Literature DB >> 34606423

Structural insights into the inactivation of the type I-F CRISPR-Cas system by anti-CRISPR proteins.

Lingguang Yang1,2, Yi Zhang1, Peipei Yin1,2, Yue Feng1.   

Abstract

Phage infection is one of the major threats to prokaryotic survival, and prokaryotes in turn have evolved multiple protection approaches to fight against this challenge. Various delicate mechanisms have been discovered from this eternal arms race, among which the CRISPR-Cas systems are the prokaryotic adaptive immune systems and phages evolve diverse anti-CRISPR (Acr) proteins to evade this immunity. Until now, about 90 families of Acr proteins have been identified, out of which 24 families were verified to fight against subtype I-F CRISPR-Cas systems. Here, we review the structural and biochemical mechanisms of the characterized type I-F Acr proteins, classify their inhibition mechanisms into two major groups and provide insights for future studies of other Acr proteins. Understanding Acr proteins in this context will lead to a variety of practical applications in genome editing and also provide exciting insights into the molecular arms race between prokaryotes and phages.

Entities:  

Keywords:  CRISPR-Cas systems; adaptive immune system; anti-CRISPR; structure; type I-F system

Mesh:

Substances:

Year:  2021        PMID: 34606423      PMCID: PMC8782179          DOI: 10.1080/15476286.2021.1985347

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.766


  58 in total

1.  Structural Variation of Type I-F CRISPR RNA Guided DNA Surveillance.

Authors:  Patrick Pausch; Hanna Müller-Esparza; Daniel Gleditzsch; Florian Altegoer; Lennart Randau; Gert Bange
Journal:  Mol Cell       Date:  2017-08-03       Impact factor: 17.970

2.  Structure Reveals Mechanisms of Viral Suppressors that Intercept a CRISPR RNA-Guided Surveillance Complex.

Authors:  Saikat Chowdhury; Joshua Carter; MaryClare F Rollins; Sarah M Golden; Ryan N Jackson; Connor Hoffmann; Lyn'Al Nosaka; Joseph Bondy-Denomy; Karen L Maxwell; Alan R Davidson; Elizabeth R Fischer; Gabriel C Lander; Blake Wiedenheft
Journal:  Cell       Date:  2017-03-23       Impact factor: 41.582

3.  Native CRISPR-Cas-Mediated Genome Editing Enables Dissecting and Sensitizing Clinical Multidrug-Resistant P. aeruginosa.

Authors:  Zeling Xu; Ming Li; Yanran Li; Huiluo Cao; Lu Miao; Zhaochao Xu; Yusuke Higuchi; Seiji Yamasaki; Kunihiko Nishino; Patrick C Y Woo; Hua Xiang; Aixin Yan
Journal:  Cell Rep       Date:  2019-11-05       Impact factor: 9.423

4.  CRISPR RNA and anti-CRISPR protein binding to the Xanthomonas albilineans Csy1-Csy2 heterodimer in the type I-F CRISPR-Cas system.

Authors:  Suji Hong; Donghyun Ka; Seo Jeong Yoon; Nayoung Suh; Migyeong Jeong; Jeong-Yong Suh; Euiyoung Bae
Journal:  J Biol Chem       Date:  2018-01-18       Impact factor: 5.157

5.  Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense.

Authors:  Blake Wiedenheft; Kaihong Zhou; Martin Jinek; Scott M Coyle; Wendy Ma; Jennifer A Doudna
Journal:  Structure       Date:  2009-06-10       Impact factor: 5.006

6.  Discovery of widespread type I and type V CRISPR-Cas inhibitors.

Authors:  Nicole D Marino; Jenny Y Zhang; Adair L Borges; Alexander A Sousa; Lina M Leon; Benjamin J Rauch; Russell T Walton; Joel D Berry; J Keith Joung; Benjamin P Kleinstiver; Joseph Bondy-Denomy
Journal:  Science       Date:  2018-09-06       Impact factor: 47.728

Review 7.  Anti-CRISPRs go viral: The infection biology of CRISPR-Cas inhibitors.

Authors:  Yuping Li; Joseph Bondy-Denomy
Journal:  Cell Host Microbe       Date:  2021-01-13       Impact factor: 21.023

8.  Repurposing type I-F CRISPR-Cas system as a transcriptional activation tool in human cells.

Authors:  Yuxi Chen; Jiaqi Liu; Shengyao Zhi; Qi Zheng; Wenbin Ma; Junjiu Huang; Yizhi Liu; Dan Liu; Puping Liang; Zhou Songyang
Journal:  Nat Commun       Date:  2020-06-19       Impact factor: 14.919

9.  Anti-CRISPR AcrIF9 functions by inducing the CRISPR-Cas complex to bind DNA non-specifically.

Authors:  Wang-Ting Lu; Chantel N Trost; Hanna Müller-Esparza; Lennart Randau; Alan R Davidson
Journal:  Nucleic Acids Res       Date:  2021-04-06       Impact factor: 16.971

10.  A high-resolution (1.2 Å) crystal structure of the anti-CRISPR protein AcrIF9.

Authors:  Gi Eob Kim; So Yeon Lee; Hyun Ho Park
Journal:  FEBS Open Bio       Date:  2020-11-05       Impact factor: 2.693

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  1 in total

1.  The structure of AcrIE4-F7 reveals a common strategy for dual CRISPR inhibition by targeting PAM recognition sites.

Authors:  Sung-Hyun Hong; Gyujin Lee; Changkon Park; Jasung Koo; Eun-Hee Kim; Euiyoung Bae; Jeong-Yong Suh
Journal:  Nucleic Acids Res       Date:  2022-02-28       Impact factor: 16.971

  1 in total

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