: ischaemic heart disease; MI: myocardial infarction; HR: heart rate; OTR: onset to randomisation; SBP: systolic blood pressure; TIA: transient ischaemic attack. Percentages (%) are out of the total number of participants with available data. Comparisons by Chi-Square test and ANOVA. †Excluding HRT group. ‡Excluding GL group. ¥Excluding Statins group
Rating of statistical tests
| Outcome | Levels† | Comparator datasets | P | Rating of tests relative to each other | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MWU | Adj. OLR | WR | OLR | BS | Adj. MLR | Adj. BLR | Adj. | TT | CAT | CPH | MT | CSB | CSO | CSF | ||||
| Stroke | 3 | 56 | < 0.0001 | 7 | 9 | 10 | 13 | 12 | 11 | 8 | 14 | 15 | ||||||
| 4 | 23 | < 0.0001 | 10 | 12 | 11 | 13 | 8 | 9 | 14 | 15 | ||||||||
| 5 | 16 | 0.0002 | 12 | 11 | 13 | 10 | 9 | 14 | 15 | |||||||||
| 8 | 12 | 0.0115 | 10 | 13 | 14 | 9 | 11 | 12 | 15 | |||||||||
| Stroke/TIA | 4 | 35 | < 0.0001 | 8 | 10 | 12 | 7 | 11 | 9 | 13 | 14 | 15 | ||||||
| 5 | 17 | < 0.0001 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | |||||||||
| 6 | 13 | < 0.0001 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | |||||||||
| 9 | 12 | < 0.0001 | 7 | 11 | 10 | 8 | 9 | 12 | 14 | 13 | 15 | |||||||
| MI | 3 | 47 | 0.010 | 12 | 11 | 10 | 14 | 13 | 15 | |||||||||
| Bleeding | 3 | 32 | < 0.0001 | 11 | 15 | 14 | 14 | 13 | ||||||||||
| 4 | 26 | 0.035 | 11 | 13 | 14 | 12 | 15 | |||||||||||
| 5 | 13 | 0.032 | 15 | 14 | 13 | |||||||||||||
| Vascular | 3 | 47 | < 0.0001 | 10 | 8 | 11 | 12 | 13 | 9 | 14 | 15 | |||||||
The numbers in bold represent the tests that are the most efficient and do not differ statistically from one another. The P-value is from the results of the Friedman ANOVA. The order of the rating of test is based on the mean rank calculated by the Duncan’s multiple range test; the most efficient test (i.e. the test with the smallest mean rank) is rated the best with a score of 1 and the least efficient with a score of 15
Abbreviations
Adj.: adjusted; BLR: binary logistic regression; BS: bootstrapping; CAT: Cochran-Armitage trend test; CPH: Cox proportional hazards; CSB: Chi-square binary event outcome; CSF: Chi-square binary fatal event outcome; CSO: Chi-square ordinal event outcome; MLR: multiple linear regression; MT: median test; MWU: Mann-Whitney U test; OLR: ordinal logistic regression; TT: t-test; Vascular: combination of stroke and MI; WR: win ratio test
†Defined in Supplementary Table 4.
Results from the Duncan’s test analysis of p-value ranks for 4-level stroke/TIA based on 35 comparator datasets (p < 0.0001)
| Test | Mean rank | |||||||
|---|---|---|---|---|---|---|---|---|
| MWU (4-level) | A | 4.69 | ||||||
| OLR (4-level) | A | B | 6.26 | |||||
| Adj. OLR (4-level) | A | B | C | 6.31 | ||||
| Bootstrapping (4-level) | A | B | C | 6.43 | ||||
| Win Ratio* | A | B | C | 6.69 | ||||
| CA Trend (4-level) | A | B | C | 6.71 | ||||
| t-test (4-level) | B | C | 6.89 | |||||
| Adj. MLR (4-level) | B | C | 6.91 | |||||
| Median test (4-level) | B | C | D | 8.06 | ||||
| Adj. BLR (Binary) | C | D | E | 8.49 | ||||
| CPH (Binary) | D | E | 9.06 | |||||
| Adj. CPH (Binary) | D | E | F | 9.34 | ||||
| Chi-square (Binary) | E | F | 10.37 | |||||
| Chi-square (4-level) | F | G | 11.14 | |||||
| Chi-square (Binary fatal) | G | 12.66 | ||||||
Abbreviations
BLR: binary logistic regression; CA trend: Cochran-Armitage trend test; CPH: Cox proportional hazards model; MLR: multiple linear regression; MWU: Mann-Whitney U test; OLR: ordinal logistic regression
*Combined binary outcomes including (from most to least clinically important): fatal stroke (Yes/No), Non-fatal stroke (Yes/No), and transient ischaemic attack (Yes/No).
