| Literature DB >> 34616502 |
Ling-Feng Zha1, Jiang-Tao Dong2, Jing-Lin Wang1, Qian-Wen Chen3, Jian-Fei Wu4, Ying-Chao Zhou5, Shao-Fang Nie1, Xin Tu4.
Abstract
OBJECTIVES: Observational studies indicate that insomnia may increase risk of peptic ulcer disease (PUD). Our purpose is to clarify the possible causal relationship between insomnia and PUD by Mendelian randomization analyses.Entities:
Mesh:
Year: 2021 PMID: 34616502 PMCID: PMC8487841 DOI: 10.1155/2021/2216314
Source DB: PubMed Journal: Oxid Med Cell Longev ISSN: 1942-0994 Impact factor: 6.543
Characteristics of the studied insomnia-associated SNPs in both insomnia and PUD GWAS.
| SNP | Gene | EA | NA | Insomnia results | PUD results | ||||
|---|---|---|---|---|---|---|---|---|---|
| BETA | SE |
| BETA | SE |
| ||||
| rs375216017 | MEIS1 | GT | G | 0.089574 | 0.015720 | 1.21 | — | — | — |
| rs62144051 | MEIS1 | G | A | 0.096151 | 0.016318 | 3.81 | 0.018165 | 0.019416 | 0.35 |
| rs62144053 | MEIS1 | A | G | 0.098931 | 0.016272 | 1.20 | 0.026932 | 0.019223 | 0.16 |
| rs62144054 | MEIS1 | A | G | 0.097846 | 0.016237 | 1.68 | 0.026976 | 0.019221 | 0.16 |
| rs113851554 | MEIS1 | T | G | 0.178239 | 0.020371 | 2.14 | 0.019566 | 0.025498 | 0.44 |
| rs182588061 | MEIS1 | T | G | 0.228449 | 0.036320 | 3.18 | 0.029322 | 0.051821 | 0.57 |
| rs139775539 | MEIS1 | A | AC | 0.186994 | 0.022403 | 7.00 | — | — | — |
| rs11679120 | MEIS1 | A | G | 0.187813 | 0.022461 | 6.18 | 0.021005 | 0.027931 | 0.45 |
| rs115087496 | MEIS1 | C | G | 0.177042 | 0.022576 | 4.43 | 0.009710 | 0.029911 | 0.73 |
| rs549771308 | MEIS1 | C | CT | 0.090546 | 0.015777 | 9.51 | — | — | — |
| rs11693221 | MEIS1 | T | C | 0.170821 | 0.022572 | 3.79 | 0.009066 | 0.028027 | 0.75 |
| rs574753165 | SCFD2 | G | A | 0.394740 | 0.067503 | 4.98 | — | — | — |
PUD: peptic ulcer disease; EA/NA: effect allele/no effect allele; BETA: effect size; SE: standard error of the effect size; P: P values indicate genome-wide significance in GWAS.
Characteristics of the studied PUD-associated SNPs in both insomnia and PUD GWAS.
| SNP | Gene | EA | NA | PUD results | Insomnia results | ||||
|---|---|---|---|---|---|---|---|---|---|
| BETA | SE |
| BETA | SE |
| ||||
| rs681343 | FUT2 | C | T | -0.088770 | 0.011169 | 1.9 | -0.006920 | 0.005108 | 0.18 |
| rs2976388 | PSCA | G | A | 0.086730 | 0.011318 | 1.8 | 0.004309 | 0.005152 | 0.40 |
| rs10500661 | CCKBR | T | C | -0.101570 | 0.013439 | 4.1 | 0.004008 | 0.006322 | 0.53 |
| rs147048677 | MUC1 | C | T | -0.152180 | 0.022310 | 9.0 | — | — | — |
| rs78459074 | MUC6 | A | G | 0.115348 | 0.018241 | 2.6 | 0.002804 | 0.008030 | 0.73 |
| rs34074411 | GAST | C | T | -0.072050 | 0.011397 | 2.6 | -0.010940 | 0.005242 | 0.04 |
| rs687621 | ABO | A | G | 0.073539 | 0.012116 | 1.3 | -0.007970 | 0.005474 | 0.13 |
| rs9581957 | CDX2 | C | T | -0.069730 | 0.011819 | 3.6 | 0.001601 | 0.005474 | 0.77 |
PUD: peptic ulcer disease; EA/NA: effect allele/no effect allele; BETA: effect size; SE: standard error of the effect size; P: P values indicate genome-wide significance in GWAS.
Figure 1Comparison plot of the association between insomnia-related SNPs associated with insomnia and PUD: (a) 8 insomnia-related SNP analysis; (b) 242 insomnia-related SNP analysis. Each point displays the influence of the SNP on the insomnia and PUD. The slope of the line represents the causal association.
Figure 2Forest plot estimates the effect of genetically increased insomnia risk on PUD. EA/NA: effect allele/no effect allele; OR: odds ratio; CI: confidence interval.
Figure 3Causal effect from PUD to insomnia: (a) comparison plot of the association between PUD-related SNPs associated with insomnia and PUD; (b) forest plot estimates the effect of genetically increased PUD risk on insomnia. Each point displays the influence of the SNP on the insomnia and PUD.
Figure 4Genes mapped to insomnia-related SNPs: (a) venn diagram; (b) circos plot heatmap.
Figure 5Enrichment analysis: (a) biological pathway of enrichment genes; (b) enrichment heatmap for selected GO.
Figure 6Gene cluster: (a) gene clusters and interactions between genes; (b) genes in the enrichment GO.