Literature DB >> 34636164

Analysis of PLXNA1, NRP1, and NRP2 variants in a cohort of patients with isolated hypogonadotropic hypogonadism.

Meichao Men1,2, Dan-Na Chen3, Jia-Da Li4,5,6, Xinying Wang4,5,6, Wang Zeng4,5,6, Fang Jiang4,5,6, Ruizhi Zheng7, Wenting Dai1.   

Abstract

BACKGROUND: Isolated hypogonadotropic hypogonadism (IHH) is a clinical syndrome described by failure of gonadal function secondary to defects on the synthesis, secretion, or action of the gonadotropin-releasing hormone (GnRH). The secreted glycoprotein SEMA3A binds its receptors NRP1 or NRP2 and PLXNA to participate in axonal projection, dendritic branching, synaptic formation, and neuronal migration. Deficiency in SEMA3A, NRP1, NRP2, and PLXNA1 have been related to abnormal GnRH neuron development in mice and IHH in humans.
METHODS: The aim of this study was to examine the genotypic and phenotypic spectra of the NRP1, NRP2, and PLXNA1 genes in a large cohort of IHH probands from China. We screened NRP1, NRP2, and PLXNA1 variants in Chinese IHH patients by whole exome sequencing and pedigree analysis.
RESULTS: We identified 10 heterozygous missense variants in PLXNA1, five heterozygous missense variants in NRP1, and two heterozygous missense variants in NRP2. NRP1 variants were found only in IHH patients with defective olfaction (i.e., Kallmann syndrome, KS). In addition, 85% (17/20) of patients harbored variants in other IHH-associated genes.
CONCLUSION: Our study greatly enriched the genotypic and phenotypic spectra of PLXNA1, NRP1, and NRP2 in IHH. It may be conducive to the genetic counseling, diagnosis, and treatment of IHH with mutations in the PLXNA1, NRP1, and NRP2 genes. Furthermore, our results indicated that NRP1 were strongly linked to hearing loss.
© 2021 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals LLC.

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Keywords:  zzm321990NRP1zzm321990; zzm321990NRP2zzm321990; zzm321990PLXNA1zzm321990; idiopathic hypogonadotropic hypogonadism; whole exome sequencing

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Year:  2021        PMID: 34636164      PMCID: PMC8606218          DOI: 10.1002/mgg3.1816

Source DB:  PubMed          Journal:  Mol Genet Genomic Med        ISSN: 2324-9269            Impact factor:   2.183


INTRODUCTION

Isolated hypogonadotropic hypogonadism (IHH) is a rare disease described by gonadal failure due to the deficiency in gonadotropin‐releasing hormone (GnRH) synthesis, secretion, or action (Beate et al., 2012; Boehm et al., 2015; Topaloglu & Kotan, 2016). IHH patients are often accompanied with other developmental abnormalities, such as cleft lip and palate, tooth hypoplasia, ear deformity, congenital hearing impairment, renal hypoplasia, bilateral synkinesis, or skeletal abnormalities. About half of IHH patients have lost or low sense of smell, which is called Kallmann syndrome (KS), while IHH with normal smell is called normosic IHH (nIHH; Kim, 2015). To date, over 40 genes have been found to be associated with IHH. However, variants in all the known IHH‐associated genes could only make molecular diagnosis for about 50% IHH patients. SEMA3A, encoding Semaphorin 3A, has been proved to be one of the pathogenic genes for IHH (Hanchate et al., 2012; Kansakoski et al., 2014; Young et al., 2012). SEMA3A is essential for the development of the GnRH neurons, and loss of SEMA3A signaling alters the targeting of vomeronasal nerves and the migration of GnRH neurons into the brain, resulting in reduced gonadal size in mice (Cariboni et al., 2011). The receptors for SEMA3A, including NRP1 (OMIM accession number: 602069) or NRP2 (OMIM accession number: 602070) and PLXNA1 (OMIM accession number: 601055), are present along the vomeronasal/terminal nerve pathway, suggesting their involvement in the guidance of migrating GnRH cells (Marcos et al., 2017). As a receptor of SEMA3A, PLXNA1 consists of extracellular signal domain (SEMA), cysteine rich motif and conserved intracellular specific plexin (SP) domain (Figure 1). Marcos et al. (2017) found that the development of peripheral olfactory system in the Plxna1 −/− mutant mice was abnormal, and the migration of GnRH neurons to hypothalamus was defective, which led to the decline of reproductive ability of adult male mice. Oleari et al. (2019) found that the migration of GnRH neurons to the forebrain was reduced in the Plxna1 −/−/Plxna3 −/− mice, and the gonadal and olfactory systems of the Plxna1 −/−/Plxna3 −/− mice were defective. Until now, 21 PLXNA1 variants have been identified in the IHH patients (Kotan et al., 2019; Marcos et al., 2017). And seven PLXNA1 variants was proved to be pathogenic through functional experiments (Marcos et al., 2017).
FIGURE 1

