| Literature DB >> 34569311 |
Yan-Ping Wang1, Ting Wei1, Xiao Ma2, Xiao-Liang Zhu3, Long-Fei Ren3, Lei Zhang3, Fang-Hui Ding3, Xun Li3, Hai-Ping Wang4, Zhong-Tian Bai5, Ke-Xiang Zhu5, Long Miao5, Jun Yan5, Wen-Ce Zhou5, Wen-Bo Meng6, Yu-Qin Liu7.
Abstract
BACKGROUND: Although Helicobacter pylori (Hp) as high risk factor for gastric cancer have been investigated from human trial, present data is inadequate to explain the effect of Hp on the changes of metabolic phenotype of gastric cancer in different stages.Entities:
Keywords: Helicobacter pylori; biomarkers; gastric cancer; metabolomics
Mesh:
Substances:
Year: 2021 PMID: 34569311 PMCID: PMC8477711 DOI: 10.1177/10732748211041881
Source DB: PubMed Journal: Cancer Control ISSN: 1073-2748 Impact factor: 3.302
Figure 1.Flowchart of the study strategy in this study.
Figure 2.Metabolomic profiling of plasma samples from 4 groups identifies metabolites that distinguish patients with Gastric Cancer: (A) 2D PCA score plot in positive ion mode; (B) 2D PCA score plot in negative ion mode. Abbreviations: PCA, principal component analysis.
Identification biomarkers of gastropathy detected by UPLC-QTOF/HDMS in the different stages.
| No. | Metabolites | VIP | FC | HMDB | PubChem | KEGG | Metabolic Pathway | |
|---|---|---|---|---|---|---|---|---|
| Hp positive | ||||||||
| 1 | Dihydrouracil | 2.57 | 0.77 | 8.24E-03 | HMDB0000076 | 649 | C00429 | Pyrimidine metabolism |
| 2 | Alpha-ketoisovaleric acid | 2.44 | 0.88 | 1.38E-02 | HMDB0000019 | 49 | C00141 | Amino acid metabolism |
| 3 | Phosphorylcholine | 2.11 | 0.85 | 7.59E-03 | HMDB0001565 | 1014 | C00588 | Lipid metabolism |
| 4 | Caprylic acid | 1.91 | 0.81 | 5.99E-03 | HMDB0000482 | 379 | C06423 | Fatty acid metabolism |
| 5 | Serine | 1.76 | 1.13 | 3.77E-02 | HMDB0000187 | 5951 | C00065 | Amino acid metabolism |
| 6 | Cystine | 1.72 | 0.85 | 1.48E-02 | HMDB0000192 | 67 678 | C00491 | Amino acid metabolism |
| 7 | Glycerophosphocholine | 1.67 | 0.76 | 7.40E-03 | HMDB0000086 | 71 920 | C00670 | Lipid metabolism |
| 8 | Neopterin | 1.53 | 2.43 | 3.66E-02 | HMDB0000845 | 4455 | C05926 | Amino acid metabolism |
| Early cancer | ||||||||
| 1 | Dodecanoic acid | 2.34 | 0.48 | 6.41E-04 | HMDB0000638 | 3893 | C02679 | Fatty acid metabolism |
| 2 | Alpha-linolenic acid | 2.22 | 0.51 | 2.83E-04 | HMDB0001388 | 5 280 934 | C06427 | Fatty acid metabolism |
| 3 | 5-Methyltetrahydrofolic acid | 2.07 | 9.40 | 3.63E-02 | HMDB0001396 | 439 234 | C00440 | Methane metabolism |
| 4 | Lysine | 1.90 | 0.74 | 6.54E-04 | HMDB0000182 | 5962 | C00047 | Amino acid metabolism |
| 5 | Capric acid | 1.83 | 0.71 | 2.35E-02 | HMDB0000511 | 2969 | C01571 | Unknown |
| 6 | Linoleic acid | 1.78 | 0.80 | 3.82E-02 | HMDB0000673 | 5 280 450 | C01595 | Fatty acid metabolism |
| 7 | Isoleucine | 1.69 | 1.47 | 4.72E-03 | HMDB0000172 | 6306 | C00407 | Amino acid metabolism |
| 8 | Neopterin | 1.66 | 2.68 | 3.74E-02 | HMDB0000845 | 4455 | C05926 | Amino acid metabolism |
| 9 | Caprylic acid | 1.63 | 0.73 | 6.41E-03 | HMDB0000482 | 379 | C06423 | Fatty acid metabolism |
| 10 | Arachidonic acid | 1.62 | 0.47 | 1.21E-03 | HMDB0001043 | 444 899 | C00219 | Arachidonic acid metabolism |
| 11 | Uridine | 1.61 | 0.75 | 1.00E-03 | HMDB0000296 | 6029 | C00299 | Pyrimidine metabolism |
| 12 | Alpha-ketoisovaleric acid | 1.54 | 0.71 | 1.42E-03 | HMDB0000019 | 49 | C00141 | Amino acid metabolism |
| 13 | Estradiol | 1.45 | 0.78 | 1.29E-02 | HMDB0000151 | 5757 | C00951 | Steroid hormone biosynthesis |
