| Literature DB >> 34589931 |
Wade T Iams1,2, Prasad R Kopparapu1, Yingjun Yan1, Anel Muterspaugh1,2, Zhiguo Zhao1, Heidi Chen1, Christopher Cann1, Sally York1,2, Leora Horn1,2, Kristin Ancell1,2, Kenneth Wyman1,2, Caterina Bertucci3, Tristan Shaffer3, Lauren A Hodsdon3, Kavita Garg3, Seyed Ali Hosseini3, Lee P Lim3, Christine M Lovly1,2.
Abstract
INTRODUCTION: Most patients (70%) with limited-stage SCLC (LS-SCLC) who are treated with curative-intent therapy suffer disease relapse and cancer-related death. We evaluated circulating tumor DNA (ctDNA) as a predictor of disease relapse and death after definitive therapy in patients with LS-SCLC.Entities:
Keywords: Circulating tumor DNA; Liquid biopsy; Minimal residual disease; Next-generation sequencing; Small cell lung cancer
Year: 2020 PMID: 34589931 PMCID: PMC8474488 DOI: 10.1016/j.jtocrr.2020.100024
Source DB: PubMed Journal: JTO Clin Res Rep ISSN: 2666-3643
Figure 1Study schema. All patients with limited-stage SCLC with blood collection within 2 months of completion of definitive chemoradiation or surgical resection were included. Patients were divided into the following two broad categories: (1) patients in whom we never detected tumor-associated cell-free DNA (circulating tumor DNA [ctDNA]; n = 8) after definitive therapy and (2) patients in whom we ever detected circulating tumor DNA after definitive therapy (n = 15). CT, computed tomography.
Baseline Demographics of Patients With Limited-Stage SCLC in Our Study Cohort
| Overall (N = 23) | ctDNA Never Detected After Definitive Treatment (n = 8) | ctDNA Ever Detected After Definitive Treatment (n = 15) | |
|---|---|---|---|
| Median age, y (range) | 70 (43–82) | 66 (43–75) | 70 (53–82) |
| Median follow-up, d (range) | 524 (70–1474) | 748 (331–1474) | 510 (70–860) |
| Sex, no. (%) | |||
| Female | 16 (70) | 5 (63) | 11 (73) |
| Male | 7 (30) | 3 (37) | 4 (27) |
| Ethnicity, no. (%) | |||
| White | 20 (88) | 12 (80) | |
| Black | 2 (8) | 8 (100) | 2 (13) |
| Asian | 1 (4) | 1 (7) | |
| Year of diagnosis | |||
| 2015 | 6 | 1 | 5 |
| 2016 | 5 | 3 | 2 |
| 2017 | 8 | 2 | 6 |
| 2018 | 4 | 2 | 2 |
| 2019 | 0 | 0 | 0 |
| TNM stage at diagnosis | |||
| IA2 | 2 | 1 | 1 |
| IA3 | 1 | 1 | 0 |
| IB | 1 | 1 | 0 |
| IIA | 0 | 0 | 0 |
| IIB | 2 | 1 | 1 |
| IIIA | 11 | 2 | 9 |
| IIIB | 3 | 1 | 2 |
| IIIC | 3 | 1 | 2 |
| First-line treatment, no. (%) | |||
| Platinum/etoposide with radiation | 21 (92) | 6 (75) | 15 (100) |
| Surgical resection | 1 (4) | 1 (12.5) | |
| Surgical resection with chemotherapy | 1 (4) | 1 (12.5) | |
| Prophylactic cranial irradiation, no. (%) | 10 (43) | 4 (50) | 6 (40) |
| Clinical treatment response, no. (%) | |||
| Partial response | 21 (91) | 6 (75) | 15 (100) |
| Complete response | 2 (9) | 2 (25) | 0 (0) |
ctDNA, circulating tumor DNA.
Figure 2Progression-free and overall survival for study cohort of patients with limited-stage SCLC. (A) Progression-free survival of the cohort of patients in whom we ever detected circulating tumor DNA (ctDNA) after definitive therapy (n = 15, blue line) versus never detected ctDNA after definitive therapy (n = 8, red line). (B) Overall survival of the cohort of patients in whom we ever detected ctDNA after definitive therapy (n = 15, blue line) versus never detected ctDNA after definitive therapy (n = 8, red line). LS-SCLC, limited-stage SCLC.
