Literature DB >> 34607773

Metabolic and epigenetic regulation of endoderm differentiation.

Yi Fang1, Xiaoling Li2.   

Abstract

The endoderm, one of the three primary germ layers, gives rise to lung, liver, stomach, intestine, colon, pancreas, bladder, and thyroid. These endoderm-originated organs are subject to many life-threatening diseases. However, primary cells/tissues from endodermal organs are often difficult to grow in vitro. Human pluripotent stem cells (hPSCs), therefore, hold great promise for generating endodermal cells and their derivatives for the development of new therapeutics against these human diseases. Although a wealth of research has provided crucial information on the mechanisms underlying endoderm differentiation from hPSCs, increasing evidence has shown that metabolism, in connection with epigenetics, actively regulates endoderm differentiation in addition to the conventional endoderm inducing signals. Here we review recent advances in metabolic and epigenetic regulation of endoderm differentiation. Published by Elsevier Ltd.

Entities:  

Keywords:  endoderm differentiation; endodermal gene expression; epigenetic remodeling; histone crotonylation; metabolic switch

Mesh:

Year:  2021        PMID: 34607773      PMCID: PMC8760149          DOI: 10.1016/j.tcb.2021.09.002

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  90 in total

1.  UTX and JMJD3 are histone H3K27 demethylases involved in HOX gene regulation and development.

Authors:  Karl Agger; Paul A C Cloos; Jesper Christensen; Diego Pasini; Simon Rose; Juri Rappsilber; Irina Issaeva; Eli Canaani; Anna Elisabetta Salcini; Kristian Helin
Journal:  Nature       Date:  2007-08-22       Impact factor: 49.962

2.  Activin/Nodal signaling controls divergent transcriptional networks in human embryonic stem cells and in endoderm progenitors.

Authors:  Stephanie Brown; Adrian Teo; Siim Pauklin; Nicholas Hannan; Candy H-H Cho; Bing Lim; Leah Vardy; N Ray Dunn; Matthew Trotter; Roger Pedersen; Ludovic Vallier
Journal:  Stem Cells       Date:  2011-08       Impact factor: 6.277

3.  The generation of definitive endoderm from human embryonic stem cells is initially independent from activin A but requires canonical Wnt-signaling.

Authors:  Ortwin Naujok; Ulf Diekmann; Sigurd Lenzen
Journal:  Stem Cell Rev Rep       Date:  2014-08       Impact factor: 5.739

4.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

Authors:  Minjia Tan; Hao Luo; Sangkyu Lee; Fulai Jin; Jeong Soo Yang; Emilie Montellier; Thierry Buchou; Zhongyi Cheng; Sophie Rousseaux; Nisha Rajagopal; Zhike Lu; Zhen Ye; Qin Zhu; Joanna Wysocka; Yang Ye; Saadi Khochbin; Bing Ren; Yingming Zhao
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

5.  UTX, a histone H3-lysine 27 demethylase, acts as a critical switch to activate the cardiac developmental program.

Authors:  Seunghee Lee; Jae W Lee; Soo-Kyung Lee
Journal:  Dev Cell       Date:  2011-12-20       Impact factor: 12.270

6.  Defining early lineage specification of human embryonic stem cells by the orchestrated balance of canonical Wnt/beta-catenin, Activin/Nodal and BMP signaling.

Authors:  Tomoyuki Sumi; Norihiro Tsuneyoshi; Norio Nakatsuji; Hirofumi Suemori
Journal:  Development       Date:  2008-07-30       Impact factor: 6.868

7.  Dependence of mouse embryonic stem cells on threonine catabolism.

Authors:  Jian Wang; Peter Alexander; Leeju Wu; Robert Hammer; Ondine Cleaver; Steven L McKnight
Journal:  Science       Date:  2009-07-09       Impact factor: 47.728

8.  Histone crotonylation promotes mesoendodermal commitment of human embryonic stem cells.

Authors:  Yi Fang; Xiaojiang Xu; Jun Ding; Lu Yang; Mary T Doan; Peer W F Karmaus; Nathaniel W Snyder; Yingming Zhao; Jian-Liang Li; Xiaoling Li
Journal:  Cell Stem Cell       Date:  2021-01-14       Impact factor: 25.269

9.  Genome-scale screens identify JNK-JUN signaling as a barrier for pluripotency exit and endoderm differentiation.

Authors:  Qing V Li; Gary Dixon; Nipun Verma; Bess P Rosen; Miriam Gordillo; Renhe Luo; Chunlong Xu; Qiong Wang; Chew-Li Soh; Dapeng Yang; Miguel Crespo; Abhijit Shukla; Qing Xiang; Friederike Dündar; Paul Zumbo; Matthew Witkin; Richard Koche; Doron Betel; Shuibing Chen; Joan Massagué; Ralph Garippa; Todd Evans; Michael A Beer; Danwei Huangfu
Journal:  Nat Genet       Date:  2019-05-20       Impact factor: 38.330

10.  lncRNA DIGIT and BRD3 protein form phase-separated condensates to regulate endoderm differentiation.

Authors:  Kaveh Daneshvar; M Behfar Ardehali; Isaac A Klein; Fu-Kai Hsieh; Arcadia J Kratkiewicz; Amin Mahpour; Sabrina O L Cancelliere; Chan Zhou; Brett M Cook; Wenyang Li; Joshua V Pondick; Sweta K Gupta; Sean P Moran; Richard A Young; Robert E Kingston; Alan C Mullen
Journal:  Nat Cell Biol       Date:  2020-09-07       Impact factor: 28.213

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  2 in total

Review 1.  Overcoming the Limitations of Stem Cell-Derived Beta Cells.

Authors:  Mariana V Karimova; Inessa G Gvazava; Ekaterina A Vorotelyak
Journal:  Biomolecules       Date:  2022-06-09

Review 2.  Limitations and challenges of direct cell reprogramming in vitro and in vivo.

Authors:  Yi-Xuan Zhang; Si-Lin Chen; Yu-Mei Li; Yun-Wen Zheng
Journal:  Histol Histopathol       Date:  2022-04-13       Impact factor: 2.130

  2 in total

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