| Literature DB >> 34637583 |
Bo-Wen Yin1,2,3, Bin Li1,2, Arshad Mehmood1,2, Congcong Yuan1,2, Shuang Song1,2, Ruo-Yi Guo1,2, Lu Zhang1,2, Tianzhao Ma1,2, Li Guo1,2.
Abstract
AIM: This study aimed to determine the correlation between B-lymphoid tyrosine kinase (BLK) polymorphism, mRNA gene expression of BLK, and NMOSD in a Chinese Han population.Entities:
Keywords: B-lymphoid tyrosine kinase; mRNA; neuromyelitis optica spectrum disorder; rs2248932; single nucleotide polymorphisms
Mesh:
Substances:
Year: 2021 PMID: 34637583 PMCID: PMC8611770 DOI: 10.1111/cns.13738
Source DB: PubMed Journal: CNS Neurosci Ther ISSN: 1755-5930 Impact factor: 5.243
SNPs in BLK and primer sequences used for PCR amplification
| Rs_num | SNP substitution | Chr | Chr_Position | Primer sequence |
|---|---|---|---|---|
| rs13277113 | G > A | 8 | NC_000008.11:g.11491677 | F: GCAAGATGTCCGTAGACTCA |
| R: GATTCACCTCAGAAGGGTCTA | ||||
| rs4840568 | G > A | 8 | NC_000008.11:g.11493510 | F: GAAATGAACTCCTTGAGAAAG |
| R: AGTGTCTTGATATTGGCTTAT | ||||
| rs2248932 | A > G | 8 | NC_000008.11:g.11534141 | F: AATGCAGATACCAGCACT |
| R: CCAATGGAGTCAGTTATGATT |
Demographics and clinical characteristics of participants
| NMOSD | HCs |
| |
|---|---|---|---|
| Gender, female/male ( | 109:12 (90.08 %) | 170:19 (89.94%) | 0.969 |
| Age, year (mean ± SD) | 44.64 ± 16.10 | 44.92 ± 10.07 | 0.851 |
| Age at onset, year (mean ± SD) | 42.93 ± 16.790 | NA | NA |
| AQP4‐IgG | 107/121 (88.4) | ||
| Seropositive | 93/107 (86.9) | NA | NA |
| Seronegative | 14/107 (13.1) | NA | NA |
| Onset syndromes | |||
| Optic neuritis | 22/121 (18.2) | NA | NA |
| Acute myelitis | 41/121 (33.9) | NA | NA |
| Brain attacks | 5/121 (4.1) | NA | NA |
| Mix attacks | 53/121 (43.8) | NA | NA |
Abbreviations: NA, not applicable; SD, standard deviation.
Data on AQP4‐IgG was available for 107 patients.
Data on clinical syndromes were available for 121 patients; brain attacks include brainstem and brain attacks.
Data of quality evaluation for genotyping
| SNP Groups | Test of HWE | MAF (present‐study data) | MAF (CHB) | ||
|---|---|---|---|---|---|
| ( | Allele | Frequencies | |||
| rs13277113 | NMOSD | 0.250 | G | 0.290 | 0.252 |
| Control | 0.538 | G | |||
| rs4840568 | NMOSD | 0.299 | G | 0.290 | 0.252 |
| Control | 0.971 | G | |||
| rs2248932 | NMOSD | 0.982 | G | 0.267 | 0.223 |
| Control | 0.325 | G | |||
Abbreviations: CHB, Han Chinese in Beijing; MAF, minor allele frequency.
