| Literature DB >> 34604036 |
He Sui1, Ruhang Ma1,2, Lin Liu1, Yaozong Gao3, Wenhai Zhang3, Zhanhao Mo1.
Abstract
OBJECTIVE: To develop a deep learning-based model using esophageal thickness to detect esophageal cancer from unenhanced chest CT images.Entities:
Keywords: chest CT; convolutional neural network; deep learning; esophageal cancer; v-net
Year: 2021 PMID: 34604036 PMCID: PMC8481957 DOI: 10.3389/fonc.2021.700210
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
Patient characteristics in the data set 1 and data set 2.
| Data set 1 | Data set 2 | ||||||
|---|---|---|---|---|---|---|---|
| Training (N = 99) | Validation (N = 42) | ||||||
| Age (yr, mean ± sd) | 60.15 ± 8.61 | 50.76 ± 11.44 | 50.83 ± 9.72 | ||||
| Sex | |||||||
| male | 94 | 40 | 45 | ||||
| female | 5 | 2 | 7 | ||||
| Lesion location(N=) | |||||||
| Ut | 9 | 3 | 5 | ||||
| Mt | 65 | 26 | 35 | ||||
| Lt | 25 | 13 | 12 | ||||
| T stage(N=) | |||||||
| T1 | 18 | 9 | 24 | ||||
| T2 | 32 | 9 | 14 | ||||
| T3 | 43 | 19 | 9 | ||||
| T4 | 6 | 5 | 0 | ||||
| Tumor size, cm | |||||||
| mean ± sd | 1.27 ± 0.40 | 1.53 ± 0.61 | 0.87 ± 0.12 | ||||
| range | 0.6–2.2 | 0.6–3.2 | 0.6–1.2 | ||||
| squamous cell carcinoma | 90 | 40 | 46 | ||||
| adenocarcinoma | 9 | 2 | 6 | ||||
Ut, upper thoracic esophagus; Mt, middle thoracic esophagus; Lt, lower thoracic esophagus.
mean ± SD means mean ± standard deviation, N means quantity.
Non-esophageal cancer subject characteristics in the data set 1 and data set 2.
| Data set 1 | Data set 2 | ||
|---|---|---|---|
| Training (N = 223) | Validation (N = 50) | ||
| Age (yr, mean ± sd) | 51.20 ± 10.71 | 43.00 ± 12.93 | 42.08 ± 12.65 |
| Sex | |||
| male | 98 | 34 | 36 |
| female | 125 | 16 | 12 |
mean ± SD means mean ± standard deviation, N means quantity.
Figure 1The network architecture of VB-Net. Down block is a down-sampling network block. Its detailed architecture is shown in the left-bottom corner of the figure, where each rectangle is a convolutional layer. Up block is an up-sampling network block. Its details are shown in the right-bottom corner of the figure.
Figure 2Deep learning-based model formation process.
Figure 3The training loss (Dice loss) for the segmentation model and the Dice coefficients of the segmentation models at different training epochs on our test data set.
Figure 4The receiver operating characteristic (ROC) curve in recognizing esophageal cancer patients on unenhanced chest CT scans. Sensitivity and specificity in the figure are calculated by varying the threshold of average diameter.
Figure 5Detection results of the 48 normal esophagus and 52 missed esophageal cancers (date set 2) by the deep learning-based model and radiologists.