Schematic representation of the PLXNA1, NRP1, and NRP2 protein, showing the positions of the missense variants found in IHH patients. Abbreviations are as follows: sema, semaphorin domain; PSI, plexin/semaphorin/integrin domain; IPT, immunoglobulin‐like fold in plexins/transcription factors; TM, transmembrane domain; GAP1, Ras GTPase‐activating protein domain; RBD, Rho family GTPase‐binding domain. CUB, complement components C1r and C1s/uEGF/BMP‐1; CF5 and CF8, coagulation factors V and VIII; MAM, meprin/A5 antigen/receptor‐like protein tyrosine phosphatase μ

Schematic representation of the PLXNA1, NRP1, and NRP2 protein, showing the positions of the missense variants found in IHH patients. Abbreviations are as follows: sema, semaphorin domain; PSI, plexin/semaphorin/integrin domain; IPT, immunoglobulin‐like fold in plexins/transcription factors; TM, transmembrane domain; GAP1, Ras GTPase‐activating protein domain; RBD, Rho family GTPase‐binding domain. CUB, complement components C1r and C1s/uEGF/BMP‐1; CF5 and CF8, coagulation factors V and VIII; MAM, meprin/A5 antigen/receptor‐like protein tyrosine phosphatase μ As co‐receptors for SEMA3A, NRP1/NRP2 are transmembrane proteins with a large extracellular domain, a single transmembrane domain and a very short cytoplasmic domain (Figure 1). Gu et al. (2002) found that NRP1 binds to the SEMA domain of SEMA3A and plays an important role in the repulsive axon guidance mediated by SEMA3A. Moreover, Nrp1 mutant mice show defects in spinal cord and cranial nerve projection, and die of severe cardiovascular dysfunction in the second trimester of pregnancy (Kawasaki et al., 1999). Furthermore, Cariboni et al. (2011) found that the number of GnRH neurons in hypothalamus of Nrp2 −/− mice was significantly reduced, the volume of gonad was significantly reduced, and the abnormal increase of GnRH neurons in nose of Nrp2 −/− mice. Marcos et al. (2017) found three heterozygous NRP1 missense variants and three heterozygous NRP2 missense variants in 250 KS patients. However, the variants of NRP1/2 have not been reported in Asian IHH patients yet. Our aim of the current work was to investigate whether variants in PLXNA1, NRP1, and NRP2 are present in Chinese patients with IHH.

MATERIALS AND METHODS

Patients

This study included 196 unrelated IHH patients (161 males and 35 females with a mean age at diagnosis of 21.9 years). All probands (126 with KS and 70 with nIHH) were recruited at the People's Hospital of Henan Province (Zhengzhou, China), Xiangya Hospital (Changsha, China). The patients or their adult parents signed an informed consent form. The research concerning human samples have been approved by the ethics committee of School of Life Sciences, Central South University (No. 2017030801). IHH was diagnosed as KS or nIHH according to standard criteria (Pitteloud et al., 2002). Olfactory function, the brain, olfactory bulb structures, fundus lenses, and color atlas were examined as described previously (Dai et al., 2019). Fundus lenses and color atlas were used if necessary.

