| Literature DB >> 34617422 |
Benny Man Wai Lit1, Belinda B Guo2, Jacques A J Malherbe3, Yok Lam Kwong4, Wendy N Erber2,5.
Abstract
BACKGROUND: Acute myeloid leukaemia (AML) results from the clonal expansion of blast cells of myeloid origin driven by genomic defects. The advances in next-generation sequencing (NGS) have allowed the identification of many mutated genes important in the pathogenesis of AML. AIMS: In this study, we aimed to assess the mutation types and frequency in a Chinese cohort presenting with de novo AML cohort using a targeted NGS strategy.Entities:
Keywords: Chinese AML; DNMT3A; mutation frequency; next-generation sequencing
Mesh:
Substances:
Year: 2021 PMID: 34617422 PMCID: PMC9575498 DOI: 10.1002/cnr2.1573
Source DB: PubMed Journal: Cancer Rep (Hoboken) ISSN: 2573-8348
FIGURE 1Number of gene mutations per patient of the acute myeloid leukaemia (AML) patient cohort
FIGURE 2Waterfall plot of the filtered mutations in all patients. The left plot shows the frequency of each mutation. For clarity, FLT3‐ITD and FLT3‐TKD are shown separate to other mutations in FLT3. The right plot shows the types of mutations in each patient sample
FIGURE 3Mutation frequencies of significantly mutated genes in AML patients
Clinical and molecular features of acute myeloid leukaemia (AML) patients with DNMT3A mutations
| Patient gender/age (years) | WHO/FAB diagnosis | Karyotype |
|
|
|
|
|---|---|---|---|---|---|---|
| F/54 | AML without maturation/AML M1 | 46, XX[18] | p.Arg882Cy (R882C) | Negative | Positive(57 base pairs duplication) |
|
| M/48 | Acute myelomonocytic leukaemia/AML M4 | 46, XY[22] | p.Pro904leu (P904L) | Negative | Negative | Negative |
| M/78 | AML with maturation/AML M2 | 46, XY[19] | p.Arg882His (R882H) | Negative | Positive (8 base pairs duplication) | Negative |
| F/54 | AML with maturation/AML M2 | 47, XX,+?15[2]/46, XX[18] | p.Arg882His (R882H) | Negative | Negative |
|
| F/46 | AML without maturation/AML M1 | 46, XX[20] | p.Ser714cys (S714C) | Negative | Negative |
|
| F/70 | Acute myelomonocytic leukaemia/AML M4 | 46, XX[19] | p.Lys299Asnfs (K299N) | Negative | Negative | Negative |
| F/53 | AML without maturation/AML M1 | 47, XX, t(8; 21) (q22; q22),+15[19] | p.Lys299Asnfs (K299N) | Negative | Positive (39 base pairs duplication) | Negative |
| F/72 | Acute monocytic leukaemia/AML M5b | 46, XX[20] | p.Arg882 Pro (R882P) | p.Trp288Cysfs*12 (W288C) (mutation A with TCTG insertion) | Positive (18 base pairs duplication) | Negative |
| F/43 | Acute myelomonocytic leukaemia/AML M4 | 46, XX[20] | p.Arg882 His (R882H) | p.Trp288Cysfs*12 (W288C) (mutation A with TCTG insertion) | Positive (48 base pairs duplication) | Negative |
| M/52 | AML without maturation/AML M1 | 46, XY, t(2, 12) (p.23;q24.1)[20] | p.Cys710Tyr (C710Y) | p.Trp288Cysfs*12 (W288C) (mutation A with TCTG insertion) | Positive (42 base pairs duplication) | Negative |
| M/66 | AML without maturation/AML M1 | 46, XY[18] | p.Glu545* |
p.Trp288Cysfs*12 (W288C) (mutation A with TCTG insertion) | Positive (87 base pairs duplication) |
|
| M/45 | Acute myelomonocytic leukaemia/AML M4 | 46, XY[20] | p.Arg882Cys (R882C) | p.Trp288Cysfs*12 (W288C) (mutation A with TCTG insertion) | Negative |
|
| F/62 | AML without maturation/AML M1 | 46, XX[21] | p.Arg882His (R882H) | Negative | Negative |