Allelic and genotypic frequencies of the BLK three‐SNP association analysis in NMOSD and controls
| Gene SNP | Model | Genotype | HCs | NMOSD | OR |
|
|---|---|---|---|---|---|---|
|
|
| (95% CI) | ||||
| rs13277113 A/G | Alleles | A | 262 ( 0.693) | 178 ( 0.736) | 1 | 0.26 |
| G | 116 ( 0.307) | 64 ( 0.264) | O.81 (0.57~1.16) | |||
| Codominant | A/A | 89 (0.471) | 63 (0.521) | 1 | 0.41 | |
| A/G | 84 (0.444) | 52 (0.430) | 0.88 (0.55‐1.42) | |||
| G/G | 16 (0.085) | 6 (0.050) | 0.52 (0.19‐1.42) | |||
| Dominant | A/A | 89 (0.471) | 63 (0.521) | 1 | 0.40 | |
| A/G‐G/G | 100 (0.529) | 58 (0.479) | 0.82 (0.52‐1.30) | |||
| Recessive | A/A‐A/G | 173 (0.915) | 115 (0.95) | 1 | 0.22 | |
| G/G | 16 (0.085) | 6 (0.05) | 0.55 (0.21‐1.47) | |||
| Overdominant | A/A‐G/G | 105 (0.556) | 69 (0.570) | 1 | 0.82 | |
| A/G | 84 (0.444) | 52 (0.430) | 0.95 (0.60‐1.51) | |||
| rs4840568 A/G | Alleles | A | 261 (0.690) | 179 (0.740) | 1 | 0.19 |
| G | 117 (0.310) | 63 (0.260) | 0.79 (0.55‐1.13) | |||
| Codominant | A/A | 90 (0.476) | 64 (0.529) | 1 | 0.27 | |
| A/G | 81 (0.429) | 51 (0.421) | 0.89 (0.55‐1.44) | |||
| G/G | 18 (0.095) | 6 (0.050) | 0.46 (0.17‐1.23) | |||
| Dominant | A/A | 90 (0.476) | 64 (0.529) | 1 | 0.37 | |
| A/G‐G/G | 99 (0.524) | 57 (0.471) | 0.81 (0.51‐1.28) | |||
| Recessive | A/A‐A/G | 171 (0.905) | 115 (0.950) | 1 | 0.12 | |
| G/G | 18 (0.095) | 6 (0.050) | 0.49 (0.19‐1.27) | |||
| Overdominant | A/A‐G/G | 108 (0.571) | 70 (0.579) | 1 | 0.92 | |
| A/G | 81 (0.429) | 51 (0.421) | 0.98 (0.61‐1.56) | |||
| rs2248932 | Alleles | A | 261 (0.690) | 193 (0.798) | 1 | 0.003 |
| G | 117 (0.310) | 49 (0.202) | 0.57 (0.39‐0.83) | |||
| Codominant | A/A | 93 (0.492) | 77 (0.636) | 1 | 0.014 | |
| A/G | 75 (0.397) | 39 (0.322) | 0.63 (0.38‐1.03) | |||
| G/G | 21 (0.111) | 5 (0.041) | 0.29 (0.10‐0.80) | |||
| Dominant | A/A | 93 (0.492) | 77 (0.636) | 1 | 0.012 | |
| A/G‐G/G | 96 (0.508) | 44 (0.364) | 0.55 (0.35‐0.88) | |||
| Recessive | A/A‐A/G | 168 (0.889) | 116 (0.959) | 1 | 0.023 | |
| G/G | 21 (0.111) | 5 (0.041) | 0.34 (0.13‐0.94) | |||
| Overdominant | A/A‐G/G | 114 (0.603) | 82 (0.678) | 1 | 0.18 | |
| A/G | 75 (0.397) | 39 (0.322) | 0.72 (0.45‐1.17) |
The results of genotypic frequencies using logistic regression analyses were adjusted by age and sex.
Abbreviations: CI, confidence intervals; HCs, healthy controls; NMOSD, neuromyelitis optica spectrum disorders; OR, odds ratios.
FIGURE 1Linkage disequilibrium (LD) patterns in BLK. D′ (A) and r 2 (B) mean LD coefficients of the three SNPs. Each block represents the LD relationship between two SNPs. The rs13277113 and rs4840568 variants exhibited strong LD for both D′ and r 2 > 0.9. Rs2248932 indicated moderate LD with rs13277113 and rs4840568, respectively (D′ =0.75, r 2 = 0.50)
Haplotype analysis of BLK polymorphisms in NMOSD and controls
| Haplotype | Case (%) | HCs (%) | Chi‐square |
| OR (95% CI) |
|---|---|---|---|---|---|
| A A A | 0.709 | 0.629 | 4.596 | 0.032 | 1.467 (1.033‐2.085) |
| A A G | 0.023 | 0.059 | 4.477 | 0.034 | 0.373 (0.144‐0.962) |
| G G A | 0.080 | 0.057 | 1.338 | 0.247 | 1.452 (0.769‐2.742) |
| G G G | 0.176 | 0.247 | 4.288 | 0.038 | 0.652 (0.435‐0.979) |
Logistic chosen for haplotype analysis: rs13277113, rs4840568, and rs2248932.
