Literature DB >> 15955920

ChemMine. A compound mining database for chemical genomics.

Thomas Girke1, Li-Chang Cheng, Natasha Raikhel.   

Abstract

Entities:  

Keywords:  NASA Discipline Cell Biology; Non-NASA Center

Mesh：

Year:  2005        PMID： 15955920      PMCID： PMC1150377          DOI： 10.1104/pp.105.062687

Source DB:  PubMed          Journal:  Plant Physiol        ISSN： 0032-0889            Impact factor:   8.340


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  26 in total

1.  Enhanced CACTVS browser of the Open NCI Database.

Authors:  Wolf-Dietrich Ihlenfeldt; Johannes H Voigt; Bruno Bienfait; Frank Oellien; Marc C Nicklaus
Journal:  J Chem Inf Comput Sci       Date:  2002 Jan-Feb

Review 2.  Chemical space navigation in lead discovery.

Authors:  Tudor I Oprea
Journal:  Curr Opin Chem Biol       Date:  2002-06       Impact factor: 8.822

3.  Performance of similarity measures in 2D fragment-based similarity searching: comparison of structural descriptors and similarity coefficients.

Authors:  Xin Chen; Charles H Reynolds
Journal:  J Chem Inf Comput Sci       Date:  2002 Nov-Dec

4.  Open source clustering software.

Authors:  M J L de Hoon; S Imoto; J Nolan; S Miyano
Journal:  Bioinformatics       Date:  2004-02-10       Impact factor: 6.937

Review 5.  Ligand.Info small-molecule Meta-Database.

Authors:  Marcin von Grotthuss; Grzegorz Koczyk; Jakub Pas; Lucjan S Wyrwicz; Leszek Rychlewski
Journal:  Comb Chem High Throughput Screen       Date:  2004-12       Impact factor: 1.339

Review 6.  Navigating chemical space for biology and medicine.

Authors:  Christopher Lipinski; Andrew Hopkins
Journal:  Nature       Date:  2004-12-16       Impact factor: 49.962

7.  ZINC--a free database of commercially available compounds for virtual screening.

Authors:  John J Irwin; Brian K Shoichet
Journal:  J Chem Inf Model       Date:  2005 Jan-Feb       Impact factor: 4.956

8.  The power of chemical genomics to study the link between endomembrane system components and the gravitropic response.

Authors:  Marci Surpin; Marcela Rojas-Pierce; Clay Carter; Glenn R Hicks; Jacob Vasquez; Natasha V Raikhel
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-16       Impact factor: 11.205

9.  Sorting inhibitors (Sortins): Chemical compounds to study vacuolar sorting in Arabidopsis.

Authors:  Jan Zouhar; Glenn R Hicks; Natasha V Raikhel
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-09       Impact factor: 11.205

10.  Cluster analysis and display of genome-wide expression patterns.

Authors:  M B Eisen; P T Spellman; P O Brown; D Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-08       Impact factor: 11.205
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  26 in total

1.  Powerful partners: Arabidopsis and chemical genomics.

Authors:  Stéphanie Robert; Natasha V Raikhel; Glenn R Hicks
Journal:  Arabidopsis Book       Date:  2009-01-21

2.  Targeting the ubiquitin-conjugating enzyme E2D4 for cancer drug discovery-a structure-based approach.

Authors:  Vishwanath Ramatenki; Ramakrishna Dumpati; Rajender Vadija; Santhiprada Vellanki; Sarita Rajender Potlapally; Rohini Rondla; Uma Vuruputuri
Journal:  J Chem Biol       Date:  2016-12-24

3.  Opportunities and challenges in plant chemical biology.

Authors:  Glenn R Hicks; Natasha V Raikhel
Journal:  Nat Chem Biol       Date:  2009-05       Impact factor: 15.040

4.  Accelerated similarity searching and clustering of large compound sets by geometric embedding and locality sensitive hashing.

Authors:  Yiqun Cao; Tao Jiang; Thomas Girke
Journal:  Bioinformatics       Date:  2010-02-23       Impact factor: 6.937

5.  Application of kernel functions for accurate similarity search in large chemical databases.

Authors:  Xiaohong Wang; Jun Huan; Aaron Smalter; Gerald H Lushington
Journal:  BMC Bioinformatics       Date:  2010-04-29       Impact factor: 3.169

6.  Homology modeling and virtual screening studies of FGF-7 protein-a structure-based approach to design new molecules against tumor angiogenesis.

Authors:  Rajender Vadija; Kiran Kumar Mustyala; Navaneetha Nambigari; Ramasree Dulapalli; Rama Krishna Dumpati; Vishwanath Ramatenki; Santhi Prada Vellanki; Uma Vuruputuri
Journal:  J Chem Biol       Date:  2016-06-18

7.  ChemmineR: a compound mining framework for R.

Authors:  Yiqun Cao; Anna Charisi; Li-Chang Cheng; Tao Jiang; Thomas Girke
Journal:  Bioinformatics       Date:  2008-07-02       Impact factor: 6.937

8.  wwLigCSRre: a 3D ligand-based server for hit identification and optimization.

Authors:  O Sperandio; M Petitjean; P Tuffery
Journal:  Nucleic Acids Res       Date:  2009-05-08       Impact factor: 16.971

9.  A maximum common substructure-based algorithm for searching and predicting drug-like compounds.

Authors:  Yiqun Cao; Tao Jiang; Thomas Girke
Journal:  Bioinformatics       Date:  2008-07-01       Impact factor: 6.937

10.  Ligand scaffold hopping combining 3D maximal substructure search and molecular similarity.

Authors:  Flavien Quintus; Olivier Sperandio; Julien Grynberg; Michel Petitjean; Pierre Tuffery
Journal:  BMC Bioinformatics       Date:  2009-08-11       Impact factor: 3.169
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