Rating of tests by subgroups for stroke/TIA 4-level (35 comparator datasets)
| Subgroup | Comparator datasets | P-value | Rating of tests relative to each other | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MWU | Adj. OLR | WR | OLR | BS | Adj. MLR | Adj. BLR | Adj. CPH | TT | CAT | CPH | MT | CSB | CSO | CSF | |||
| Primary | 15 | < 0.0001 | 9 | 12 | 11 | 10 | 13 | 15 | 14 | ||||||||
| Secondary | 20 | < 0.0001 | 5 | 9 | 10 | 12 | 6 | 8 | 11 | 7 | 14 | 13 | 15 | ||||
| ACT | 10 | 0.0089 | 14 | 13 | 12 | 15 | |||||||||||
| AHT | 6 | 0.011 | 13 | 15 | 14 | ||||||||||||
| APT | 10 | < 0.0001 | 9 | 12 | 11 | 10 | 14 | 13 | 15 | ||||||||
| CEA | 2 | < 0.0001 | 7 | 11 | 14 | 8 | 9 | 13 | 12 | 10 | 15 | ||||||
| HRT | 2 | 0.35 | 4 | 2 | 1 | 5 | 10 | 3 | 12 | 6 | 7 | 8 | 11 | 9 | 13 | 15 | 14 |
| Statins | 4 | 0.0011 | 9 | 12 | 8 | 11 | 7 | 10 | 13 | 14 | 15 | ||||||
The numbers in bold represent the tests are the most efficient and do not differ statistically from one another. The P-value is from the results of the Friedman ANOVA. The order of the rating of test is based on the mean rank calculated by the Duncan’s multiple range test; the most efficient test (i.e. the test with the smallest mean rank) is rated the best with a score of 1 and the least efficient with a score of 15
Abbreviations
ACT: anticoagulants; Adj.: adjusted; AHT: antihypertensives; APT: antiplatelets; BLR: binary logistic regression; BS: bootstrapping; CAT: Cochran-Armitage Trend test; CEA: carotid Endarterectomy; CPH: Cox proportional hazards; CSB: Chi-square binary event outcome; CSF: Chi-square binary fatal event outcome; CSO: Chi-square ordinal event outcome; HRT: hormone replacement therapy; MWU: Mann-Whitney U test; MT: median test; MLR: multiple linear regression; OLR: ordinal logistic regression; TT: t-test; Vascular: combination of stroke and MI; WR: win ratio test
Sample size comparisons (Stroke/TIA 4-level)
| Sample size | Multiplier | |||||||
|---|---|---|---|---|---|---|---|---|
| Dataset | Binary | Ordinal | MWU | t-test | Binary | Ordinal | MWU | t-test |
| 1 | 4528 | 4052 | 1194 | 1196 | 1 | 0.89 | 0.26 | 0.26 |
| 2 | 17,986 | 11,970 | 3326 | 3904 | 1 | 0.67 | 0.18 | 0.22 |
| 3 | 15,292 | 10,072 | 2744 | 2828 | 1 | 0.66 | 0.18 | 0.18 |
| 4 | 5436 | 2382 | 704 | 898 | 1 | 0.44 | 0.13 | 0.17 |
| 5 | 25,090 | 8666 | 2426 | 3362 | 1 | 0.35 | 0.097 | 0.13 |
| 6 | 30,450 | 10,164 | 2958 | 5070 | 1 | 0.33 | 0.097 | 0.17 |
| 13 | 13,510 | 12,610 | 3806 | 3754 | 1 | 0.93 | 0.28 | 0.28 |
| 18 | 23,090 | 22,110 | 6486 | 7194 | 1 | 0.96 | 0.28 | 0.31 |
| 30 | 15,934 | 1582 | 442 | 566 | 1 | 0.099 | 0.028 | 0.036 |
| 31 | 6934 | 1952 | 608 | 802 | 1 | 0.28 | 0.088 | 0.12 |
| 32 | 115,114 | 63,792 | 17,482 | 19,952 | 1 | 0.55 | 0.15 | 0.17 |
| 33 | 15,198 | 10,862 | 3388 | 3450 | 1 | 0.71 | 0.22 | 0.23 |
| 55 | 37,646 | 37,456 | 10,924 | 12,186 | 1 | 0.99 | 0.29 | 0.32 |
| Median (Q1-Q3) | – | – | – | – | – | 0.66 (0.35–0.89) | 0.18 (0.097–0.26) | 0.18 (0.17–0.26) |
Abbreviations
MWU: Mann-Whitney U test; Q1: lower 25% quartile; Q3: upper 75% quartile