Stratification analysis for AQP4‐positivity: allelic and genotypic frequencies of the BLK three‐SNP association analysis in AQP4‐positive subgroup and controls
| Gene SNP | Model | Genotype |
HCs
(%) |
AQP4‐positive subgroup
(%) | OR (95% CI) |
|
|---|---|---|---|---|---|---|
| rs13277113 A/G | Alleles | A | 262 (0.693) | 140 (0.753) | 1 | 0.14 |
| G | 116 (0.307) | 46 (0.247) | 0.74 (0.50~1.11) | |||
| Codominant | A/A | 89 (0.471) | 50 (0.538) | 1 | 0.15 | |
| A/G | 84 (0.444) | 40 (0.430) | 0.86 (0.51‐1.44) | |||
| G/G | 16 (0.085) | 3 (0.032) | 0.32 (0.09‐1.15) | |||
| Dominant | A/A | 89 (0.471) | 50 (0.538) | 1 | 0.30 | |
| A/G‐G/G | 100 (0.529) | 43 (0.462) | 0.77 (0.46‐1.26) | |||
| Recessive | A/A‐A/G | 173 (0.915) | 90 (0.968) | 1 | 0.07 | |
| G/G | 16 (0.085) | 3 (0.032) | 0.34 (0.10‐1.21) | |||
| Overdominant | A/A‐G/G | 105 (0.556) | 53 (0.570) | 1 | 0.87 | |
| A/G | 84 (0.444) | 40 (0.430) | 0.96 (0.58‐1.59) | |||
| rs4840568 A/G | Alleles | A | 261 (0.690) | 141 (0.758) | 1 | 0.10 |
| G | 117 (0.310) | 45 (0.242) | 0.71 (0.48‐1.06 ) | |||
| Codominant | A/A | 90 (0.476) | 51 (0.548) | 1 | 0.09 | |
| A/G | 81 (0.429) | 39 (0.419) | 0.86 (0.5‐1.45) | |||
| G/G | 18 (0.095) | 3 (0.032) | 0.28 (0.08‐1.00) | |||
| Dominant | A/A | 90 (0.476) | 51 (0.548) | 1 | 0.26 | |
| A/G‐G/G | 99 (0.524) | 42 (0.452) | 0.75 (0.45‐1.24) | |||
| Recessive | A/A‐A/G | 171 (0.905) | 90 (0.968) | 1 | 0.03 | |
| G/G | 18 (0.095) | 3 (0.032) | 0.30 (0.09‐1.05) | |||
| Overdominant | A/A‐G/G | 108 (0.571) | 54 (0.581) | 1 | 0.94 | |
| A/G | 81 (0.429) | 39 (0.419) | 0.98 (0.61‐1.56) | |||
| rs2248932 | Alleles | A | 261 (0.690) | 154 (0.828) | 1 | 0.001 |
| G | 117 (0.310) | 32 (0.172) | 0.46 (0.30‐0.72) | |||
| Codominant | A/A | 93 (0.492) | 62 (0.667) | 1 | 5×10‐4 | |
| A/G | 75 (0.397) | 30 (0.323) | 0.60 (0.35‐1.02) | |||
| G/G | 21 (0.111) | 1 (0.011) | 0.07 (0.01‐0.54) | |||
| Dominant | A/A | 93 (0.492) | 62 (0.667) | 1 | 0.005 | |
| A/G‐G/G | 96 (0.508) | 31 (0.333) | 0.48 (0.29‐0.81) | |||
| Recessive | A/A‐A/G | 168 (0.889) | 92 (0.989) | 1 | 7 × 10‐4 | |
| G/G | 21 (0.111) | 1 (0.011) | 0.09 (0.01‐0.66) | |||
| Overdominant | A/A‐G/G | 114 (0.603) | 63 (0.667) | 1 | 0.22 | |
| A/G | 75 (0.397) | 30 (0.323) | 0.72 (0.43‐1.22) |
Association of BLK rs13277113, rs4840568, and rs2248932 with clinical characteristics of patients with NMOSD
| Clinical characteristics | rs13277113 | rs4840568 | rs2248932 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AA | AG | GG | P | AA | AG | GG | P | AA | AG | GG | P | |
|
AQP4‐IgG positive
| 50 | 40 | 3 | 0.066 | 51 | 39 | 3 | 0.068 | 62 | 30 | 1 | 0.003 |
| (53.8) | (0.43) | (3.2) | (54.8) | (41.9) | (3.2) | (66.7) | (32.3) | (1.1) | ||||
|
AQP4‐IgG negative
| 7 | 4 | 3 | 7 | 4 | 3 | 10 | 1 | 3 | |||
| (50.0) | (28.6) | (21.4) | (50) | (28.6) | (21.4) | (71.4) | (7.1) | (21.4) | ||||
