Literature DB >> 34627789

Structures of Gating Intermediates in a K+ channel.

Ravikumar Reddi1, Kimberly Matulef2, Erika Riederer2, Pierre Moenne-Loccoz2, Francis I Valiyaveetil3.   

Abstract

Regulation of ion conduction through the pore of a K+ channel takes place through the coordinated action of the activation gate at the bundle crossing of the inner helices and the inactivation gate located at the selectivity filter. The mechanism of allosteric coupling of these gates is of key interest. Here we report new insights into this allosteric coupling mechanism from studies on a W67F mutant of the KcsA channel. W67 is in the pore helix and is highly conserved in K+ channels. The KcsA W67F channel shows severely reduced inactivation and an enhanced rate of activation. We use continuous wave EPR spectroscopy to establish that the KcsA W67F channel shows an altered pH dependence of activation. Structural studies on the W67F channel provide the structures of two intermediate states: a pre- open state and a pre-inactivated state of the KcsA channel. These structures highlight key nodes in the allosteric pathway. The structure of the KcsA W67F channel with the activation gate open shows altered ion occupancy at the second ion binding site (S2) in the selectivity filter. This finding in combination with previous studies strongly support a requirement for ion occupancy at the S2 site for the channel to inactivate.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Channel gating; Crystallography; Electrophysiology; Membrane protein; Potassium channel

Mesh:

Substances:

Year:  2021        PMID: 34627789      PMCID: PMC8672811          DOI: 10.1016/j.jmb.2021.167296

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  44 in total

1.  Structural rearrangements underlying K+-channel activation gating.

Authors:  E Perozo; D M Cortes; L G Cuello
Journal:  Science       Date:  1999-07-02       Impact factor: 47.728

2.  Ion-binding properties of a K+ channel selectivity filter in different conformations.

Authors:  Shian Liu; Paul J Focke; Kimberly Matulef; Xuelin Bian; Pierre Moënne-Loccoz; Francis I Valiyaveetil; Steve W Lockless
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-23       Impact factor: 11.205

Review 3.  A structural interpretation of voltage-gated potassium channel inactivation.

Authors:  Harley T Kurata; David Fedida
Journal:  Prog Biophys Mol Biol       Date:  2005-11-08       Impact factor: 3.667

4.  A multipoint hydrogen-bond network underlying KcsA C-type inactivation.

Authors:  Julio F Cordero-Morales; Vishwanath Jogini; Sudha Chakrapani; Eduardo Perozo
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

5.  Gated access to the pore of a voltage-dependent K+ channel.

Authors:  Y Liu; M Holmgren; M E Jurman; G Yellen
Journal:  Neuron       Date:  1997-07       Impact factor: 17.173

6.  Crystallographic study of the tetrabutylammonium block to the KcsA K+ channel.

Authors:  Sarah Yohannan; Yue Hu; Yufeng Zhou
Journal:  J Mol Biol       Date:  2006-12-02       Impact factor: 5.469

7.  Structural mechanism of C-type inactivation in K(+) channels.

Authors:  Luis G Cuello; Vishwanath Jogini; D Marien Cortes; Eduardo Perozo
Journal:  Nature       Date:  2010-07-08       Impact factor: 49.962

8.  PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Ian W Davis; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Gary J Kapral; Ralf W Grosse-Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

9.  Hydrogen bonds as molecular timers for slow inactivation in voltage-gated potassium channels.

Authors:  Stephan A Pless; Jason D Galpin; Ana P Niciforovic; Harley T Kurata; Christopher A Ahern
Journal:  Elife       Date:  2013-12-10       Impact factor: 8.140

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  1 in total

1.  The nonconducting W434F mutant adopts upon membrane depolarization an inactivated-like state that differs from wild-type Shaker-IR potassium channels.

Authors:  Laura Coonen; Evelyn Martinez-Morales; Dieter V Van De Sande; Dirk J Snyders; D Marien Cortes; Luis G Cuello; Alain J Labro
Journal:  Sci Adv       Date:  2022-09-16       Impact factor: 14.957

  1 in total

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