| Literature DB >> 34604507 |
Andrew M Bishara1,2, Dmytro S Lituiev2, Dieter Adelmann1, Rishi P Kothari1, Darren J Malinoski3, Jacob D Nudel4,5, Mitchell B Sally3, Ryutaro Hirose6, Dexter D Hadley2, Claus U Niemann1,6.
Abstract
Early prediction of whether a liver allograft will be utilized for transplantation may allow better resource deployment during donor management and improve organ allocation. The national donor management goals (DMG) registry contains critical care data collected during donor management. We developed a machine learning model to predict transplantation of a liver graft based on data from the DMG registry.Entities:
Year: 2021 PMID: 34604507 PMCID: PMC8478404 DOI: 10.1097/TXD.0000000000001212
Source DB: PubMed Journal: Transplant Direct ISSN: 2373-8731
Categorical variables included in the machine learning models
| Demographic | Medical history | Transplant logistical information | DMGs met |
|---|---|---|---|
|
| History of cancer |
|
|
| Female | History of diabetes | Donation after circulatory death | Authorization |
| Male | History of myocardial infarction | Extended criteria donor | h |
|
| History of hypertension | Extended criteria donor with donation after circulatory death |
|
| Latino |
| Standard criteria donor | Mean arterial pressure between 60–110 mm Hg |
| Non-Latino | Hepatitis B surface antibody status | Unknown | Central venous pressure between 4–12 mm Hg |
| Unknown | Hepatitis B surface antigen status |
| Ejection fraction ≥50% |
|
| Hepatitis B core antibody status | A | One or fewer low-dose vasopressors |
| Asian | HCV antibody | B | Arterial blood gas pH between 7.3–7.5 |
| Black | CDC high risk for HIV | AB | Pa |
| Native American | HIV status | O | Serum sodium ≤155 mEq/L |
| Pacific Islander |
|
| Urine output ≥0.5 mL/kg/h over 4 h |
| White | Referral on which day of week? | Anoxia | Glucose ≤180 mg/dL |
| Multiracial | Referral on which day of year? | Cerebrovascular/stroke | |
| Referral on last day of month? | Head trauma | ||
| Referral on first day of month? | CNS tumor | ||
| Referral on last day of quarter? | Other, specify | ||
| Referral on first day of quarter? |
| ||
| Referral on last day of year? |
| ||
| Referral on first day of year? |
|
Values are Latino vs non-Latino.
Defined as dopamine at ≤10 µg/kg/min, neo synephrine at ≤60 µg/min, and norepinephrine at ≤10 µg/min.
Donor management goals were defined according to the United Network for Organ Sharing Region 5 donor management goals[10] and modified glucose goal.[11]
CDC, Centers for Disease Control and Prevention; CNS, central nervous system; DMG, donor management goal; FIO2, fraction of inspired oxygen; HCV, hepatitis C virus; OPO, organ procurement organization; Pao2, Po2 in arterial blood.