Whole exome sequencing

Whole exome sequencing was performed on the IHH probands. The detailed whole exome sequencing methods and bioinformatics procedures have been described previously (Dai et al., 2019). ExomeDepth algorithm was used for copy number variation (CNV) analysis (Men et al., 2020). We then screened for rare sequencing variants (RSVs, <1% in the dbSNP, Genome AD, ESP6500 and 1000 Genomes database) in PLXNA1 (GenBank accession no. NC_000003.12), NRP1 (GenBank accession no. NC_000010.11), NRP2 (GenBank accession no. NC_000002.12), as well as other IHH‐associated genes. The detected variants were confirmed by PCR‐Sanger sequencing and the sequences of PCR primers are shown in Table S1. Cosegregation analysis was conducted on family members if available.

Bioinformatics and cosegregation analysis

Polyphen2, MutationTaster, SIFT, and Combined Annotation Dependent Depletion (CADD) were used to predict the pathogenicity of the identified variants as described previously (Dai et al., 2019). In addition, InterVar (http://wintervar.wglab.org/) was used to determine variant classification according to American College of Medical Genetics and Genomics (ACMG) guidelines (Richards et al., 2015).

RESULTS

Analysis of PLXNA1, NRP1, and NRP2 RSVs in IHH patients

Among the 196 HH patients, we identified 17 missense variants in PLXNA1, NRP1, and NRP2. For PLXNA1 (NM_032242), we identified 10 missense variants (p.P40R, p.V491I, p.R840Q, p.P848R, p.A1106V, p.T1067M, p.V1113L, p.R1134H, p.A1210V, and p.S1709L) in 11 different families, all of them are in the heterozygous state. Six variants (p.A1106V, p.T1067M, p.V1113L, p.R1134H, p.P1181L, and p.A1201V) were located in the immunoglobulin‐like fold in plexins/transcription factors (IPT) domains, two variants (p.P40R and p.V491I) resided in the semaphoring (SEMA) domain, and two variants (p.R840Q and p.P848R) was in the plexin/semaphorin/integrin (PSI) domain (Figure 1). Proband 1 inherited a p.P40R variant of PLXNA1 and a p.Q204R variant of OTUD4 from her unaffected father (Figure 2). Proband 5 (II:1 in family 5) carried a p.T1067M variant in PLXNA1, a p.G1048E variant, and a p.S1049 in CHD7, which was not seen in her unaffected parents (Figure 2). Proband 6 inherited a p.A1106V variant of PLXNA1 and a p.A292E variant of NROB1 from her unaffected mother (Figure 2). Proband 10 inherited a p.A1201V variant of PLXNA1 from her unaffected mother, and inherited a p.T68S variant of SPRY4 from her unaffected father (Figure 2). Proband 11 inherited a p.S1709L variant of PLXNA1 and a p.T730I variant of CHD7 from her unaffected mother (Figure 2). One variant (p.T1067M) is predicted to be damaging by SITF, Polyphen2, and MutaionTaster. Three variants (p.A1106V, p.A1210V, and p.S1709L) are predicted to be damaging by SITF and MutationTaster. The details of the identified PLXNA1 variants are represented in Table 1.
FIGURE 2

The Family analysis of IHH probands with variants in PLXNA1, NRP1, and NRP2. Members of the family are showed by the Roman and Arabic numerals below the symbol, and the Roman numerals denote generations. Squares, male; circles, female; arrow, the proband

TABLE 1

The prediction of PLXNA1, NRP1, and NRP2 variants using CADD, SIFT, Polyphen2, and MutaionTaster

