Literature DB >> 3463995

Importance of a hydrophobic residue in binding and catalysis by dihydrofolate reductase.

R J Mayer, J T Chen, K Taira, C A Fierke, S J Benkovic.   

Abstract

A conserved residue at the dihydrofolate binding site of dihydrofolate reductase (EC 1.5.1.3), leucine-54, was replaced with glycine to ascertain the role of this hydrophobic amino acid. The effect of the mutation is both to increase the dissociation rate of dihydrofolate and decrease the rate of hydride transfer thus changing the rate-limiting step in catalysis from product loss (leucine-54) to hydride transfer (glycine-54). The total stabilization by leucine-54 of the transition state for hydride transfer is ca. 10(4)-fold (delta delta G approximately 5.4 kcal/mol) at subsaturating dihydrofolate levels relative to free enzyme despite its location some 10 A from the site of chemical reaction.

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Year:  1986        PMID: 3463995      PMCID: PMC386792          DOI: 10.1073/pnas.83.20.7718

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

1.  Kinetics of ligand binding to dihydrofolate reductase: binary complex formation with NADPH and coenzyme analogues.

Authors:  S M Dunn; J G Batchelor; R W King
Journal:  Biochemistry       Date:  1978-06-13       Impact factor: 3.162

2.  Active-site mutants of beta-lactamase: use of an inactive double mutant to study requirements for catalysis.

Authors:  G Dalbadie-McFarland; J J Neitzel; J H Richards
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3.  Transient state kinetic analysis of the ATP-induced dissociation of the dynein-microtubule complex.

Authors:  M E Porter; K A Johnson
Journal:  J Biol Chem       Date:  1983-05-25       Impact factor: 5.157

4.  The solubility of amino acids and two glycine peptides in aqueous ethanol and dioxane solutions. Establishment of a hydrophobicity scale.

Authors:  Y Nozaki; C Tanford
Journal:  J Biol Chem       Date:  1971-04-10       Impact factor: 5.157

5.  Oligonucleotide-directed mutagenesis as a general and powerful method for studies of protein function.

Authors:  G Dalbadie-McFarland; L W Cohen; A D Riggs; C Morin; K Itakura; J H Richards
Journal:  Proc Natl Acad Sci U S A       Date:  1982-11       Impact factor: 11.205

6.  Crystal structures of Escherichia coli and Lactobacillus casei dihydrofolate reductase refined at 1.7 A resolution. I. General features and binding of methotrexate.

Authors:  J T Bolin; D J Filman; D A Matthews; R C Hamlin; J Kraut
Journal:  J Biol Chem       Date:  1982-11-25       Impact factor: 5.157

7.  Crystal structures of Escherichia coli and Lactobacillus casei dihydrofolate reductase refined at 1.7 A resolution. II. Environment of bound NADPH and implications for catalysis.

Authors:  D J Filman; J T Bolin; D A Matthews; J Kraut
Journal:  J Biol Chem       Date:  1982-11-25       Impact factor: 5.157

8.  Kinetics of substrate, coenzyme, and inhibitor binding to Escherichia coli dihydrofolate reductase.

Authors:  P J Cayley; S M Dunn; R W King
Journal:  Biochemistry       Date:  1981-02-17       Impact factor: 3.162

9.  The pH-dependence of the binding of dihydrofolate and substrate analogues to dihydrofolate reductase from Escherichia coli.

Authors:  S R Stone; J F Morrison
Journal:  Biochim Biophys Acta       Date:  1983-06-29

10.  Kinetic mechanism of the reaction catalyzed by dihydrofolate reductase from Escherichia coli.

Authors:  S R Stone; J F Morrison
Journal:  Biochemistry       Date:  1982-08-03       Impact factor: 3.162

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Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-10       Impact factor: 11.205

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Review 5.  Protein engineering. The design, synthesis and characterization of factitious proteins.

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Journal:  Biochem J       Date:  1987-08-15       Impact factor: 3.857

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Journal:  PLoS One       Date:  2012-05-31       Impact factor: 3.240

7.  Effects of Non-Natural Amino Acid Incorporation into the Enzyme Core Region on Enzyme Structure and Function.

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  7 in total

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