Donor characteristics
| Liver not transplanted | Liver transplanted |
| |
|---|---|---|---|
| Total number of donors | 4374 | 9255 | |
| Age, y | 38.0 (25.0–52.0) | 44.0 (29.0–55.0) | <0.001 |
| Gender | |||
| Male | 5753 (62.2) | 2671 (61.1) | 0.226 |
| Female | 3502 (37.8) | 1703 (38.9) | |
| Body mass index, kg/m2 | 26.5 (22.9–30.9) | 27.2 (23.2–32.3) | <0.001 |
| Weight, kg | 78.9 (24.0) | 80.4 (28.7) | 0.004 |
| Height, cm | 170.2 (163.0–178.0) | 170.0 (162.6–178.0) | <0.001 |
| Race | |||
| Asian | 430 (4.6) | 208 (4.8) | <0.001 |
| Black | 1232 (13.3) | 302 (6.9) | |
| Multiracial | 71 (0.8) | 37 (0.8) | |
| Native American | 33 (0.4) | 40 (0.9) | |
| Pacific Islander | 46 (0.5) | 17 (0.4) | |
| White | 7443 (80.4) | 3770 (86.2) | |
| Cause of death | |||
| Anoxia | 3185 (34.4) | 1579 (36.1) | <0.001 |
| Cerebrovascular/stroke | 2718 (29.4) | 1424 (32.6) | |
| Head trauma | 3111 (33.6) | 1220 (27.9) | |
| Other, specify | 198 (2.1) | 137 (3.1) | |
| CNS tumor | 43 (0.5) | 12 (0.3) | |
| Unknown | 0 (0.0) | 2 (0.0) | |
| Donor type | |||
| SCD | 6993 (75.6) | 2175 (49.7) | <0.001 |
| ECD | 1767 (19.1) | 844 (19.3) | |
| ECD/DCD | 31 (0.3) | 167 (3.8) | |
| DCD | 462 (5.0) | 1186 (27.1) | |
| Unknown | 1 (0.0) | 2 (0.0) | |
| History of diabetes | |||
| No | 8180 (88.4) | 2950 (67.4) | <0.001 |
| Unknown | 77 (0.8) | 949 (21.7) | |
| Yes, 0–5 y | 337 (3.6) | 192 (4.4) | |
| Yes, 6–10 y | 187 (2.0) | 84 (1.9) | |
| Yes, >10 y | 377 (4.1) | 155 (3.5) | |
| Yes, duration unknown | 97 (1.0) | 44 (1.0) | |
| History of hypertension | |||
| No | 6372 (68.8) | 2597 (59.4) | <0.001 |
| Yes | 2874 (31.1) | 875 (20.0) | |
| Unknown | 9 (0.1) | 902 (20.6) | |
| Hepatitis B | |||
| Negative | 8830 (95.4) | 3264 (74.6) | <0.001 |
| Unknown | 0 (0.0) | 898 (20.5) | |
| Positive | 419 (4.5) | 205 (4.7) | |
| Test not done | 6 (0.1) | 7 (0.2) | |
| Hepatitis C | |||
| Negative | 8909 (96.3) | 3288 (75.2) | <0.001 |
| Unknown | 0 (0.0) | 898 (20.5) | |
| Positive | 345 (3.7) | 183 (4.2) | |
| Test not done | 1 (0.0) | 5 (0.1) | |
| CDC risk HIV | |||
| No | 7118 (76.9) | 2833 (64.8) | <0.001 |
| Yes | 2132 (23.0) | 641 (14.7) | |
| Unknown | 5 (0.1) | 900 (20.6) | |
| AST at 12–18 h after authorization, units/L | 49.0 (28.0–98.0) | 59.0 (31.0–123.8) | <0.001 |
| ALT at 12–18 h after authorization, units/L | 41.0 (23.0–87.0) | 44.0 (25.0–96.0) | 0.001 |
| Total bilirubin at h after authorization, mg/dL | 0.7 (0.5–1.1) | 0.8 (0.5–1.4) | <0.001 |
| Sodium at h after authorization, mEq/L | 148.0 (142.0–154.0) | 147.0 (142.0–154.0) | 0.002 |
| Biopsy performed | |||
| No | 6794 (73.4) | 3443 (78.7) | <0.001 |
| Yes | 2461 (26.6) | 931 (21.3) | |
The 2 groups were compared and P calculated using χ2 test for categorical variables, the Kruskal-Wallis test for variables not normally distributed, and the Student t-test for variables normally distributed.
Continuous variables are summarized by median (interquartile range), and categorical variables are summarized by n (%). CDC high-risk criteria means that donors were at higher risk of blood-borne diseases, such as HIV.
ALT, alanine aminotransferase; AST, aspartate aminotransferase; CDC, Centers for Disease Control and Prevention, CNS, central nervous system; DCD, donor/donation after circulatory death; ECD, expanded-criteria donor; SCD, standard criteria donor.