Nucleotide changeProtein changeInheritanceACMGCADD ScoreSIFTPolyphen2MutaionTaster
PLXNA1 c.119C>Gp.P40RN/ALB0.002TBN
PLXNA1 c.G1471Ap.V491IN/AU22.8TBD
PLXNA1 c.2519G>Ap.R840QN/AU26.3TDD
PLXNA1 c.C2543Gp.P848RN/AU8.455TBN
PLXNA1 c.C3200Tp.T1067MN/AU28.8DDD
PLXNA1 c.C3317Tp.A1106VMaternalU24.5DBD
PLXNA1 c.G3337Cp.V1113LN/ALB0.351TBN
PLXNA1 c.G3401Ap.R1134HN/AU22.9DBN
PLXNA1 c.C3629Tp.A1210VN/AU23.5DBD
PLXNA1 c.C5126Tp.S1709LN/AU25.1DPD
NRP1: c.A418Cp.I140LN/AUDBD
NRP1: c.676C>Tp.R226CMaternalU35DDD
NRP1: c.A1274Tp.K425MMaternalUDDD
NRP1 c.C1571Tp.S524LN/AUDPD
NRP1 c.C1676Tp.T559MN/AU25.6TDD
NRP1 c.2200G>Ap.G734SN/AUTPD
NRP1 c.2596G>Ap.A866TN/AUDPD
NRP1 c.T2633Cp.V878AN/AU25.6DDD
NRP2 c.2033G>Ap.R678QMaternalLB8.318TBN
NRP2 c.C2773Ap.Q925KN/AUDDD

ACMG criteria: P, pathogenic; B, benign; U, uncertain significance; LP, likely pathogenic; LB, likely benign. CADD, combined annotation dependent depletion; A scaled CADD score of 20 means that a variant is among the top 1% of deleterious variants in the human genome; a scaled CADD score of 30 means that the variant is in the top 0.1%. SIFT: T, tolerated; D, deleterious. PolyPhen‐2: B, benign; P, possibly damaging; D, probably damaging. Mutation Taster: P, Polymorphism automatic; N, polymorphism; D, disease causing; NA, not available.

The Family analysis of IHH probands with variants in PLXNA1, NRP1, and NRP2. Members of the family are showed by the Roman and Arabic numerals below the symbol, and the Roman numerals denote generations. Squares, male; circles, female; arrow, the proband The prediction of PLXNA1, NRP1, and NRP2 variants using CADD, SIFT, Polyphen2, and MutaionTaster ACMG criteria: P, pathogenic; B, benign; U, uncertain significance; LP, likely pathogenic; LB, likely benign. CADD, combined annotation dependent depletion; A scaled CADD score of 20 means that a variant is among the top 1% of deleterious variants in the human genome; a scaled CADD score of 30 means that the variant is in the top 0.1%. SIFT: T, tolerated; D, deleterious. PolyPhen‐2: B, benign; P, possibly damaging; D, probably damaging. Mutation Taster: P, Polymorphism automatic; N, polymorphism; D, disease causing; NA, not available. For NRP1 (NM_003873.5), eight missense variants (p.I140L, p.R226C, p.K425M, p.S524L, p.T559M, p.G734S, p.A866T, and p.V878A) were detected in eight unrelated families, all in the heterozygous state. Two variants (p.I140L and p.R226C) located in the complement components C1r and C1s/uEGF/BMP‐1 (CUB) domain, two variants (p.S524L and p.T559M) were resided in the coagulation factors V and VIII (CF5/CF8) domain, two variants (p.A866T and p.V878A) located in the transmembrane (TM) domain, and one variant (p.G734S) was in the meprin/A5 antigen/receptor‐like protein tyrosine phosphatase μ (MAM) domain (Figure 1). Proband 14 inherited a p.K425M variant of NRP1 from his unaffected mother and a p.W178S variant of PROKR2 from his unaffected father (Figure 2). Proband 15 (II:1 in family 12) carried a p.S524L variant in NRP1, which was not seen in her unaffected parents. He inherited a p.T340M variant of FGFR1 from his unaffected mother and a p.R353H variant of PROKR2 from his unaffected father (Figure 2). Proband 19 inherited a p.V878A variant of NRP1 and a p.P191L variant of IL17RD from her unaffected father, and inherited a p.W178S variant in PROKR2 from her unaffected mother. Her cousin carried the IL17RD variant (p.P191L) was diagnosed with IHH (Figure 2). Three variants (p.R226C, p.K425M, and p.V878A) are predicted to be damaging by SITF, Polyphen2 and MutaionTaster. Three variants (p.I140L, p.S524L and p.A866T) are predicted to be damaging by SITF and MutationTaster. The details of the identified NRP1 variants are represented in Table 1. For NRP2 (NM_201266.1), only two heterozygous missense variants (p.R678Q and p.Q925K) were detected in two nIHH patients. The p.R678Q variant was located in the MAM domain, and the p.Q925K variant was in the intramembrane domain (Figure 1). Proband 20 inherited a p.R678Q variant of NRP2 from her unaffected father, and she carried a p.R240Q variant in GNRHR, which was not seen in her unaffected parents (Figure 2). One variant (p.Q925K) is predicted to be damaging by SITF, Polyphen2 and MutaionTaster. The details of the identified NRP2 variants are represented in Table 1.