| 14 | Biotin | 1.44 | 0.74 | 6.32E-04 | HMDB0000030 | 171548 | C00120 | Biotin metabolism |
| 15 | Glycerophosphocholine | 1.37 | 0.82 | 4.03E-03 | HMDB0000086 | 71 920 | C00670 | Lipid metabolism |
| 16 | Glycine | 1.20 | 1.23 | 3.83E-02 | HMDB0000123 | 750 | C00037 | Amino acid metabolism |
| 17 | Cystine | 1.09 | 0.81 | 7.95E-03 | HMDB0000192 | 67 678 | C00491 | Amino acid metabolism |
| Advanced cancer | ||||||||
| 1 | 5-Methyltetrahydrofolic acid | 2.59 | 17.90 | 4.58E-03 | HMDB0001396 | 439 234 | C00440 | Methane metabolism |
| 2 | Uridine | 2.27 | 0.49 | 7.04E-07 | HMDB0000296 | 6029 | C00299 | Pyrimidine metabolism |
| 3 | Glycerophosphocholine | 2.24 | 0.62 | 1.02E-07 | HMDB0000086 | 71 920 | C00670 | Lipid metabolism |
| 4 | Lysine | 2.18 | 0.68 | 1.08E-02 | HMDB0000182 | 5962 | C00047 | Amino acid metabolism |
| 5 | Arginine | 2.12 | 0.60 | 1.23E-05 | HMDB0000517 | 6322 | C00062 | Amino acid metabolism |
| 6 | Phosphorylcholine | 2.11 | 0.54 | 2.15E-05 | HMDB0001565 | 1014 | C00588 | Lipid metabolism |
| 7 | Dodecanoic acid | 2.01 | 0.31 | 5.37E-08 | HMDB0000638 | 3893 | C02679 | Fatty acid metabolism |
| 8 | 5′-methylthioadenosine | 2.01 | 1.79 | 5.03E-03 | HMDB0001173 | 439 176 | C00170 | Amino acid metabolism |
| 9 | Biotin | 1.99 | 0.54 | 1.96E-06 | HMDB0000030 | 171 548 | C00120 | Biotin metabolism |
| 10 | Pseudouridine | 1.95 | 1.45 | 4.62E-03 | HMDB0000767 | 15 047 | C02067 | Pyrimidine metabolism |
| 11 | 4-Pyridoxic acid | 1.93 | 8.16 | 2.99E-02 | HMDB0000017 | 6723 | C00847 | Vitamin B6 metabolism |
| 12 | Histamine | 1.82 | 2.44 | 1.15E-02 | HMDB0000870 | 774 | C00388 | Amino acid metabolism |
| 13 | Alpha-linolenic acid | 1.78 | 0.42 | 1.17E-06 | HMDB0001388 | 5 280 934 | C06427 | Fatty acid metabolism |
| 14 | Neopterin | 1.74 | 3.43 | 2.97E-03 | HMDB0000845 | 4455 | C05926 | Amino acid metabolism |
| 15 | Pyridoxamine | 1.63 | 2.17 | 1.89E-02 | HMDB0001431 | 1052 | C00534 | Vitamin B6 metabolism |
| 16 | Arachidonic acid | 1.61 | 0.42 | 1.22E-03 | HMDB0001043 | 444 899 | C00219 | Arachidonic acid metabolism |
| 17 | Estradiol | 1.57 | 0.64 | 1.02E-03 | HMDB0000151 | 5757 | C00951 | Steroid hormone biosynthesis |
| 18 | N6-acetyl-L-lysine | 1.53 | 1.39 | 8.45E-03 | HMDB0000206 | 92 832 | C02727 | Amino acid metabolism |
Abbreviations: VIP: variable importance for projection; KEGG: Kyoto encyclopedia of genes and genomes.
Figure 3.Box-and-whisker plot analysis and heatmap analysis based on orthogonal partial least squares-discriminant analysis models of Gastric Cancer patients. (A) Heatmap of 2 significantly altered plasma metabolites (glycerophosphocholine and neopterin); (B) and (C) 2 significantly altered plasma metabolites (glycerophosphocholine and neopterin) in the different stages. The letters of A, B, C1, and C2 represent the Hp negative patients, Hp positive patients, early gastric cancer patients, and advanced gastric cancer patients, respectively. Different lowercase letters show significant differences at p < 0.05. Abbreviations: Hp, Helicobacter pylori.
Figure 4.ROC analysis based on OPLS-DA models of Gastric Cancer patients biomarkers. ROC curve of the diagnostic performance of the significantly altered plasma metabolites (A) glycerophosphocholine and (B) neopterin. (C) The AUC, 95% confidence interval, sensitivity, and specificity for 2 metabolites were mentioned. Abbreviations: AUC: area under curve; OPLS-DA: orthogonal partial least squares discriminant analysis; ROC, receiver operating characteristic curve.