Literature DB >> 20615832

MEGA biocentric software for sequence and phylogenetic analysis: a review.

Vipan Kumar Sohpal1, Apurba Dey, Amarpal Singh.   

Abstract

Biocomputing has moved into central position in molecular biology research. Enormous improvements in genetic engineering have led to the accumulation of a vast amount of biological information. With the advent of this extensive repertoire of raw sequence information, the next major challenge for a modern researcher is to interpret this biological information. Molecular Evolutionary Genetic Analysis (MEGA) is bio-computational software to fill the vacuum between data development and analysis. In this paper, an attempt to review the evolution of MEGA software, working and application has been made. Moreover, data analysis, implementation and advantages over other bioinformatics software have been discussed systematically.

Mesh:

Year:  2010        PMID: 20615832     DOI: 10.1504/IJBRA.2010.034072

Source DB:  PubMed          Journal:  Int J Bioinform Res Appl        ISSN: 1744-5485


  16 in total

1.  Combining Analysis of DNA in a Crude Virion Extraction with the Analysis of RNA from Infected Leaves to Discover New Virus Genomes.

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Journal:  J Vis Exp       Date:  2018-07-27       Impact factor: 1.355

2.  MADS-box transcription factors MADS11 and DAL1 interact to mediate the vegetative-to-reproductive transition in pine.

Authors:  Jing-Jing Ma; Xi Chen; Yi-Tong Song; Gui-Fang Zhang; Xian-Qing Zhou; Shu-Peng Que; Fei Mao; Tariq Pervaiz; Jin-Xing Lin; Yue Li; Wei Li; Harry X Wu; Shi-Hui Niu
Journal:  Plant Physiol       Date:  2021-09-04       Impact factor: 8.005

3.  Isolation and expression profiles of gibberellin metabolism genes in developing male and female cones of Pinus tabuliformis.

Authors:  Shihui Niu; Lu Yuan; Yuncheng Zhang; Xiaoyang Chen; Wei Li
Journal:  Funct Integr Genomics       Date:  2014-07-31       Impact factor: 3.410

4.  The first third-generation HIV-1 circulating recombinant form (CRF114_0155) identified in central China.

Authors:  Yang Li; Yan Zhang; Hongye Wang; Long Liu; Hui Chen; Shuanhu Zhang; Wenying Wu; Rongge Yang
Journal:  Arch Virol       Date:  2021-10-04       Impact factor: 2.574

5.  Bacteriophage cocktail significantly reduces Escherichia coli O157: H7 contamination of lettuce and beef, but does not protect against recontamination.

Authors:  Chandi D Carter; Adam Parks; Tamar Abuladze; Manrong Li; Joelle Woolston; Joshua Magnone; Andre Senecal; Andrew M Kropinski; Alexander Sulakvelidze
Journal:  Bacteriophage       Date:  2012-07-01

6.  Effect of Elodea nuttallii roots on bacterial communities and MMHg proportion in a Hg polluted sediment.

Authors:  Nicole Regier; Beat Frey; Brandon Converse; Eric Roden; Alexander Grosse-Honebrink; Andrea Garcia Bravo; Claudia Cosio
Journal:  PLoS One       Date:  2012-09-17       Impact factor: 3.240

7.  A rare fungal species, Quambalaria cyanescens, isolated from a patient after augmentation mammoplasty--environmental contaminant or pathogen?

Authors:  Xin Fan; Meng Xiao; Fanrong Kong; Timothy Kudinha; He Wang; Ying-Chun Xu
Journal:  PLoS One       Date:  2014-10-20       Impact factor: 3.240

8.  Identification and expression profiles of sRNAs and their biogenesis and action-related genes in male and female cones of Pinus tabuliformis.

Authors:  Shi-Hui Niu; Chang Liu; Hu-Wei Yuan; Pei Li; Yue Li; Wei Li
Journal:  BMC Genomics       Date:  2015-09-15       Impact factor: 3.969

9.  A novel algorithm for detecting multiple covariance and clustering of biological sequences.

Authors:  Wei Shen; Yan Li
Journal:  Sci Rep       Date:  2016-07-25       Impact factor: 4.379

10.  Microbiological characteristics of a novel species most closely related to 'Bergeyella cardium' as a pathogen of infectious endocarditis.

Authors:  Li-Na Guo; Ying Li; Po-Ren Hsueh; Peng Wang; Yu-Pei Zhao; Ying-Chun Xu
Journal:  PLoS One       Date:  2018-01-25       Impact factor: 3.240

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