Additional IHH‐associated variants

The results of this study showed that 17 patients had other IHH‐associated variants in genes comprising of OTUD4 (p.Q204R), SOX10 (p.G41V), CHD7 (p.T730I, p.G1048E, p.S1049C), NR0B1 (p.A292E), SEMA3E (p.Y66H), SPRY4 (p.T68S), FGFR1 (p.T340M), PROKR2 (p.W51C, p.W178S, p.R353H,), PNPLA6 (p.P387T, p.C1124Y), CCDC141 (p.R1384S), IL17RD (p.P191L), and GNRHR (p.R240Q). All of these variants were heterozygous, except for p.G41V in SOX10, which was homozygous variant in a KS patient[14], and p.A292E in NR0B1, which was hemizygote variant in a KS patient. The IHH‐associated gene variants are represented in Table 2.
TABLE 2

Clinical information of IHH patients with PLXNA1, NRP1, and NRP2 variants

IDAgeSexDxNucleotide changeProtein changeHormone levelsOther phenotypes
LHFSHTE2
127MKSPLXNA1 c.119C>Gp.P40R0.483.663.1713.07Cryptorchidism
OTUD4 c.A611Gp.Q204R
2MKSPLXNA1 c.G1471Ap.V491I0.31.00.512
327MKSPLXNA1 c.2519G>Ap.R840Q0.070.450.25<10Impaired hearing
SOX10 c.G122Tp.G41V
426MnIHHPLXNA1 c.C2543Gp.P848R0.011.20.119
NRP2 c.C2773Ap.Q925K
516FnIHHPLXNA1 c.C3200Tp.T1067M0.040.30.4120.81Impaired hearing
CHD7 c.G3143Ap.G1048E
CHD7 c.A3145Tp.S1049C
611MKSPLXNA1 c.C3317Tp.A1106V0.44.61<0.01<0.01
NR0B1 c.C875Ap.A292E
719MKSPLXNA1 c.G3337Cp.V1113L0.41.00.529
815MnIHHPLXNA1 c.G3401Ap.R1134H0.100.521Azoospermia in testis,
SEMA3E c.196T>Cp.Y66HHigh myopia
926MKSPLXNA1 c.G3401Ap.R1134H0.911.050.375.71
1021FKSPLXNA1 c.C3629Tp.A1210V0.62.3<2039.5Right renal agenesis
SPRY4 c.A202Tp.T68S
1125MnIHHPLXNA1 c.C5126Tp.S1709L0.21.10.922Azoospermia in testis, cubitus valgus
12FKSNRP1: c.A418Cp.I140L0.12.20.420Impaired hearing
13MKSNRP1: c.676C>Tp.R226C0.224.20.318Impaired hearing
PROK2: c.153G>Cp.W51C
14MKSNRP1: c.A1274Tp.K425M0.192.10.519
0PROKR2: c.G533Cp.W178S
15MKSNRP1 c.C1571Tp.S524L0.060.40.2215
FGFR1 c.1019C>Tp.T340M
PROKR2 c.G1058Ap.R353H
16MKSNRP1 c.C1676Tp.T559M0.31.60.728
PROKR2 c.G533Cp.W178S
1747MKSNRP1 c.2200G>Ap.G734S0.912.050.3237.45
PNPLA6 c.1159C>Ap.P387T
1825MKSNRP1 c.2596G>Ap.A866T0.130.830.210Cubitus valgus, right cryptorchidism
PNPLA6 c.3371G>Ap.C1124Y
CCDC141 c.4152G>Cp.R1384S
1911FKSNRP1 c.T2582Cp.V878A00.415.40.16
IL17RD c.C572Tp.P191L
PROKR2 c.G533Cp.W178S
2019FnIHHNRP2 c.2033G>Ap.R678Q0.090.50.2523.68
GNRHR c.719G>Ap.R240Q

The normal ranges were as follows: FSH, 1.3–19.3 UI/L; LH, 1.2–8.6 UI/L; E2, >20 pg/mL; t, 1.75–7.81 ng/mL.