The outcomes detected by the deep learning-based model, the three radiologists independently, and with the assistance of the deep learning-based model.
| Candidate cancers | True positives | False positives | True negatives | False negatives | |||
|---|---|---|---|---|---|---|---|
| Ut/Mt/Lt | Ut/Mt/Lt | Ut/Mt/Lt | Ut/Mt/Lt | Ut/Mt/Lt | |||
| The deep learning-based model | 8/37/19 | 2/25/9 | 6/12/10 | 7/26/11 | 3/10/3 | ||
| Radiologist A independently | 5/18/3 | 2/8/3 | 3/10/0 | 10/24/12 | 3/27/9 | ||
| Radiologist B independently | 7/19/5 | 3/10/3 | 4/9/2 | 13/21/11 | 2/25/9 | ||
| Radiologist C independently | 7/13/9 | 4/9/1 | 3/4/8 | 11/25/10 | 1/26/11 | ||
| Radiologist independently(avg.) | 6.3/16.7/5.7 | 3/9/2.3 | 3.3/7.7/3.3 | 11.3/23.4/11 | 2/26/9.7 | ||
| Radiologist A with the model | 11/32/13 | 5/29/6 | 6/3/7 | 13/21/13 | 0/6/6 | ||
| Radiologist B with the model | 10/35/13 | 4/31/7 | 6/4/6 | 12/21/13 | 1/4/5 | ||
| Radiologist C with the model | 12/30/13 | 4/28/7 | 8/2/6 | 14/23/9 | 1/7/5 | ||
| Radiologist with the model(avg.) | 11/32.3/13 | 4.3/29.3/6.7 | 6.7/3/6.3 | 13/21.7/11.6 | 0.7/5.7/5.3 | ||
| P Value (DM | 0.002 | 0.002 | 0.002 | 0.038 | 0.002 | ||
| P Value (DM | 0.002 | 0.000 | 0.130 | 0.184 | 0.000 | ||
| P Value (RI | 0.013 | 0.039 | 0.001 | 0.020 | 0.039 | ||
Avg. means average. Ut, upper thoracic esophagus; Mt, middle thoracic esophagus; Lt, means lower thoracic esophagus, DM, The deep learning-based model; RI, Radiologist independently; RM, Radiologist with the model.
The sensitivity, specificity, and accuracy in diagnosing by the deep learning-based model and radiologist with or without the assistance of the deep learning-based model.
| Sensitivity | Specificity | Accuracy | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Ut/Mt/Lt | Ut/Mt/Lt | Ut/Mt/Lt | |||||||
| The deep learning-based model | 40%/71%/75% | 54%/68%/52% | 50%/75%/61% | ||||||
| Radiologist A independently | 40%/23%/25% | 77%/71%/100% | 68%/46%/63% | ||||||
| Radiologist B independently | 60%/29%/25% | 76%/70%/85% | 73%/48%/56% | ||||||
| Radiologist C independently | 80%/26%/8% | 79%/86%/89% | 79%/53%/37% | ||||||
| Radiologist independently(avg.) | 60%/26%/19% | 77%/75%/77% | 73%/49%/51% | ||||||
| Radiologist A with the model | 100%/83%/50% | 68%/88%/65% | 75%/85%/59% | ||||||
| Radiologist B with the model | 80%/89%/58% | 67%/84%/68% | 70%/87%/65% | ||||||
| Radiologist C with the model | 80%/80%/58% | 64%/92%/60% | 67%/85%/59% | ||||||
| Radiologist with the model(avg.) | 86%/84%/56% | 66%/88%/65% | 70%/85%/61% | ||||||
Avg. means average.
Figure 6(A) This case was detected correctly by the deep learning-based model, but the radiologist missed. (B) This non-esophageal cancer subject was misdiagnosed as positive by the model due to the abnormal filling of the esophageal cavity. (C) This case was confirmed pathologically as esophageal inflammation, and the model mistaken it for esophageal cancer. (D) This case was successfully detected by the radiologist, but the model missed the diagnosis.
The quantitative comparison between VB-Net and U-Net.
| U-Net | VB-Net (chosen model) | |
|---|---|---|
| Loss function | Dice loss | Dice loss |
| Model size | 459 MB | 11.1 MB |
| Segmentation Time | 4.24 seconds | 0.39 second |
| Dice coefficients | 0.874 ± 0.053 | 0.881 ± 0.057 |
| Hausdorff distance | 5.54 ± 7.41 mm | 5.53 ± 6.39 mm |