| OR (95% CI) | 1 | 1.4 | 0.14 | 1 | 1.34 | 0.14 | 1 | 4.84 | 0.05 | |||
| (0.38‐5.12) | (0.02‐0.83) | (0.37‐4.90) | (0.02‐0.82) | (0.59‐39.57) | (0.01‐0.57) | |||||||
| Onset syndromes, | ||||||||||||
| Optic neuritis | 12 | 10 | 0 | 0.893 | 12 | 10 | 0 | 0.911 | 16 | 6 | 0 | 0.363 |
| (54.5) | (45.5) | (0.0) | (54.5) | (45.5) | (0.0) | (72.7) | (27.3) | (0.0) | ||||
| Acute myelitis | 20 | 18 | 3 | 22 | 16 | 3 | 23 | 17 | 1 | |||
| (48.8) | (43.9) | (7.3) | (53.7) | (39) | (7.3) | (56.1) | (41.5) | (2.4) | ||||
| Brain attacks | 2 | 3 | 0 | 2 | 3 | 0 | 5 | 0 | 0 | |||
| (40.0) | (60.0) | (0.0) | (40.0) | (60.0) | (0.0) | (100.0) | (0.0) | (0.0) | ||||
| Mix attacks | 29 | 21 | 3 | 28 | 22 | 3 | 33 | 16 | 4 | |||
| (54.7) | (39.6) | (5.7) | (52.8) | (41.5) | (5.7) | (62.3) | (30.2) | (7.5) | ||||
FIGURE 2BLK mRNA levels in peripheral blood mononuclear cells (PBMCs) were determined by the 2−ΔΔCt method using GAPDH as a reference gene. P‐value was calculated by comparisons of individuals’ relative expression using the 2−ΔΔCt method. RT‐PCR determined the relative quantification (RQ) of the BLK mRNA expression level in PBMCs of HCs and the NMOSD patients. (A) BLK mRNA expressions were decreased in the total NMOSD patients (n = 36) compared with healthy controls (n = 28) (p = 0.025). (B) BLK mRNA expressions were 1.8‐fold higher in the acute untreated group (n = 7) than in healthy controls (n = 8) (p = 0.040). *p < 0.05 by nonparametric Mann‐Whitney U test (non‐normality). HCs, healthy controls; ANT, acute non‐treatment; Each p‐value was corrected for age and sex
FIGURE 3There were 3 groups divided in the 36 NMOSD patients: ANT, acute non‐treatment (n = 7); AOGC, acute long‐term oral glucocorticoids group (n = 20); and remission group (n = 9). The BLK expression levels were ranked in the 3 groups in order from high to low: ANT >AOGC > remission group. The BLK mRNA expression levels in ANT were higher compared with the other two groups (p = 0.0135). It was statistically different in ANT compared with the remission group (p = 0.0146). Although, there was no statistical difference in the AOGC compared to the remission group, and the trend is higher in the AOGC group (p = 0.0755). *p < 0.05 and ns (not significant) using Kruskal‐Wallis test with Dunn's correction (non‐normality) for three groups comparison test. Each p‐value was corrected for age and sex
FIGURE 4The BLK mRNA expression levels in different genotypes of rs13277113, rs4840568, and rs2248932 in the NMOSD patients. (A), (B), (C) The 31 subjects from the cases group were analyzed, including rs13277113 (AA 17, AG 15, GG 0), rs4840568 (AA 17, AG 15, GG 0), and rs2248932 (AA 22, AG 10, GG 0). Mann‐Whitney U test (non‐normality) was applied for the statistical analysis. Significant differences were not observed in BLK mRNA expression levels in the NMOSD patients with different genotypes (p > 0.05). Each p‐value was corrected for age and sex