Literature DB >> 34648133

SMART v1.0: A Database for Small Molecules with Functional Implications in Plants.

Beilei Lei1,2, Minggui Song1,2, Xiyang Li1, Xiaoxue Dang1, Runwen Qin1, Shuai Zhu3, Xiaoyan An3, Qinchang Liu3, Xiaojun Yao4, Yanming Nie5, Chuang Ma6,7.   

Abstract

We developed SMART v1.0 ( http://smart.omicstudio.cloud ), the first database for small molecules with functional implications in plants. The SMART database is devoted to providing and managing small molecules and their associated structural data, chemoinformatic data, protein targets, pathways and induced phenotype/function information. Currently, SMART v1.0 encompasses 1218 unique small molecules which are involved in multiple biological pathways. SMART v1.0 is featured with user-friendly interfaces, through which pathway-centered visualization of small molecules can be efficiently performed, and multiple types of searches (i.e., text search, structure similarity search and sequence similarity search) can be conveniently conducted. SMART v1.0 is also specifically designed to be a small molecule-sharing database, allowing users to release their newly discovered small molecules to public via the Contribute webpage. The SMART database will facilitate the comprehensive understanding of small molecules in complex biological processes in plants.
© 2021. International Association of Scientists in the Interdisciplinary Areas.

Entities:  

Keywords:  Chemical genetics; Database; Pathway; Plant; Small molecule; Target

Mesh:

Year:  2021        PMID: 34648133     DOI: 10.1007/s12539-021-00480-1

Source DB:  PubMed          Journal:  Interdiscip Sci        ISSN: 1867-1462            Impact factor:   2.233


  18 in total

Review 1.  Chemical genetic approaches to plant biology.

Authors:  Helen E Blackwell; Yunde Zhao
Journal:  Plant Physiol       Date:  2003-10       Impact factor: 8.340

Review 2.  Small molecules present large opportunities in plant biology.

Authors:  Glenn R Hicks; Natasha V Raikhel
Journal:  Annu Rev Plant Biol       Date:  2012-01-30       Impact factor: 26.379

3.  ChemMine. A compound mining database for chemical genomics.

Authors:  Thomas Girke; Li-Chang Cheng; Natasha Raikhel
Journal:  Plant Physiol       Date:  2005-06       Impact factor: 8.340

4.  Whole-Seedling-Based Chemical Genetic Screens in Arabidopsis.

Authors:  Shuai Huang; Xin Li
Journal:  Methods Mol Biol       Date:  2021

Review 5.  Plant Chemical Genetics: From Phenotype-Based Screens to Synthetic Biology.

Authors:  Wim Dejonghe; Eugenia Russinova
Journal:  Plant Physiol       Date:  2017-03-08       Impact factor: 8.340

6.  Design and visualization of second-generation cyanoisoindole-based fluorescent strigolactone analogs.

Authors:  Melissa Van Overtveldt; Lukas Braem; Sylwia Struk; Anna M Kaczmarek; François-Didier Boyer; Rik Van Deun; Kris Gevaert; Sofie Goormachtig; Thomas S A Heugebaert; Christian V Stevens
Journal:  Plant J       Date:  2019-02-12       Impact factor: 6.417

7.  Chemical Genetics to Uncover Mechanisms Underlying Lipid-Mediated Signaling Events in Plants.

Authors:  Bibi Rafeiza Khan; Kent D Chapman; Elison B Blancaflor
Journal:  Methods Mol Biol       Date:  2021

8.  R-BIND: An Interactive Database for Exploring and Developing RNA-Targeted Chemical Probes.

Authors:  Brittany S Morgan; Bilva G Sanaba; Anita Donlic; Diane B Karloff; Jordan E Forte; Yuqi Zhang; Amanda E Hargrove
Journal:  ACS Chem Biol       Date:  2019-10-29       Impact factor: 5.100

9.  EpiDBase: a manually curated database for small molecule modulators of epigenetic landscape.

Authors:  Saurabh Loharch; Isha Bhutani; Kamal Jain; Pawan Gupta; Debendra K Sahoo; Raman Parkesh
Journal:  Database (Oxford)       Date:  2015-03-16       Impact factor: 3.451

10.  Selective auxin agonists induce specific AUX/IAA protein degradation to modulate plant development.

Authors:  Thomas Vain; Sara Raggi; Noel Ferro; Deepak Kumar Barange; Martin Kieffer; Qian Ma; Siamsa M Doyle; Mattias Thelander; Barbora Pařízková; Ondřej Novák; Alexandre Ismail; Per-Anders Enquist; Adeline Rigal; Małgorzata Łangowska; Sigurd Ramans Harborough; Yi Zhang; Karin Ljung; Judy Callis; Fredrik Almqvist; Stefan Kepinski; Mark Estelle; Laurens Pauwels; Stéphanie Robert
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-08       Impact factor: 11.205

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