Abbreviations: Dx, diagnosis; E2, estradiol; F, female; FSH, follicle stimulating hormone; KS, Kallmann syndrome; LH, luteinizing hormone; M, male; nIHH, normosmic isolated hypogonadotropic hypogonadism;T, testosterone.

Clinical information of IHH patients with PLXNA1, NRP1, and NRP2 variants The normal ranges were as follows: FSH, 1.3–19.3 UI/L; LH, 1.2–8.6 UI/L; E2, >20 pg/mL; t, 1.75–7.81 ng/mL. Abbreviations: Dx, diagnosis; E2, estradiol; F, female; FSH, follicle stimulating hormone; KS, Kallmann syndrome; LH, luteinizing hormone; M, male; nIHH, normosmic isolated hypogonadotropic hypogonadism;T, testosterone.

Genotype–phenotype correlation

The clinical data of the IHH patients with PLXNA1, NRP1, and NRP2 variants are summarized in Table 2. We have identified a PLXNA1 variant in 11 of 196 patients (5.60%), a NRP1 variant in 8 of 196 patients (4.08%), and a NRP2 variant in 2 of 196 patients (1.02%). Through a pedigree‐based analysis, 4 probands from 70 nIHH pedigrees (5.70%) and 7 probands from 126 KS pedigrees (5.50%) had a PLXNA1 variant. Eight probands from 126 KS pedigrees (6.35%) had a NRP1 variant. Two probands from 70 nIHH pedigrees (2.85%) had a NRP2 variant. Other IHH‐associated gene variants were found in 17 out of 20 patients (85.00%), no additional IHH‐associated gene variants were found in the remaining three patients. Proband 3 carried SOX10 variants (p.G41V) and proband 5 carried two de novo CHD7 variants (p.G1048E and p.S1049C) had impaired hearing (Figure 2). Proband 8 with a SEMA3E (p.Y66H) showed high myopia and azoospermia in testis in addition to nIHH (Figure 2). Proband 10 (II:1 in Family 10) inherited SPRY4 (p.T68S) and PLXNA1 (p.A1210V) variant from her unaffected father and mother, respectively. But she had right renal agenesis accompanied with KS (Figure 2). Proband 11 with a CHD7 (p.T730I), proband 18 with a PNPLA (p.C1124Y) and a CCDC141 (p.R1384S) showed cubitus valgus in addition to IHH (Figure 2). Proband 12 with a NRP1 (p.I140L) and proband 13 with a NRP1 (p.R226C) showed impaired hearing in addition to KS (Figure 2). Concerning the treatment, hormone replacement therapy successfully leaded to sexual development in IHH patients of the study but failed in probands 8 and 11.

