Literature DB >> 34593630

Automated design of pulse sequences for magnetic resonance fingerprinting using physics-inspired optimization.

Stephen P Jordan1, Siyuan Hu2, Ignacio Rozada3, Debra F McGivney2, Rasim Boyacioğlu4, Darryl C Jacob5, Sherry Huang2, Michael Beverland1, Helmut G Katzgraber1, Matthias Troyer1, Mark A Griswold4, Dan Ma6.   

Abstract

Magnetic resonance fingerprinting (MRF) is a method to extract quantitative tissue properties such as [Formula: see text] and [Formula: see text] relaxation rates from arbitrary pulse sequences using conventional MRI hardware. MRF pulse sequences have thousands of tunable parameters, which can be chosen to maximize precision and minimize scan time. Here, we perform de novo automated design of MRF pulse sequences by applying physics-inspired optimization heuristics. Our experimental data suggest that systematic errors dominate over random errors in MRF scans under clinically relevant conditions of high undersampling. Thus, in contrast to prior optimization efforts, which focused on statistical error models, we use a cost function based on explicit first-principles simulation of systematic errors arising from Fourier undersampling and phase variation. The resulting pulse sequences display features qualitatively different from previously used MRF pulse sequences and achieve fourfold shorter scan time than prior human-designed sequences of equivalent precision in [Formula: see text] and [Formula: see text] Furthermore, the optimization algorithm has discovered the existence of MRF pulse sequences with intrinsic robustness against shading artifacts due to phase variation.

Entities:  

Keywords:  magnetic resonance fingerprinting; magnetic resonance imaging; optimization; pulse sequence design

Mesh:

Year:  2021        PMID: 34593630      PMCID: PMC8501900          DOI: 10.1073/pnas.2020516118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

1.  Low rank alternating direction method of multipliers reconstruction for MR fingerprinting.

Authors:  Jakob Assländer; Martijn A Cloos; Florian Knoll; Daniel K Sodickson; Jürgen Hennig; Riccardo Lattanzi
Journal:  Magn Reson Med       Date:  2017-03-05       Impact factor: 4.668

2.  Twenty new digital brain phantoms for creation of validation image data bases.

Authors:  Berengère Aubert-Broche; Mark Griffin; G Bruce Pike; Alan C Evans; D Louis Collins
Journal:  IEEE Trans Med Imaging       Date:  2006-11       Impact factor: 10.048

3.  MR fingerprinting using fast imaging with steady state precession (FISP) with spiral readout.

Authors:  Yun Jiang; Dan Ma; Nicole Seiberlich; Vikas Gulani; Mark A Griswold
Journal:  Magn Reson Med       Date:  2014-12-09       Impact factor: 4.668

4.  Sliding-slab three-dimensional TSE imaging with a spiral-In/Out readout.

Authors:  Zhiqiang Li; Dinghui Wang; Ryan K Robison; Nicholas R Zwart; Michael Schär; John P Karis; James G Pipe
Journal:  Magn Reson Med       Date:  2015-03-07       Impact factor: 4.668

5.  Development of a Combined MR Fingerprinting and Diffusion Examination for Prostate Cancer.

Authors:  Alice C Yu; Chaitra Badve; Lee E Ponsky; Shivani Pahwa; Sara Dastmalchian; Matthew Rogers; Yun Jiang; Seunghee Margevicius; Mark Schluchter; William Tabayoyong; Robert Abouassaly; Debra McGivney; Mark A Griswold; Vikas Gulani
Journal:  Radiology       Date:  2017-02-10       Impact factor: 11.105

6.  Slice profile and B1 corrections in 2D magnetic resonance fingerprinting.

Authors:  Dan Ma; Simone Coppo; Yong Chen; Debra F McGivney; Yun Jiang; Shivani Pahwa; Vikas Gulani; Mark A Griswold
Journal:  Magn Reson Med       Date:  2017-01-11       Impact factor: 4.668

7.  SVD compression for magnetic resonance fingerprinting in the time domain.

Authors:  Debra F McGivney; Eric Pierre; Dan Ma; Yun Jiang; Haris Saybasili; Vikas Gulani; Mark A Griswold
Journal:  IEEE Trans Med Imaging       Date:  2014-07-10       Impact factor: 10.048

8.  A 2D spiral turbo-spin-echo technique.

Authors:  Zhiqiang Li; John P Karis; James G Pipe
Journal:  Magn Reson Med       Date:  2018-03-09       Impact factor: 4.668

9.  High-resolution 3D MR Fingerprinting using parallel imaging and deep learning.

Authors:  Yong Chen; Zhenghan Fang; Sheng-Che Hung; Wei-Tang Chang; Dinggang Shen; Weili Lin
Journal:  Neuroimage       Date:  2019-11-02       Impact factor: 6.556

10.  Simultaneous T1 and T2 Brain Relaxometry in Asymptomatic Volunteers using Magnetic Resonance Fingerprinting.

Authors:  Chaitra Badve; Alice Yu; Matthew Rogers; Dan Ma; Yiying Liu; Mark Schluchter; Jeffrey Sunshine; Mark Griswold; Vikas Gulani
Journal:  Tomography       Date:  2015-12
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  4 in total

Review 1.  MR fingerprinting of the prostate.

Authors:  Wei-Ching Lo; Ananya Panda; Yun Jiang; James Ahad; Vikas Gulani; Nicole Seiberlich
Journal:  MAGMA       Date:  2022-04-13       Impact factor: 2.533

2.  Low-rank inversion reconstruction for through-plane accelerated radial MR fingerprinting applied to relaxometry at 0.35 T.

Authors:  Nikolai J Mickevicius; Carri K Glide-Hurst
Journal:  Magn Reson Med       Date:  2022-04-10       Impact factor: 3.737

3.  MR Fingerprinting with b-Tensor Encoding for Simultaneous Quantification of Relaxation and Diffusion in a Single Scan.

Authors:  Maryam Afzali; Lars Mueller; Ken Sakaie; Siyuan Hu; Yong Chen; Filip Szczepankiewicz; Mark A Griswold; Derek K Jones; Dan Ma
Journal:  Magn Reson Med       Date:  2022-06-17       Impact factor: 3.737

Review 4.  Artificial intelligence in cardiac magnetic resonance fingerprinting.

Authors:  Carlos Velasco; Thomas J Fletcher; René M Botnar; Claudia Prieto
Journal:  Front Cardiovasc Med       Date:  2022-09-20
  4 in total

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