Overview of All Cases
| Patient ID | Age at Dx (y) | Sex | TNM Stage at Dx | Treatment-Naive Specimen | Treatment Completion Specimen Peak Mutation VAF (%) | Months Between ctDNA Detection and Radiographic Relapse or Death | Site(s) of Relapse | PFS (mo) | OS (mo) | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 65 | Female | IIIA | No | No tx-naive sample | No detectable ctDNA | R175H 0.67% | 0 | Brain | 6 | 18 |
| 2 | 54 | Female | IIIC | Yes | Q192 | No detectable ctDNA | Q192 | 0 | Adrenal, thoracic LN | 6 | 23 |
| 3 | 74 | Male | IIIA | Yes | R65 | No detectable ctDNA | R65 | 3 | Bone marrow | 6 | 9 |
| 4 | 39 | Female | IIIA | Yes | None | No detectable ctDNA | NA | No detectable ctDNA | NA | 48 | 50 |
| 5 | 74 | Male | IIIA | No | No tx-naive sample | No detectable ctDNA | None | 0 | Pulmonary nodules | 9 | 23 |
| 6 | 65 | Female | IIIB | No | No tx-naive sample | None | 12 | Lung, hilar LN | 12 | 29 | |
| 7 | 72 | Male | IIIA | No | No tx-naive sample | K351 | 1 | Unknown | 1 | 3 | |
| 8 | 65 | Female | IIIC | No | No tx-naive sample | No detectable ctDNA | NA | No detectable ctDNA | NA | 40 | 42 |
| 9 | 55 | Male | IIIB | Yes | E204 | No detectable ctDNA | NA | No detectable ctDNA | NA | 32 | 40 |
| 10 | 61 | Female | IIB | Yes | E258K 2.1% | No detectable ctDNA | NA | No detectable ctDNA | Lung | 14 | 18 |
| 11 | 79 | Female | IIIB | Yes | No detectable ctDNA | No detectable ctDNA | None | 6 | Lung | 4 | 16 |
| 12 | 67 | Female | IA2 | No | No tx-naive sample | V272L 0.4% | 4 | Unknown (clinical POD) | 4 | 7 | |
| 13 | 69 | Male | IB | Yes | No detectable ctDNA | No detectable ctDNA | NA | No detectable ctDNA | NA | 26 | 31 |
| 14 | 74 | Female | IIIA | Yes | E298 | No detectable ctDNA | E298 | 2 | Paratracheal LN, renal, adrenal | 4 | 11 |
| 15 | 66 | Male | IIIC | No | No tx-naive sample | No detectable ctDNA | C176F 15.05% | 0 | Liver, bone | 3 | 17 |
| 16 | 65 | Female | IIB | Yes | Y205S 2.63% | No detectable ctDNA | Y205S 0.24% | 7 | Unknown (clinical POD) | 12 | 15 |
| 17 | 67 | Female | IIIA | No | No tx-naive sample | Frameshift 0.39% | 7 | Pleural, supraclav LN | 7 | 24 | |
| 18 | 72 | Female | IIIA | No | No tx-naive sample | No detectable ctDNA | NA | No detectable ctDNA | NA | 18 | 22 |
| 19 | 76 | Female | IIIA | No | No tx-naive sample | None | 20 (ongoing) | None | 20 | 23 | |
| 20 | 52 | Female | IIIA | Yes | G245C 19.89% | No detectable ctDNA | G245C 0.51% | 3 | Lung | 11 | 18 |
| 21 | 78 | Female | IIIA | Yes | Y234C 33.61% | No detectable ctDNA | R248W 0.15% | 11 (ongoing) | None | 12 | 17 |
| 22 | 73 | Female | IA3 | Yes | No detectable ctDNA | No detectable ctDNA | NA | No detectable ctDNA | NA | 12 | 14 |
| 23 | 59 | Male | IA2 | Yes | No detectable ctDNA | No detectable ctDNA | NA | No detectable ctDNA | NA | 12 | 13 |
Dx, diagnosis; VAF, variant allele frequency; NA, not applicable; PFS, progression-free survival from completion of first-line therapy; OS, overall survival from date of diagnosis; POD, progression of disease; ctDNA, circulating tumor DNA; Tx, treatment; LN, lymph node.
Ongoing.
MYCL1 amplification.
NOTCH1 R2272H at 0.18%.
BRAF K601E at 0.18%.
Withdrew consent 6 months before relapse.
PIK3CA E542K at 0.24%.
First ctDNA detection 6 months after radiographic relapse.
Surgical resection with adjuvant platinum/etoposide.
NOTCH3 T272M at 0.37%.
Figure 3Sites of relapse in patients in whom circulating tumor DNA (ctDNA) was ever detected after definitive therapy. Clinical outcomes with radiographic sites of progression among the 15 patients in whom we ever detected circulating tumor DNA after definitive therapy. CT, computed tomography.
Figure 4Exemplary patient cases. (A) A timeline for patient ID 14’s clinical treatments and outcomes from the day of diagnosis until death with radiographic images is revealed. The shaded bars represent the treatment time frames, radiation therapy (RT), whole-brain radiation therapy, and nivolumab plus ipilimumab therapy (nivo + ipi). Radiographic images are presented from day 8 before diagnosis and at days 113, 179, 244, and 286. The red arrows indicate the patient’s right hilar disease in the left two panels and the enlarging left adrenal mass in the right three panels. (B) The patient’s circulating tumor DNA (ctDNA) variants and variant allele frequencies (VAFs) are plotted in accord with their treatment course. The black arrow denotes the detection of TP53 E298∗ mutation, VAF. (C) A timeline for patient ID 4’s clinical treatments and outcomes from the day of diagnosis until previous follow-up with radiographic images is revealed. The shaded bars represent the treatment time frames, RT, and prophylactic cranial irradiation (PCI). Radiographic images are presented from day 7 before diagnosis and at days 91 and 1198. The red arrows indicate the patient’s mediastinal disease that has notably improved and not increased with prolonged surveillance. (D) The patient’s circulating tumor DNA variants and VAFs are plotted in accord with their treatment course.