Literature DB >> 34601817

CRISPR screens guide the way for PARP and ATR inhibitor biomarker discovery.

Emily M Schleicher1, George-Lucian Moldovan1.   

Abstract

DNA repair pathways are heavily studied for their role in cancer initiation and progression. Due to the large amount of inherent DNA damage in cancer cells, tumor cells profoundly rely on proper DNA repair for efficient cell cycle progression. Several current chemotherapeutics promote excessive DNA damage in cancer cells, thus leading to cell death during cell cycle progression. However, if the tumor has efficient DNA repair mechanisms, DNA-damaging therapeutics may not be as effective. Therefore, directly inhibiting DNA repair pathways alone and in combination with chemotherapeutics that cause DNA damage may result in improved clinical outcomes. Nevertheless, tumors can acquire resistance to DNA repair inhibitors. It is essential to understand the genetic mechanisms underlying this resistance. Genome-wide CRISPR screening has emerged as a powerful tool to identify biomarkers of resistance or sensitivity to DNA repair inhibitors. CRISPR knockout and CRISPR activation screens can be designed to investigate how the loss or overexpression of any human gene impacts resistance or sensitivity to specific inhibitors. This review will address the role of CRISPR screening in identifying biomarkers of resistance and sensitivity to DNA repair pathway inhibitors. We will focus on inhibitors targeting the PARP1 and ATR enzymes, and how the biomarkers identified from CRISPR screens can help inform the treatment plan for cancer patients.
© 2021 Federation of European Biochemical Societies.

Entities:  

Keywords:  ATR; BRCA; CRISPR screens; DNA repair; PARP; genetic stability

Year:  2021        PMID: 34601817      PMCID: PMC9003637          DOI: 10.1111/febs.16217

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  85 in total

Review 1.  The New State of the Art: Cas9 for Gene Activation and Repression.

Authors:  Marie F La Russa; Lei S Qi
Journal:  Mol Cell Biol       Date:  2015-09-14       Impact factor: 4.272

2.  A probability-based approach for the analysis of large-scale RNAi screens.

Authors:  Renate König; Chih-yuan Chiang; Buu P Tu; S Frank Yan; Paul D DeJesus; Angelica Romero; Tobias Bergauer; Anthony Orth; Ute Krueger; Yingyao Zhou; Sumit K Chanda
Journal:  Nat Methods       Date:  2007-09-09       Impact factor: 28.547

3.  Highly parallel identification of essential genes in cancer cells.

Authors:  Biao Luo; Hiu Wing Cheung; Aravind Subramanian; Tanaz Sharifnia; Michael Okamoto; Xiaoping Yang; Greg Hinkle; Jesse S Boehm; Rameen Beroukhim; Barbara A Weir; Craig Mermel; David A Barbie; Tarif Awad; Xiaochuan Zhou; Tuyen Nguyen; Bruno Piqani; Cheng Li; Todd R Golub; Matthew Meyerson; Nir Hacohen; William C Hahn; Eric S Lander; David M Sabatini; David E Root
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-17       Impact factor: 11.205

4.  CRISPR-Cas9 genome editing induces a p53-mediated DNA damage response.

Authors:  Emma Haapaniemi; Sandeep Botla; Jenna Persson; Bernhard Schmierer; Jussi Taipale
Journal:  Nat Med       Date:  2018-06-11       Impact factor: 53.440

Review 5.  PARP Inhibitors: Extending Benefit Beyond BRCA-Mutant Cancers.

Authors:  Patrick G Pilié; Carl M Gay; Lauren A Byers; Mark J O'Connor; Timothy A Yap
Journal:  Clin Cancer Res       Date:  2019-02-13       Impact factor: 12.531

6.  The dystonia gene THAP1 controls DNA double-strand break repair choice.

Authors:  Kenta Shinoda; Dali Zong; Elsa Callen; Wei Wu; Lavinia C Dumitrache; Frida Belinky; Raj Chari; Nancy Wong; Momoko Ishikawa; Andre Stanlie; Trisha Multhaupt-Buell; Nutan Sharma; Laurie Ozelius; Michelle Ehrlich; Peter J McKinnon; André Nussenzweig
Journal:  Mol Cell       Date:  2021-04-14       Impact factor: 19.328

7.  Parallel CRISPR-Cas9 screens clarify impacts of p53 on screen performance.

Authors:  Anne Ramsay Bowden; David A Morales-Juarez; Matylda Sczaniecka-Clift; Maria Martin Agudo; Natalia Lukashchuk; John Christopher Thomas; Stephen P Jackson
Journal:  Elife       Date:  2020-05-22       Impact factor: 8.140

8.  Phase I Trial of First-in-Class ATR Inhibitor M6620 (VX-970) as Monotherapy or in Combination With Carboplatin in Patients With Advanced Solid Tumors.

Authors:  Timothy A Yap; Brent O'Carrigan; Marina S Penney; Joline S Lim; Jessica S Brown; Maria J de Miguel Luken; Nina Tunariu; Raquel Perez-Lopez; Daniel Nava Rodrigues; Ruth Riisnaes; Ines Figueiredo; Suzanne Carreira; Brian Hare; Katherine McDermott; Saira Khalique; Chris T Williamson; Rachael Natrajan; Stephen J Pettitt; Christopher J Lord; Udai Banerji; John Pollard; Juanita Lopez; Johann S de Bono
Journal:  J Clin Oncol       Date:  2020-06-22       Impact factor: 44.544

9.  Identification of regulators of poly-ADP-ribose polymerase inhibitor response through complementary CRISPR knockout and activation screens.

Authors:  Kristen E Clements; Emily M Schleicher; Tanay Thakar; Anastasia Hale; Ashna Dhoonmoon; Nathanial J Tolman; Anchal Sharma; Xinwen Liang; Yuka Imamura Kawasawa; Claudia M Nicolae; Hong-Gang Wang; Subhajyoti De; George-Lucian Moldovan
Journal:  Nat Commun       Date:  2020-11-30       Impact factor: 14.919

10.  A cell-based screen identifies ATR inhibitors with synthetic lethal properties for cancer-associated mutations.

Authors:  Luis I Toledo; Matilde Murga; Rafal Zur; Rebeca Soria; Antonio Rodriguez; Sonia Martinez; Julen Oyarzabal; Joaquin Pastor; James R Bischoff; Oscar Fernandez-Capetillo
Journal:  Nat Struct Mol Biol       Date:  2011-05-08       Impact factor: 15.369

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  2 in total

1.  The TIP60-ATM axis regulates replication fork stability in BRCA-deficient cells.

Authors:  Emily M Schleicher; Ashna Dhoonmoon; Lindsey M Jackson; Jude B Khatib; Claudia M Nicolae; George-Lucian Moldovan
Journal:  Oncogenesis       Date:  2022-06-18       Impact factor: 6.524

2.  Complementary CRISPR genome-wide genetic screens in PARP10-knockout and overexpressing cells identify synthetic interactions for PARP10-mediated cellular survival.

Authors:  Jude B Khatib; Emily M Schleicher; Lindsey M Jackson; Ashna Dhoonmoon; George-Lucian Moldovan; Claudia M Nicolae
Journal:  Oncotarget       Date:  2022-09-28
  2 in total

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