Literature DB >> 34608524

The first third-generation HIV-1 circulating recombinant form (CRF114_0155) identified in central China.

Yang Li1,2,3, Yan Zhang1,3, Hongye Wang4, Long Liu2, Hui Chen2, Shuanhu Zhang2, Wenying Wu1, Rongge Yang5,6,7,8.   

Abstract

A novel circulating recombinant form (CRF) was identified in eight HIV-1-infected patients without direct epidemiological relationships in Henan Province, Central China. Recombination analysis indicated that the genome of this novel CRF comprises five segments: three inherited from CRF01_AE cluster-4 and two from CRF55_01B. Therefore, the CRF was designated CRF114_0155. It is not only the first novel CRF identified in Henan Province but also the first third-generation CRF of HIV-1 and the first CRF descendant of CRF55_01B. Bayesian inference of phylogeny dated the most recent common ancestor of the CRF114_0155 cluster to 2010. The emergence of CRF114_0155 reflects that the genotype constitution of HIV-1 has become more complex and that stricter intervention measures should be implemented in central China.
© 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.

Entities:  

Mesh:

Year:  2021        PMID: 34608524     DOI: 10.1007/s00705-021-05213-9

Source DB:  PubMed          Journal:  Arch Virol        ISSN: 0304-8608            Impact factor:   2.574


  18 in total

1.  HIV-1 nomenclature proposal.

Authors:  D L Robertson; J P Anderson; J A Bradac; J K Carr; B Foley; R K Funkhouser; F Gao; B H Hahn; M L Kalish; C Kuiken; G H Learn; T Leitner; F McCutchan; S Osmanov; M Peeters; D Pieniazek; M Salminen; P M Sharp; S Wolinsky; B Korber
Journal:  Science       Date:  2000-04-07       Impact factor: 47.728

2.  Geno2pheno: Estimating phenotypic drug resistance from HIV-1 genotypes.

Authors:  Niko Beerenwinkel; Martin Däumer; Mark Oette; Klaus Korn; Daniel Hoffmann; Rolf Kaiser; Thomas Lengauer; Joachim Selbig; Hauke Walter
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  Tracing the origin and history of HIV-1 subtype B' epidemic by near full-length genome analyses.

Authors:  Zhe Li; Xiang He; Zhe Wang; Hui Xing; Fan Li; Yao Yang; Quan Wang; Yutaka Takebe; Yiming Shao
Journal:  AIDS       Date:  2012-04-24       Impact factor: 4.177

Review 4.  MEGA biocentric software for sequence and phylogenetic analysis: a review.

Authors:  Vipan Kumar Sohpal; Apurba Dey; Amarpal Singh
Journal:  Int J Bioinform Res Appl       Date:  2010

5.  Relatively high prevalence of drug resistance among antiretroviral-naive patients from Henan, Central China.

Authors:  Lingnuo Li; Binlian Sun; Haiyan Zeng; Zhiwu Sun; Guoqing Sun; Rongge Yang
Journal:  AIDS Res Hum Retroviruses       Date:  2013-07-24       Impact factor: 2.205

6.  Near Full-Length Genome Sequences of Two Novel HIV-1 Recombinant Forms Detected in Henan Province, China.

Authors:  Tianyi Li; Guoqing Sun; Dijing Jia; Changrong Sun; Zhe Wang; Siyang Liu; Yongjian Liu; Hanping Li; Xiaolin Wang; Jingyun Li; Lin Li
Journal:  AIDS Res Hum Retroviruses       Date:  2016-06-13       Impact factor: 2.205

7.  HIV-infected former plasma donors in rural Central China: from infection to survival outcomes, 1985-2008.

Authors:  Zhihui Dou; Ray Y Chen; Zhe Wang; Guoping Ji; Guoping Peng; Xiaochun Qiao; Jihua Fu; Xiangdong Meng; Marc Bulterys; Ye Ma; Yan Zhao; Ning Wang; Fujie Zhang
Journal:  PLoS One       Date:  2010-10-29       Impact factor: 3.240

8.  Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination.

Authors:  K S Lole; R C Bollinger; R S Paranjape; D Gadkari; S S Kulkarni; N G Novak; R Ingersoll; H W Sheppard; S C Ray
Journal:  J Virol       Date:  1999-01       Impact factor: 5.103

9.  Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation.

Authors:  Ivica Letunic; Peer Bork
Journal:  Nucleic Acids Res       Date:  2021-07-02       Impact factor: 16.971

10.  Protocol for nearly full-length sequencing of HIV-1 RNA from plasma.

Authors:  Yuka Nadai; Lindsay M Eyzaguirre; Niel T Constantine; Anne M Sill; Farley Cleghorn; William A Blattner; Jean K Carr
Journal:  PLoS One       Date:  2008-01-09       Impact factor: 3.240

View more
  1 in total

1.  Nanopore Sequencing for Characterization of HIV-1 Recombinant Forms.

Authors:  Mikiko Mori; Hirotaka Ode; Mai Kubota; Yoshihiro Nakata; Takaaki Kasahara; Urara Shigemi; Reiko Okazaki; Masakazu Matsuda; Kazuhiro Matsuoka; Atsuko Sugimoto; Atsuko Hachiya; Mayumi Imahashi; Yoshiyuki Yokomaku; Yasumasa Iwatani
Journal:  Microbiol Spectr       Date:  2022-07-27
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.