|
| M/59 | AML with maturation/AML M2 | 46, XY,t(10;11) (q23; p15)[1]/46, idem, add(6) (p25)[19] | p.Arg882His (R882H), p.Lys299Asnfs (K299N) | Negative | Positive (27 base pairs duplication) | Negative |
| F/70 | AML with maturation/AML M2 | 46, XX[20] | p.Ser714Cys (S714C), p.Glu545* | Negative | Negative | Negative |
| F/78 | AML without maturation/AML M1 | 46, XX[20] | p.Arg882His (R882H), P.Glu545* | p.Trp288Cysfs*12 (W288C) (mutation A with TCTG insertion) | Positive |
|
| M/65 | Acute myelomonocytic leukaemia/AML M4 | 46, XY[20] | P.Glu545* | p.Trp288Cysfs*12 (W288C) (mutation A with TCTG insertion) | Negative |
|
| M/72 | AML with maturation/AML M2 | 46, XY[20] | p.Trp893Val, p.Glu545* | Negative | Negative | Negative |
| F/87 | AML with myelodysplasia‐related changes (multilineage dysplasia) | 46, XX[20] | p.Glu545* | Negative | Negative | Negative |
| M/50 | AML without maturation/AML M1 | 46, XY[20] | p.Arg882His (R882H), p.Glu545*, p.Trp893Valfs | p.Trp288Cysfs*12 (W288C) (mutation A with TCTG insertion) | Negative | Negative |
| M/80 | AML without maturation/AML M1 | 46, XY[20] | p.Cys911Tyr (C911Y), p.Glu545* | p.Trp288Cysfs*12 (W288C) (mutation A with TCTG insertion) | Negative | Negative |
| F/49 | AML without maturation/AML M1 | 46, XX[20] | p.Glu545* | p.Trp288Cysfs*12 (W288C) (mutation A with TCTG insertion) | Not done | Negative |
| F/82 | AML with myelodysplasia‐related changes (multilineage dysplasia) | 46, XX[20] | p.Glu545* | p.Trp288Cysfs*12 (W288C) (mutation A with TCTG insertion) | Negative | Negative |
| M/81 | AML with maturation/AML M2 | 46, XY[20] | p.Glu545* | Negative | Negative | Negative |
| M/88 | Acute myelomonocytic leukaemia/AML M4 | 46, XY[20] | p.Ser638Cys (S638C) | p.Trp288Cysfs*12 (W288C) (mutation A with TCTG insertion) | Positive | Negative |
| M/50 | AML without maturation/AML M1 | 46, XY[20] | p.Thr503Asnfs (T503N) | p.Trp288Cysfs*12 (W288C) (mutation A with TCTG insertion) | Negative | Negative |
| M/41 | AML without maturation/AML M1 | 46, XY[20] | p.Arg882His (R882H) | p.Trp288Cysfs*12 (W288C) (mutation A with TCTG insertion) | Negative | Negative |
| F/42 | AML with maturation/AML M2 | 46, XX[20] | p.Arg885Trp (R885W), p.Val649Met | Negative | Negative |
|
| F/63 | AML with maturation/AML M2 | 46, XX[20] | p.Arg882Cys (R882C), p. Glu545* (E545*) | Negative | Negative | Negative |
| M/58 | Acute monocytic leukaemia/AML M5b | 46, XY[20] | p.Arg882His (R882H) | p.Trp288Cysfs*12 (W288C) (mutation A with TCTG insertion) | Positive | Negative |
| F/54 | AML with maturation/AML M2 | 46, XX[20] | p.Gly722Asp (G722D) | Negative | Negative |
|
| F/57 | AML without maturation/AML M1 | 46, XX[20] | p.Val636Leu (V636L) | p.Trp288Cysfs*12 (W288C) (mutation A with TCTG insertion) | Not done | Negative |
| F/50 | Acute myelomonocytic leukaemia/AML M4 | 46, XX[20] | p.Trp795* (W795*) | p.Trp288Cysfs*12 (W288C) (mutation A with TCTG insertion) | Positive | Negative |
Co‐occurrence of gene mutations in acute myeloid leukaemia (AML) patients
| NPM1 | FLT3‐ITD | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| WT | Mutant |
| WT | Mutant |
| ||||
|
| WT | 41 | 13 | .009 |
| WT | 48 | 6 | .002 |
| Mutant | 16 | 17 | Mutant | 18 | 12 | ||||
Abbreviation: WT, wild type.