DISCUSSION

In this study, we systematically analyzed the PLXNA1, NRP1, and NRP2 RSVs in Chinese IHH patients through whole exome sequencing. In general, we identified nine novel and one previously described PLXNA1 variants in 11 probands. Moreover, we identified seven novel and one previously described NRP1 variants in eight probands, and two novel NRP2 variants in two probands. The prevalence of PLXNA1, NRP1, and NRP2 variants was 5.60%, 4.08%, and 1.02%, respectively. Although SEMA3F and PLXNA3 were recently demonstrated to be IHH‐associated genes (Kotan et al., 2021), we only identified one PLXNA3 variant (A193V) whereas no SEMA3F variant was found in our cohort of 196 IHH patients. In our study, variants in PLXNA1, NRP1, and NRP2 can explain either the nIHH or KS phenotype. Digenic and oligogenic inheritance are quite common in IHH. Oligogenic inheritance in a patient/pedigree is thought to occur in 10–20% of all IHH cases (Boehm et al., 2015; Quaynor et al., 2011; Sykiotis et al., 2010). In our study, 85.00% probands had more than one IHH‐associated gene variants. The IHH phenotype may be a results of IHH‐associated gene variants. Proband 10 (II:1 in Family 10) inherited SPRY4 (p.T68S) and PLXNA1 (p.A1210V) variant from her unaffected father and mother, respectively. But she had right renal agenesis accompanied with KS. It illustrated the SPRY4 and PLXNA1 variants are enough to cause KS symptoms. Proband 14 inherited a p.K425M NRP1 and a p.W178S PROKR2 variant from her unaffected mother and father, respectively. It indicated the NRP1 and PROKR2 variants are enough to cause KS symptoms. Proband 19 inherited a p.V878A variant of NRP1 and a p.P191L variant of IL17RD from her unaffected father, and inherited a p.W178S variant in PROKR2 from her unaffected mother. It further confirmed variants in PLXNA1, NRP1, or NRP2 may cause IHH in company with other IHH‐associated gene variants (Amato et al., 2019). Therefore, we think there are yet‐undiscovered IHH‐associated gene variants in proband 2, 7, and 9. In this study, we found that probands 3, 5, 12, and 13 had impaired hearing. Hearing loss was frequently found in IHH patients with mutations in CHD7 or SOX10. CHD7 is a chromatin remodeling protein that controls gene expression via the formation of multi‐protein complexes with specific transcription factors (Schulz et al., 2014). Autosomal dominant mutations in the CHD7 gene is associated with CHARGE syndrome. CHARGE syndrome is a nonrandom clustering of congenital anomalies including coloboma, heart defects, choanal atresia, retarded growth and development, genital hypoplasia, ear anomalies, and deafness (Jongmans et al., 2006). Interestingly, CHD7 was enriched at the SEMA3A promotor in neural crest cells and loss of function of CHD7 leads to downregulation of SEMA3A expression (Ufartes et al., 2018). Indeed, SEMA3A was also identified as CHARGE‐related gene. As a receptors of SEMA3A, NRP1 was important in the repulsive axon guidance mediated by SEMA3A (Gu et al., 2002). It will be intriguing to investigate the involvement of SEMA3A signaling in the neural development of the ear. In conclusion, we studied the pedigree analysis and associated phenotypes of PLXNA1, NRP1, and NRP2 variants in Chinese IHH patients, which greatly enriched the genotypic and phenotypic spectra of PLXNA1, NRP1, and NRP2 in IHH. These results have implications for the genetic counseling, diagnosis, and treatment of IHH with mutations in the PLXNA1, NRP1, and NRP2 genes. Meanwhile, our study indicated NRP1 may be related to the neural development of the ear.

CONFLICT OF INTEREST

The authors declare no conflict of interest.

AUTHOR CONTRIBUTIONS

Meichao Men and Dan‐Na Chen drafted the manuscript and figures. Xinying Wang and Ruizhi Zheng collected the IHH patient's samples. Fang Jiang and Wang Zeng were responsible for the whole exome sequencing data analysis of the IHH patients. Wenting Dai and Jia‐Da Li designed the study and reviewed the manuscript. Table S1 Click here for additional data file.
  25 in total

1.  Predictors of outcome of long-term GnRH therapy in men with idiopathic hypogonadotropic hypogonadism.

Authors:  Nelly Pitteloud; Frances J Hayes; Andrew Dwyer; Paul A Boepple; Hang Lee; William F Crowley
Journal:  J Clin Endocrinol Metab       Date:  2002-09       Impact factor: 5.958

2.  CHARGE syndrome: the phenotypic spectrum of mutations in the CHD7 gene.

Authors:  M C J Jongmans; R J Admiraal; K P van der Donk; L E L M Vissers; A F Baas; L Kapusta; J M van Hagen; D Donnai; T J de Ravel; J A Veltman; A Geurts van Kessel; B B A De Vries; H G Brunner; L H Hoefsloot; C M A van Ravenswaaij
Journal:  J Med Genet       Date:  2005-09-09       Impact factor: 6.318

3.  Defective gonadotropin-releasing hormone neuron migration in mice lacking SEMA3A signalling through NRP1 and NRP2: implications for the aetiology of hypogonadotropic hypogonadism.