Continuous variables included in the machine learning models
| Demographic | Medication information | Laboratory values | Respiratory values | Miscellaneous physiologic |
|---|---|---|---|---|
| Age, y |
| |||
| Weight, kg | Dopamine infusion dose, µg/kg/min | Creatinine, mg/dL | Arterial blood gas, pH | Mean arterial pressure, mm Hg |
| Height, cm | Neosynephrine infusion dose, µg/kg/min | Serum lactate levels, mmol/L | Pa | Central venous pressure, mm Hg |
| Body mass index, kg/m2 | Norepinephrine infusion dose, µg/kg/min | Serum sodium, mEq/L | Pa | Urine output, mL/4 h |
| Epinephrine infusion dose, µg/kg/min | Serum glucose, mmol/L | FIO2 | Temperature, °C | |
|
| Vasopressin infusion dose, units/h | Serum direct bilirubin, mg/dL | Peak inspiratory pressure, cm H2O | |
| Referral d | Dobutamine infusion dose, µg/kg/min | Serum insulin, mIU/L | ||
| Referral wk | Number of total vasopressors | |||
| Referral mo |
|
|
|
|
| Referral y |
| |||
| Dopamine infusion dose, µg/kg/min | Creatinine, mg/dL | Arterial blood gas, pH | Mean arterial pressure, mm Hg | |
| Neosynephrine infusion dose, µg/kg/min | Serum lactate levels, mmol/L | Pa | Urine output, mL/4 h | |
| Norepinephrine infusion dose, µg/kg/min | Serum sodium, mEq/L | Pa | Temperature, °C | |
| Epinephrine infusion dose, µg/kg/min | Serum glucose, mmol/L | FIO2 | ||
| Vasopressin infusion dose, units/h | ||||
| Dobutamine infusion dose, µg/kg/min | ||||
| Insulin infusion dose, units/h | ||||
| Number of total vasopressors | ||||
C, Celcius; FIO2, fraction of inspired oxygen; Pao2, partial pressure of oxygen in arterial blood.
FIGURE 1.Receiver operator characteristic curves for 4 different models. Models developed in this paper include GBMs, RF, LR, and ANN. Bar plot on the right of the figure shows the numerical AUC of the receiver operator characteristic with a visual representation of the 95% confidence interval. AUC, area under the curve; ANN, artificial neural network; GBM, gradient boosting machine; LR, logistic regression; RF, random forest.
FIGURE 2.Feature importance of each variable in the best (gradient boosting machine) model. The x-axis is the relative importance of each variable measured as the relative quantity the prediction accuracy decreases when only the variable of interest is randomly permuted in the training set. These values are calculated by randomly permuting 1 variable at a time and measuring the decrease in accuracy of the model. Note that, in this case, the models do not explicitly divulge a positive or negative relationship of these variables to the outcome (eg, does increasing or decreasing age make liver transplantation more likely). ABG = pH. ABG, arterial blood gas; bili, bilirubin; BMI, body mass index; DCD, donor after circulatory death; MAP, mean arterial pressure; PF ratio, ratio of arterial blood concentration of oxygen over fraction of inspired oxygen.
FIGURE 3.This PDP shows the relationship within the model between age and the outcome of interest. It measures the variation in prediction for every row of the training set as the age is iteratively changed to every possible value seen in the training set for that variable (blue lines). The yellow and black line shows the average of the trend of the relationship of the many individual blue lines. Values above 0 on these plots suggest the variable is positively correlated with a prediction of nontransplantation, whereas negative values suggest correlation with prediction of transplantation. PDP, partial dependency plot.
FIGURE 9.This PDP shows the relationship within the model between mean arterial pressure at authorization and the outcome of interest. It measures the variation in prediction for every row of the training set as the mean arterial pressure at authorization is iteratively changed to every possible value seen in the training set for that variable (blue lines). The yellow and black line shows the average of the trend of the relationship of the many individual blue lines. Values above 0 on these plots suggest the variable is positively correlated with a prediction of nontransplantation, whereas negative values suggest correlation with prediction of transplantation. PDP, partial dependency plot.
FIGURE 10.This figure shows a timeline of the events occurring during the donor management process and highlights that our model predicts the outcome much earlier than other published models.