| Literature DB >> 34652268 |
Faraaz Ali Shah, Nuala J Meyer, Derek C Angus, Rana Awdish, Élie Azoulay, Carolyn S Calfee, Gilles Clermont, Anthony C Gordon, Arthur Kwizera, Aleksandra Leligdowicz, John C Marshall, Carmen Mikacenic, Pratik Sinha, Balasubramanian Venkatesh, Hector R Wong, Fernando G Zampieri, Sachin Yende.
Abstract
Background: Precision medicine focuses on the identification of therapeutic strategies that are effective for a group of patients based on similar unifying characteristics. The recent success of precision medicine in non-critical care settings has resulted from the confluence of large clinical and biospecimen repositories, innovative bioinformatics, and novel trial designs. Similar advances for precision medicine in sepsis and in the acute respiratory distress syndrome (ARDS) are possible but will require further investigation and significant investment in infrastructure.Entities:
Keywords: acute respiratory distress syndrome; precision medicine; sepsis
Mesh:
Year: 2021 PMID: 34652268 PMCID: PMC8534611 DOI: 10.1164/rccm.202108-1908ST
Source DB: PubMed Journal: Am J Respir Crit Care Med ISSN: 1073-449X Impact factor: 30.528
Figure 1.Conceptual model of the path forward for precision medicine in sepsis and the acute respiratory distress syndrome. EHR = electronic health record.
Current Knowledge Networks and Efforts to Harmonize Data across Observational Studies or Randomized Controlled Trials
| Name | Brief Description | Limitation |
|---|---|---|
| ARDS | ||
| NHLBI BioLINCC ( | Clinical data and biomarkers measured within RCTs testing treatments for ARDS. Biospecimens also may be available | Only includes observational studies and trials that are funded by NHLBI |
| Sepsis | ||
| PHENOMS ( | Prospective observational cohort by the Collaborative Pediatric Critical Care Research Network biobanking samples from pediatric patients with sepsis to examine inflammatory endotypes | Does not include adult patients |
| IBBJ ( | Integrated central biobank merging clinical data and samples from ongoing studies and from three previous sepsis biobanks (SEPNET, Septomics, and CSCC) | Includes German sites only |
| COVID-19 | ||
| ISARIC ( | Global collaborative network established with the goal of generating harmonized clinical data and rapidly disseminating evidence during epidemics | Does not include biospecimens |
| VIRUS ( | International registry collecting clinical data on critically ill patients with COVID-19 | Does not include biospecimens |
| BLUE CORAL | Biobank comprising biospecimen collection and longitudinal epidemiology | Includes U.S. sites only |
| COLOBILI | Biobank comprising biospecimen collection and longitudinal epidemiology | Includes Canadian sites only |
| BBMRI-ERIC ( | Global network connecting researchers to cataloged resources and samples from more than 600 biobanks worldwide | Included biobanks do not have uniform sample collection protocols |
Definition of abbreviations: ARDS = acute respiratory distress syndrome; BBMRI-ERIC = Biobanking and Biomolecular Resources Research Infrastructure–European Research Infrastructure Consortium; BLUE CORAL = Biology and Longitudinal Epidemiology of COVID-19 Observational Study; COLOBILI = COVID-19 Longitudinal Biomarkers in Lung Injury; COVID-19 = coronavirus disease; CSCC = Center for Sepsis Control and Care; IBBJ = Integrated Biobank Jena; ISARIC = International Severe Acute Respiratory and Emerging Infection Consortium; NHLBI BioLINCC = NHLBI Biologic Specimen and Data Repository Information Coordinating Center; PHENOMS = Biomarker Phenotyping of Pediatric Sepsis and Multiple Organ Failure Study; RCT = randomized controlled trial; SEPNET = German Competence Network Sepsis; VIRUS = Viral Infection and Respiratory Illness Universal Study.
Trial Design Strategies for Precision Medicine in Sepsis and Acute Respiratory Distress Syndrome
| Approach | Brief Description |
|---|---|
| Adaptive trial designs | Incorporate prospectively planned modification of one or more aspects of trial design (e.g., sample size, dose, treatments, or study endpoints) based on adaptive analyses |
| Adaptive enrichment | Modification of eligibility criteria to target participants likely to benefit and/or exclude participants unlikely to benefit |
| Biomarker-guided adaptive design | Stratification of participants based on biomarker level with planned modifications based on treatment response within groups |
| Biomarker-threshold adaptive design | Biomarker may predict response to treatment but optimal threshold to guide treatment is not known and is established within the trial |
| Response adaptive randomization | Prior analyses suggest efficacy within several potential subgroups that are examined within the trial with allocation into subgroups changed on the basis of interim analyses |
| Platform trial | Multiple interventions are tested within a single trial framework against a single control arm for a single condition. Therapeutic arms are added or dropped from the trial based on interim analyses |
| Seamless phase 2/3 trials | Rapid transition of a promising phase 2 to a larger phase 3 study facilitating cost-efficient scaling for effective therapies |
| Perpetual trial | Trial framework is established for a condition and new therapies are continually being added or dropped in perpetuity |
| Integration with the electronic health record | Trial procedures including screening, randomization, and deployment of interventions are integrated with the electronic health record, improving efficiency and potentially generalizability |
Potential Statistical Approaches to Improve Use of Knowledge Networks
| Method | Brief Description | Examples |
|---|---|---|
| Subgroup identification | ||
| Unsupervised learning to identify subgroups | Identifies subgroups that are agnostic to treatment allocation and patient outcome. Used to identify phenotypes | Hyperinflammatory and hypoinflammatory phenotypes identified in ARDS ( |
| Supervised learning to identify treatment response subgroups | Identifies variables that predict treatment response (predict individuals who are likely to benefit from or be harmed by a treatment). Subgroups are specific to each treatment | Glucocorticoids therapy for septic shock ( |
| Reinforcement learning to identify patient characteristics that respond to a treatment | Uses patient data to predict dynamic patient states and identify specific treatment decisions over time | Treatment with fluids or vasopressors for septic shock ( |
| Data integration | ||
| Horizontal integration | Normalization of clinical and biomarker data across different studies and biobanks | Harmonization of transcriptomic data in sepsis biobanks ( |
| Vertical integration | Integration of clinical and biologic data across multiple omics platforms in a single study or dataset | Immune phenotyping of patients with COVID-19 ( |
| Inferring causal relationship | ||
| Mendelian randomization | Variation of the instrumental variable technique in which the instrument is one or more genetic variants that predict an intermediate variable (e.g., transcript abundance or protein concentration), and the intermediate may contribute to the outcome | Plasma protein concentrations (Ang-2 or soluble RAGE) contribute to sepsis and ARDS risk ( |
| Mediation analyses | Approach to explain the mechanism by which an explanatory variable influences outcome via a third ‘mediator’ variable. The explanatory variable may be genetic or nonmolecular | Platelet count and trajectory mediate associations between variants in the gene |
Definition of abbreviations: ARDS = acute respiratory distress syndrome; COVID-19 = coronavirus disease.