Authors:  Anna Cariboni; Kathryn Davidson; Sonja Rakic; Roberto Maggi; John G Parnavelas; Christiana Ruhrberg
Journal:  Hum Mol Genet       Date:  2010-11-08       Impact factor: 6.150

4.  Defective signaling through plexin-A1 compromises the development of the peripheral olfactory system and neuroendocrine reproductive axis in mice.

Authors:  Séverine Marcos; Carine Monnier; Xavier Rovira; Corinne Fouveaut; Nelly Pitteloud; Fabrice Ango; Catherine Dodé; Jean-Pierre Hardelin
Journal:  Hum Mol Genet       Date:  2017-06-01       Impact factor: 6.150

Review 5.  Genetics of Hypogonadotropic Hypogonadism.

Authors:  A Kemal Topaloglu; L Damla Kotan
Journal:  Endocr Dev       Date:  2015-12-17

6.  SEMA3A deletion in a family with Kallmann syndrome validates the role of semaphorin 3A in human puberty and olfactory system development.

Authors:  Jacques Young; Corinne Metay; Jerome Bouligand; Bassim Tou; Bruno Francou; Luigi Maione; Lucie Tosca; Julie Sarfati; Frédéric Brioude; Blandine Esteva; Audrey Briand-Suleau; Sophie Brisset; Michel Goossens; Gerard Tachdjian; Anne Guiochon-Mantel
Journal:  Hum Reprod       Date:  2012-03-12       Impact factor: 6.918

7.  Oligogenic basis of isolated gonadotropin-releasing hormone deficiency.

Authors:  Gerasimos P Sykiotis; Lacey Plummer; Virginia A Hughes; Margaret Au; Sadia Durrani; Sadhana Nayak-Young; Andrew A Dwyer; Richard Quinton; Janet E Hall; James F Gusella; Stephanie B Seminara; William F Crowley; Nelly Pitteloud
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-09       Impact factor: 11.205

8.  Functional analysis of SOX10 mutations identified in Chinese patients with Kallmann syndrome.

Authors:  Wenting Dai; Jiayu Wu; Yaguang Zhao; Fang Jiang; Ruizhi Zheng; Dan-Na Chen; Meichao Men; Jia-Da Li
Journal:  Gene       Date:  2019-03-23       Impact factor: 3.688

9.  Mutation screening of SEMA3A and SEMA7A in patients with congenital hypogonadotropic hypogonadism.

Authors:  Johanna Känsäkoski; Rainer Fagerholm; Eeva-Maria Laitinen; Kirsi Vaaralahti; Peter Hackman; Nelly Pitteloud; Taneli Raivio; Johanna Tommiska
Journal:  Pediatr Res       Date:  2014-02-12       Impact factor: 3.756

Review 10.  Congenital Hypogonadotropic Hypogonadism and Kallmann Syndrome: Past, Present, and Future.

Authors:  Soo Hyun Kim
Journal:  Endocrinol Metab (Seoul)       Date:  2015-12
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1.  Analysis of PLXNA1, NRP1, and NRP2 variants in a cohort of patients with isolated hypogonadotropic hypogonadism.

Authors:  Meichao Men; Dan-Na Chen; Jia-Da Li; Xinying Wang; Wang Zeng; Fang Jiang; Ruizhi Zheng; Wenting Dai
Journal:  Mol Genet Genomic Med       Date:  2021-10-11       Impact factor: 2.183

2.  FGF8-FGFR1 signaling regulates human GnRH neuron differentiation in a time- and dose-dependent manner.

Authors:  Venkatram Yellapragada; Nazli Eskici; Yafei Wang; Shrinidhi Madhusudan; Kirsi Vaaralahti; Timo Tuuri; Taneli Raivio
Journal:  Dis Model Mech       Date:  2022-08-16       Impact factor: 5.732

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